Wall clock time and date at job start Tue Mar 31 2020 12:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48500 * 109.46887 * 269.99533 * 3 2 1 5 5 H 1.48494 * 109.47288 * 29.99546 * 3 2 1 6 6 H 1.48500 * 109.47282 * 149.99567 * 3 2 1 7 7 C 1.38813 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64458 * 346.25935 * 9 7 2 11 11 C 1.54911 * 104.92763 * 204.09920 * 10 9 7 12 12 C 1.55280 * 101.52761 * 323.12951 * 11 10 9 13 13 C 1.47019 * 125.65189 * 166.29081 * 9 7 2 14 14 H 1.09003 * 109.88217 * 59.49720 * 13 9 7 15 15 C 1.52998 * 109.88241 * 298.33224 * 13 9 7 16 16 N 1.46500 * 109.47479 * 175.50089 * 15 13 9 17 17 C 1.34775 * 120.00014 * 184.66535 * 16 15 13 18 18 O 1.21727 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.46412 * 119.99593 * 179.97438 * 17 16 15 20 20 C 1.35785 * 124.95668 * 179.97438 * 19 17 16 21 21 C 1.38874 * 115.18363 * 180.02562 * 20 19 17 22 22 N 1.39747 * 139.91194 * 180.02562 * 21 20 19 23 23 H 0.97001 * 125.63341 * 359.97438 * 22 21 20 24 24 C 1.36215 * 108.73165 * 179.97438 * 22 21 20 25 25 C 1.34508 * 109.29701 * 0.02562 * 24 22 21 26 26 C 1.38236 * 113.39490 * 359.97438 * 21 20 19 27 27 S 1.75619 * 124.96185 * 359.69551 * 19 17 16 28 28 H 0.96998 * 119.99971 * 0.02562 * 1 2 3 29 29 H 1.08995 * 110.36942 * 322.98869 * 10 9 7 30 30 H 1.09003 * 110.36740 * 85.20576 * 10 9 7 31 31 H 1.08997 * 111.00694 * 81.11774 * 11 10 9 32 32 H 1.09005 * 111.00681 * 204.97750 * 11 10 9 33 33 H 1.08999 * 110.62008 * 277.00763 * 12 11 10 34 34 H 1.09002 * 110.75484 * 153.77928 * 12 11 10 35 35 H 1.09002 * 109.47426 * 295.50340 * 15 13 9 36 36 H 1.09000 * 109.46823 * 55.50023 * 15 13 9 37 37 H 0.97002 * 119.99808 * 4.65603 * 16 15 13 38 38 H 1.07993 * 122.40336 * 0.02562 * 20 19 17 39 39 H 1.08000 * 125.34815 * 179.97438 * 24 22 21 40 40 H 1.07997 * 126.07363 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1119 -2.5502 0.2846 11 6 -0.2607 -4.0149 0.7664 12 6 0.7668 -4.7457 -0.1399 13 6 1.9024 -3.7105 -0.2821 14 1 2.6954 -3.9296 0.4331 15 6 2.4594 -3.7416 -1.7067 16 7 3.1265 -5.0245 -1.9425 17 6 3.7770 -5.2426 -3.1025 18 8 3.8098 -4.3739 -3.9545 19 6 4.4440 -6.5245 -3.3378 20 6 5.1256 -6.8514 -4.4658 21 6 5.6794 -8.1249 -4.4735 22 7 6.4364 -8.9566 -5.3031 23 1 6.7615 -8.7277 -6.1878 24 6 6.6425 -10.1416 -4.6639 25 6 6.0481 -10.1054 -3.4578 26 6 5.4329 -8.8376 -3.3150 27 16 4.4854 -7.8613 -2.1996 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4240 -1.8596 1.0680 30 1 -0.6981 -2.3869 -0.6198 31 1 0.0102 -4.1098 1.8179 32 1 -1.2713 -4.3835 0.5901 33 1 0.3282 -4.9729 -1.1115 34 1 1.1302 -5.6532 0.3421 35 1 1.6431 -3.6203 -2.4188 36 1 3.1763 -2.9305 -1.8343 37 1 3.1000 -5.7168 -1.2636 38 1 5.2295 -6.1700 -5.2971 39 1 7.1954 -10.9791 -5.0631 40 1 6.0423 -10.9010 -2.7275 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028283025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:15 Heat of formation + Delta-G solvation = 36.704983 kcal Electronic energy + Delta-G solvation = -23492.815540 eV Core-core repulsion = 20013.555422 eV Total energy + Delta-G solvation = -3479.260118 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.11454 -40.84752 -39.28706 -36.16423 -35.77451 -34.41817 -31.86861 -31.51584 -30.75355 -29.00800 -26.77306 -25.96755 -24.41031 -22.67069 -22.02207 -21.62808 -21.33535 -20.66366 -19.41982 -18.76436 -17.81513 -17.39990 -16.71904 -16.47427 -16.45589 -16.00410 -15.72109 -15.52830 -15.25379 -14.73724 -14.64552 -14.36582 -13.98863 -13.67580 -13.64667 -13.45245 -13.05493 -12.96579 -12.85958 -12.71498 -12.51949 -12.02203 -11.98499 -11.86363 -11.70452 -11.48084 -11.40823 -11.27093 -10.69793 -10.66211 -10.23635 -9.13050 -8.87420 -8.60940 -7.88852 -5.26454 -0.51664 0.42336 0.95385 1.37490 1.43380 1.46207 1.53745 1.74470 1.89179 2.13552 2.28887 2.49637 3.30151 3.63321 3.77998 3.93466 3.97178 3.97797 4.17445 4.22294 4.25961 4.40881 4.53316 4.57008 4.71130 4.77364 4.94472 4.98071 4.99276 5.07551 5.13326 5.17770 5.28784 5.46513 5.53154 5.57547 5.67146 5.78731 5.80442 6.22438 6.40777 6.61755 7.06230 7.08960 7.75228 8.40847 9.21700 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023198 B = 0.002799 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.715941 B =10001.360617 C =10824.824303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.132 4.132 12 C -0.117 4.117 13 C 0.147 3.853 14 H 0.051 0.949 15 C 0.129 3.871 16 N -0.702 5.702 17 C 0.585 3.415 18 O -0.582 6.582 19 C -0.269 4.269 20 C -0.025 4.025 21 C -0.007 4.007 22 N -0.547 5.547 23 H 0.434 0.566 24 C 0.091 3.909 25 C -0.198 4.198 26 C -0.195 4.195 27 S 0.186 5.814 28 H 0.248 0.752 29 H 0.039 0.961 30 H -0.008 1.008 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.410 0.590 38 H 0.143 0.857 39 H 0.227 0.773 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.302 -26.751 -6.635 30.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.334 5.334 10 C 0.047 3.953 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.040 3.960 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.354 5.354 17 C 0.372 3.628 18 O -0.464 6.464 19 C -0.389 4.389 20 C -0.062 4.062 21 C -0.120 4.120 22 N -0.149 5.149 23 H 0.275 0.725 24 C -0.044 4.044 25 C -0.227 4.227 26 C -0.318 4.318 27 S 0.450 5.550 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.010 0.990 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.247 0.753 38 H 0.161 0.839 39 H 0.244 0.756 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 11.688 -26.015 -5.862 29.116 hybrid contribution 0.784 1.830 -1.804 2.686 sum 12.472 -24.185 -7.666 28.271 Atomic orbital electron populations 1.70140 1.06217 1.25407 1.57513 1.25669 0.96552 1.00950 1.02146 0.85182 0.77956 0.79552 0.77301 1.21810 1.21624 1.19290 1.19294 0.90718 0.83636 1.43292 0.90698 1.44746 1.06393 1.01799 1.80480 1.21304 0.83848 0.93633 0.96481 1.22889 0.99516 0.95203 0.99396 1.22664 0.95122 0.97348 1.00295 1.21341 0.96052 0.86939 0.91684 0.93168 1.21797 0.95209 0.83652 0.99024 1.45697 1.53814 1.17934 1.17918 1.17294 0.77875 0.85704 0.81891 1.90808 1.63010 1.46635 1.45933 1.23465 1.13420 0.99922 1.02121 1.19338 0.95139 0.93815 0.97871 1.17903 1.06451 0.93874 0.93780 1.42060 1.43637 1.11921 1.17326 0.72528 1.22724 1.00174 0.89147 0.92372 1.20575 1.06230 0.95663 1.00204 1.23646 1.08146 1.01578 0.98447 1.83438 1.53437 1.02697 1.15475 0.94260 0.94250 0.98979 0.91032 0.89697 0.91438 0.87727 0.94002 0.94259 0.75337 0.83909 0.75617 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 10.54 21.65 0.23 -57.46 16 2 C -0.06 -3.46 5.47 84.86 0.46 -2.99 16 3 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 4 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.24 -13.69 9.73 84.03 0.82 -12.88 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.61 -31.28 3.13 -668.26 -2.09 -33.37 16 10 C 0.17 8.48 5.42 86.86 0.47 8.95 16 11 C -0.13 -4.60 7.10 32.03 0.23 -4.37 16 12 C -0.12 -3.65 6.07 31.83 0.19 -3.46 16 13 C 0.15 5.87 3.22 45.34 0.15 6.01 16 14 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 15 C 0.13 5.30 5.09 86.38 0.44 5.74 16 16 N -0.70 -23.06 5.40 -467.33 -2.52 -25.58 16 17 C 0.58 20.76 7.77 86.37 0.67 21.43 16 18 O -0.58 -25.75 16.77 -4.43 -0.07 -25.82 16 19 C -0.27 -7.58 6.38 23.83 0.15 -7.42 16 20 C -0.02 -0.63 9.88 21.85 0.22 -0.42 16 21 C -0.01 -0.15 7.67 38.03 0.29 0.15 16 22 N -0.55 -6.17 6.21 -188.39 -1.17 -7.34 16 23 H 0.43 2.26 8.96 -92.71 -0.83 1.42 16 24 C 0.09 0.68 11.85 83.16 0.99 1.66 16 25 C -0.20 -2.54 10.85 22.25 0.24 -2.30 16 26 C -0.20 -3.87 7.31 23.11 0.17 -3.70 16 27 S 0.19 3.96 22.29 -56.49 -1.26 2.70 16 28 H 0.25 14.74 8.31 -92.71 -0.77 13.96 16 29 H 0.04 2.18 6.86 -2.39 -0.02 2.16 16 30 H -0.01 -0.43 8.08 -2.39 -0.02 -0.45 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.07 2.10 7.78 -2.39 -0.02 2.08 16 34 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.04 1.90 8.04 -2.39 -0.02 1.88 16 36 H 0.04 1.87 7.86 -2.39 -0.02 1.85 16 37 H 0.41 10.66 7.30 -92.71 -0.68 9.98 16 38 H 0.14 3.61 8.00 -2.91 -0.02 3.59 16 39 H 0.23 -0.61 8.06 -2.91 -0.02 -0.63 16 40 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -79.26 346.73 0.21 -79.06 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -0.42 Total: 12.09 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.49 Total: 6.41 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -5.55 Total: -123.75 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.07 Total: -25.82 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.26 Total: 2.70 kcal Total: -79.26 0.21 -79.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028283025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.763 kcal (2) G-P(sol) polarization free energy of solvation -79.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds