Wall clock time and date at job start Tue Mar 31 2020 12:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99768 * 2 1 4 4 H 1.48502 * 109.47172 * 239.99851 * 3 2 1 5 5 H 1.48504 * 109.47299 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47028 * 119.99711 * 3 2 1 7 7 C 1.38807 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99579 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00447 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64630 * 359.97438 * 9 7 2 11 11 C 1.54912 * 104.83173 * 155.90548 * 10 9 7 12 12 C 1.55155 * 101.58483 * 37.00868 * 11 10 9 13 13 H 1.09001 * 110.71979 * 83.03376 * 12 11 10 14 14 C 1.52999 * 110.72333 * 206.13644 * 12 11 10 15 15 N 1.46497 * 109.46992 * 182.55725 * 14 12 11 16 16 C 1.34786 * 119.99732 * 180.02562 * 15 14 12 17 17 O 1.21733 * 119.99968 * 359.97438 * 16 15 14 18 18 C 1.46409 * 119.99616 * 179.72430 * 16 15 14 19 19 C 1.35775 * 124.95587 * 179.97438 * 18 16 15 20 20 C 1.38880 * 115.18732 * 179.83077 * 19 18 16 21 21 N 1.39741 * 139.91620 * 180.12213 * 20 19 18 22 22 H 0.97008 * 125.63266 * 0.29029 * 21 20 19 23 23 C 1.36216 * 108.73379 * 180.31928 * 21 20 19 24 24 C 1.34506 * 109.29761 * 359.97438 * 23 21 20 25 25 C 1.38237 * 113.38908 * 0.45266 * 20 19 18 26 26 S 1.75620 * 124.96321 * 0.29841 * 18 16 15 27 27 C 1.47325 * 125.61932 * 180.19563 * 9 7 2 28 28 H 0.96995 * 120.00015 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.36919 * 37.06425 * 10 9 7 30 30 H 1.08999 * 110.46185 * 274.78441 * 10 9 7 31 31 H 1.08998 * 111.00447 * 278.93268 * 11 10 9 32 32 H 1.09004 * 111.03567 * 155.09685 * 11 10 9 33 33 H 1.09003 * 109.46690 * 62.55891 * 14 12 11 34 34 H 1.08993 * 109.47209 * 302.55917 * 14 12 11 35 35 H 0.97000 * 120.00583 * 359.97438 * 15 14 12 36 36 H 1.08001 * 122.41176 * 0.02562 * 19 18 16 37 37 H 1.07999 * 125.35232 * 179.97438 * 23 21 20 38 38 H 1.07998 * 126.08112 * 180.02562 * 24 23 21 39 39 H 1.09002 * 110.06080 * 61.67964 * 27 9 7 40 40 H 1.09002 * 109.84567 * 300.42467 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1414 -2.5331 0.0005 11 6 -0.4015 -3.9325 -0.6108 12 6 0.7785 -4.7525 -0.0254 13 1 0.5447 -5.1002 0.9808 14 6 1.1233 -5.9317 -0.9372 15 7 2.1977 -6.7208 -0.3297 16 6 2.6687 -7.8154 -0.9595 17 8 2.2009 -8.1486 -2.0328 18 6 3.7466 -8.6006 -0.3552 19 6 4.2950 -9.7171 -0.8994 20 6 5.3104 -10.3009 -0.1531 21 7 6.1856 -11.3891 -0.2054 22 1 6.2338 -12.0417 -0.9215 23 6 6.9594 -11.3824 0.9156 24 6 6.6173 -10.3339 1.6857 25 6 5.5747 -9.6351 1.0292 26 16 4.5135 -8.2404 1.1831 27 6 1.9338 -3.7298 0.0052 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5992 -1.7590 -0.6153 30 1 -0.5290 -2.4858 1.0182 31 1 -0.3519 -3.8988 -1.6991 32 1 -1.3589 -4.3332 -0.2777 33 1 1.4511 -5.5573 -1.9070 34 1 0.2417 -6.5589 -1.0690 35 1 2.5708 -6.4551 0.5254 36 1 3.9675 -10.1205 -1.8462 37 1 7.7269 -12.1053 1.1494 38 1 7.0589 -10.0716 2.6357 39 1 2.5276 -3.8681 0.9088 40 1 2.5625 -3.8543 -0.8766 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028951472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:19 Heat of formation + Delta-G solvation = 60.857473 kcal Electronic energy + Delta-G solvation = -23167.292571 eV Core-core repulsion = 19689.079784 eV Total energy + Delta-G solvation = -3478.212787 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47273 -39.66486 -37.63610 -35.32903 -34.61029 -32.51409 -31.23804 -29.99637 -28.83485 -27.85313 -25.64635 -24.32945 -23.11332 -21.82014 -21.00856 -20.40961 -19.89690 -19.31251 -18.65704 -17.06955 -16.68956 -16.04015 -15.69853 -15.50356 -15.04548 -14.72331 -14.54397 -14.43323 -13.84713 -13.77549 -13.58656 -13.02860 -12.88559 -12.48293 -12.22640 -11.79279 -11.75843 -11.63186 -11.46512 -11.11227 -10.93571 -10.76934 -10.44554 -10.17094 -10.06533 -9.96759 -9.96546 -9.75976 -9.49828 -9.03372 -8.62564 -8.38834 -7.91467 -6.81319 -5.63090 -3.04629 0.33046 1.21994 1.76269 2.14926 2.35076 2.64646 3.17341 3.23596 3.42494 3.46466 3.47872 4.50222 4.55040 4.58929 4.71267 4.99163 5.13514 5.17667 5.27362 5.41933 5.49659 5.54492 5.64470 5.71022 5.75129 5.90036 6.07824 6.12509 6.19136 6.36460 6.40319 6.42435 6.57717 6.60525 6.73880 6.92769 7.06319 7.47083 7.53525 7.64397 7.87781 8.14432 8.38651 9.24495 9.85159 10.50238 11.40907 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021496 B = 0.002542 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.260609 B =11010.843987 C =11876.575141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.134 4.134 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.133 3.867 15 N -0.718 5.718 16 C 0.590 3.410 17 O -0.535 6.535 18 C -0.234 4.234 19 C -0.033 4.033 20 C 0.023 3.977 21 N -0.558 5.558 22 H 0.420 0.580 23 C 0.057 3.943 24 C -0.171 4.171 25 C -0.188 4.188 26 S 0.170 5.830 27 C 0.140 3.860 28 H 0.252 0.748 29 H 0.107 0.893 30 H 0.012 0.988 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.400 0.600 36 H 0.149 0.851 37 H 0.178 0.822 38 H 0.148 0.852 39 H 0.019 0.981 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.713 -24.431 2.448 26.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.010 3.990 15 N -0.368 5.368 16 C 0.375 3.625 17 O -0.414 6.414 18 C -0.355 4.355 19 C -0.069 4.069 20 C -0.091 4.091 21 N -0.159 5.159 22 H 0.257 0.743 23 C -0.077 4.077 24 C -0.201 4.201 25 C -0.310 4.310 26 S 0.434 5.566 27 C 0.014 3.986 28 H 0.063 0.937 29 H 0.125 0.875 30 H 0.030 0.970 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.234 0.766 36 H 0.167 0.833 37 H 0.195 0.805 38 H 0.165 0.835 39 H 0.037 0.963 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 10.090 -23.338 2.635 25.562 hybrid contribution 1.028 -0.538 -0.798 1.408 sum 11.117 -23.876 1.837 26.401 Atomic orbital electron populations 1.69787 1.04877 1.24866 1.57666 1.24787 0.95739 0.97713 1.02499 0.86146 0.78390 0.83034 0.77889 1.21166 1.21580 1.21234 1.19037 0.90489 0.82507 1.43032 0.90576 1.44565 1.01946 0.99671 1.86868 1.21931 0.84649 0.92491 0.98215 1.23004 0.95450 0.98570 1.00344 1.22464 0.98426 0.93969 0.98667 0.90489 1.21528 0.88892 0.91572 0.96985 1.45939 1.39156 1.27123 1.24586 1.16822 0.81069 0.80189 0.84393 1.90831 1.59567 1.69916 1.21068 1.23785 1.06450 1.03207 1.02009 1.19218 0.93559 0.93943 1.00215 1.17996 0.99442 0.93615 0.98000 1.41901 1.30215 1.23649 1.20112 0.74285 1.21875 0.97972 1.00749 0.87078 1.20155 1.00386 0.97357 1.02194 1.23228 1.05324 1.02143 1.00314 1.83887 1.30522 1.24807 1.17425 1.21403 0.93456 0.85954 0.97827 0.93693 0.87505 0.97006 0.91785 0.92067 0.90866 0.91276 0.76572 0.83337 0.80486 0.83462 0.96272 0.95650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.04 10.09 55.49 0.56 -26.48 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.56 3.40 -169.83 -0.58 -16.14 16 10 C 0.15 3.68 5.89 -2.53 -0.01 3.66 16 11 C -0.13 -2.50 6.54 -24.58 -0.16 -2.66 16 12 C -0.12 -1.96 2.98 -88.79 -0.26 -2.22 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.13 2.02 5.00 -4.04 -0.02 2.00 16 15 N -0.72 -10.10 5.42 -61.70 -0.33 -10.43 16 16 C 0.59 8.84 7.77 -12.97 -0.10 8.74 16 17 O -0.53 -9.58 16.77 5.16 0.09 -9.49 16 18 C -0.23 -2.99 6.38 -37.18 -0.24 -3.23 16 19 C -0.03 -0.38 9.88 -40.23 -0.40 -0.78 16 20 C 0.02 0.24 7.67 -84.02 -0.64 -0.41 16 21 N -0.56 -3.79 6.21 -10.90 -0.07 -3.86 16 22 H 0.42 1.54 8.96 -40.82 -0.37 1.17 16 23 C 0.06 0.33 11.85 -16.92 -0.20 0.13 16 24 C -0.17 -1.41 10.85 -39.60 -0.43 -1.83 16 25 C -0.19 -2.01 7.31 -38.28 -0.28 -2.29 16 26 S 0.17 1.88 22.29 -107.50 -2.40 -0.52 16 27 C 0.14 2.88 6.66 -2.90 -0.02 2.86 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.11 2.92 5.87 -51.93 -0.31 2.61 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 1.18 8.05 -51.93 -0.42 0.77 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.21 8.00 -51.93 -0.42 0.80 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.40 5.04 7.46 -40.82 -0.30 4.74 16 36 H 0.15 1.59 8.00 -52.49 -0.42 1.17 16 37 H 0.18 0.33 8.06 -52.49 -0.42 -0.10 16 38 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.03 0.54 7.73 -51.93 -0.40 0.13 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -34.14 346.65 -10.69 -44.82 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.14 Total: 2.53 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -3.02 Total: -2.88 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.42 Total: -56.90 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.40 Total: -0.52 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.14 -10.69 -44.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028951472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.682 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds