Wall clock time and date at job start Tue Mar 31 2020 12:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99616 * 2 1 4 4 H 1.48502 * 109.46638 * 239.99511 * 3 2 1 5 5 H 1.48500 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46754 * 119.99974 * 3 2 1 7 7 C 1.38812 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99678 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00136 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64655 * 14.72713 * 9 7 2 11 11 C 1.54915 * 104.82973 * 155.89204 * 10 9 7 12 12 C 1.55159 * 101.57763 * 37.01558 * 11 10 9 13 13 C 1.47018 * 125.64796 * 194.75721 * 9 7 2 14 14 H 1.08998 * 110.01105 * 300.52494 * 13 9 7 15 15 C 1.53001 * 109.88395 * 61.61862 * 13 9 7 16 16 N 1.46501 * 109.47183 * 182.39728 * 15 13 9 17 17 C 1.34781 * 119.99648 * 185.13276 * 16 15 13 18 18 O 1.21722 * 120.00244 * 0.02562 * 17 16 15 19 19 C 1.46409 * 119.99445 * 180.02562 * 17 16 15 20 20 C 1.35777 * 124.95813 * 179.97438 * 19 17 16 21 21 C 1.38874 * 115.18808 * 179.97438 * 20 19 17 22 22 N 1.39740 * 139.91468 * 180.02562 * 21 20 19 23 23 H 0.97002 * 125.63123 * 0.02562 * 22 21 20 24 24 C 1.36211 * 108.73548 * 179.97438 * 22 21 20 25 25 C 1.34508 * 109.29710 * 0.02562 * 24 22 21 26 26 C 1.38237 * 113.39048 * 0.24676 * 21 20 19 27 27 S 1.75614 * 124.96329 * 359.97438 * 19 17 16 28 28 H 0.97000 * 120.00326 * 0.02562 * 1 2 3 29 29 H 1.09005 * 110.36591 * 37.06011 * 10 9 7 30 30 H 1.08998 * 110.46297 * 274.78172 * 10 9 7 31 31 H 1.09000 * 111.00710 * 278.93714 * 11 10 9 32 32 H 1.09000 * 111.00153 * 155.08095 * 11 10 9 33 33 H 1.09007 * 110.71608 * 206.13373 * 12 11 10 34 34 H 1.08994 * 110.72508 * 82.86180 * 12 11 10 35 35 H 1.09003 * 109.47174 * 62.39697 * 15 13 9 36 36 H 1.09001 * 109.46738 * 302.40089 * 15 13 9 37 37 H 0.96994 * 119.99954 * 5.13546 * 16 15 13 38 38 H 1.08000 * 122.40340 * 359.96814 * 20 19 17 39 39 H 1.07991 * 125.35217 * 180.02562 * 24 22 21 40 40 H 1.07996 * 126.07842 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1072 -2.5529 -0.3045 11 6 -0.2460 -4.0223 -0.7752 12 6 0.7640 -4.7441 0.1555 13 6 1.8976 -3.7077 0.3054 14 1 2.7029 -3.9355 -0.3930 15 6 2.4320 -3.7247 1.7389 16 7 3.0507 -5.0238 2.0141 17 6 3.5006 -5.3071 3.2527 18 8 3.3924 -4.4837 4.1426 19 6 4.1194 -6.6052 3.5275 20 6 4.6060 -6.9953 4.7335 21 6 5.1506 -8.2724 4.7661 22 7 5.7599 -9.1523 5.6646 23 1 5.9343 -8.9721 6.6016 24 6 6.0673 -10.3051 5.0075 25 6 5.6809 -10.2015 3.7234 26 6 5.1021 -8.9209 3.5462 27 16 4.3407 -7.8850 2.3455 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4068 -1.8700 -1.0996 30 1 -0.7090 -2.3821 0.5881 31 1 0.0430 -4.1265 -1.8211 32 1 -1.2589 -4.3906 -0.6128 33 1 1.1350 -5.6565 -0.3117 34 1 0.3101 -4.9617 1.1223 35 1 1.6098 -3.5590 2.4352 36 1 3.1745 -2.9357 1.8592 37 1 3.1366 -5.6800 1.3050 38 1 4.5721 -6.3581 5.6049 39 1 6.5461 -11.1669 5.4483 40 1 5.7950 -10.9586 2.9618 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028283026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:18 Heat of formation + Delta-G solvation = 59.714080 kcal Electronic energy + Delta-G solvation = -23502.477026 eV Core-core repulsion = 20024.214657 eV Total energy + Delta-G solvation = -3478.262369 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41649 -39.44453 -37.61715 -35.21276 -34.23928 -32.46473 -31.19011 -29.86885 -29.09990 -27.91648 -25.11058 -24.34863 -23.18212 -21.72641 -20.92346 -20.27997 -19.93076 -19.21928 -18.58317 -17.07740 -16.42518 -15.88830 -15.63652 -15.22769 -14.89463 -14.65620 -14.51806 -14.24630 -13.82622 -13.73287 -13.37865 -13.07476 -12.94798 -12.15571 -12.08762 -11.87570 -11.81425 -11.57787 -11.28496 -11.07102 -10.92818 -10.75887 -10.23163 -10.12041 -10.00031 -9.90744 -9.84280 -9.76713 -9.66677 -8.73840 -8.56851 -8.30426 -7.85780 -6.82702 -5.75338 -3.12086 0.42319 1.28400 1.82608 2.22274 2.41247 2.71633 3.36767 3.40017 3.44990 3.46906 3.48762 4.49715 4.62604 4.64889 4.80479 5.12047 5.23371 5.34627 5.42291 5.51425 5.56403 5.63823 5.72676 5.81988 5.83325 6.07861 6.15468 6.24674 6.27356 6.47677 6.47956 6.56057 6.61223 6.70516 6.81769 7.06738 7.11425 7.52948 7.62624 7.72174 7.80617 8.26739 8.39098 9.18831 9.79309 10.46794 11.36627 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023807 B = 0.002778 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.828381 B =10078.136483 C =10806.022268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.151 3.849 14 H 0.038 0.962 15 C 0.109 3.891 16 N -0.715 5.715 17 C 0.584 3.416 18 O -0.532 6.532 19 C -0.226 4.226 20 C -0.038 4.038 21 C 0.026 3.974 22 N -0.558 5.558 23 H 0.419 0.581 24 C 0.055 3.945 25 C -0.171 4.171 26 C -0.190 4.190 27 S 0.164 5.836 28 H 0.254 0.746 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.394 0.606 38 H 0.149 0.851 39 H 0.177 0.823 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.658 -22.776 7.142 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.015 4.015 16 N -0.365 5.365 17 C 0.368 3.632 18 O -0.410 6.410 19 C -0.347 4.347 20 C -0.074 4.074 21 C -0.088 4.088 22 N -0.159 5.159 23 H 0.257 0.743 24 C -0.079 4.079 25 C -0.201 4.201 26 C -0.312 4.312 27 S 0.427 5.573 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.227 0.773 38 H 0.167 0.833 39 H 0.194 0.806 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.136 -21.957 6.338 24.612 hybrid contribution 0.998 0.705 1.787 2.164 sum 10.134 -21.252 8.125 24.907 Atomic orbital electron populations 1.69930 1.05023 1.25442 1.55747 1.24920 0.95678 0.97874 1.01341 0.86223 0.78594 0.83058 0.78041 1.21064 1.21572 1.20928 1.18942 0.90387 0.82173 1.44826 0.90673 1.44471 1.06451 1.00977 1.79296 1.21455 0.84760 0.90171 0.98858 1.23005 0.97560 0.99581 0.98537 1.22622 0.97131 0.96998 0.99806 1.21140 0.94617 0.88190 0.91787 0.94395 1.22326 0.97634 0.82106 0.99467 1.46007 1.60912 1.19428 1.10178 1.16867 0.78351 0.84669 0.83277 1.90847 1.57055 1.48136 1.44982 1.23900 1.12641 1.00208 0.97938 1.19241 0.97308 0.92552 0.98263 1.18006 1.07351 0.93854 0.89608 1.41902 1.50254 1.12481 1.11231 0.74306 1.21853 1.03211 0.90153 0.92685 1.20130 1.07763 0.95669 0.96533 1.23200 1.10277 1.00710 0.97050 1.83734 1.59561 1.04647 1.09399 0.93543 0.90984 0.95564 0.92271 0.92318 0.92319 0.91756 0.91240 0.91196 0.77259 0.83334 0.80564 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.58 55.49 0.59 -26.15 16 2 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.46 9.76 -15.06 -0.15 -6.61 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.59 -14.66 3.13 -162.57 -0.51 -15.16 16 10 C 0.17 4.12 5.41 -2.53 -0.01 4.11 16 11 C -0.15 -2.73 7.09 -24.58 -0.17 -2.90 16 12 C -0.13 -2.16 6.10 -24.89 -0.15 -2.31 16 13 C 0.15 3.02 3.22 -66.95 -0.22 2.81 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 15 C 0.11 2.17 5.07 -4.04 -0.02 2.15 16 16 N -0.71 -11.58 5.32 -61.70 -0.33 -11.91 16 17 C 0.58 9.98 7.77 -12.97 -0.10 9.88 16 18 O -0.53 -11.08 16.77 5.17 0.09 -10.99 16 19 C -0.23 -3.16 6.38 -37.18 -0.24 -3.39 16 20 C -0.04 -0.48 9.88 -40.23 -0.40 -0.88 16 21 C 0.03 0.28 7.67 -84.02 -0.64 -0.36 16 22 N -0.56 -4.13 6.21 -10.90 -0.07 -4.19 16 23 H 0.42 1.82 8.96 -40.82 -0.37 1.45 16 24 C 0.05 0.34 11.85 -16.93 -0.20 0.14 16 25 C -0.17 -1.45 10.85 -39.60 -0.43 -1.88 16 26 C -0.19 -2.11 7.31 -38.28 -0.28 -2.39 16 27 S 0.16 1.86 22.29 -107.50 -2.40 -0.54 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 30 H 0.03 0.68 8.06 -51.93 -0.42 0.27 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.09 7.81 -51.93 -0.41 0.68 16 35 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 36 H 0.07 1.55 7.92 -51.93 -0.41 1.14 16 37 H 0.39 5.33 7.39 -40.82 -0.30 5.03 16 38 H 0.15 1.80 8.00 -52.49 -0.42 1.38 16 39 H 0.18 0.39 8.06 -52.49 -0.42 -0.04 16 40 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -33.71 346.98 -10.71 -44.43 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.18 Total: 3.87 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.11 Total: -1.77 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.32 Total: -57.42 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.40 Total: -0.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.71 -10.71 -44.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028283026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.143 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds