Wall clock time and date at job start Tue Mar 31 2020 12:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99768 * 2 1 4 4 H 1.48502 * 109.47172 * 239.99851 * 3 2 1 5 5 H 1.48504 * 109.47299 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47028 * 119.99711 * 3 2 1 7 7 C 1.38807 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99579 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00447 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64630 * 359.97438 * 9 7 2 11 11 C 1.54912 * 104.83173 * 155.90548 * 10 9 7 12 12 C 1.55155 * 101.58483 * 37.00868 * 11 10 9 13 13 H 1.09001 * 110.71979 * 83.03376 * 12 11 10 14 14 C 1.52999 * 110.72333 * 206.13644 * 12 11 10 15 15 N 1.46497 * 109.46992 * 182.55725 * 14 12 11 16 16 C 1.34786 * 119.99732 * 180.02562 * 15 14 12 17 17 O 1.21733 * 119.99968 * 359.97438 * 16 15 14 18 18 C 1.46409 * 119.99616 * 179.72430 * 16 15 14 19 19 C 1.35775 * 124.95587 * 179.97438 * 18 16 15 20 20 C 1.38880 * 115.18732 * 179.83077 * 19 18 16 21 21 N 1.39741 * 139.91620 * 180.12213 * 20 19 18 22 22 H 0.97008 * 125.63266 * 0.29029 * 21 20 19 23 23 C 1.36216 * 108.73379 * 180.31928 * 21 20 19 24 24 C 1.34506 * 109.29761 * 359.97438 * 23 21 20 25 25 C 1.38237 * 113.38908 * 0.45266 * 20 19 18 26 26 S 1.75620 * 124.96321 * 0.29841 * 18 16 15 27 27 C 1.47325 * 125.61932 * 180.19563 * 9 7 2 28 28 H 0.96995 * 120.00015 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.36919 * 37.06425 * 10 9 7 30 30 H 1.08999 * 110.46185 * 274.78441 * 10 9 7 31 31 H 1.08998 * 111.00447 * 278.93268 * 11 10 9 32 32 H 1.09004 * 111.03567 * 155.09685 * 11 10 9 33 33 H 1.09003 * 109.46690 * 62.55891 * 14 12 11 34 34 H 1.08993 * 109.47209 * 302.55917 * 14 12 11 35 35 H 0.97000 * 120.00583 * 359.97438 * 15 14 12 36 36 H 1.08001 * 122.41176 * 0.02562 * 19 18 16 37 37 H 1.07999 * 125.35232 * 179.97438 * 23 21 20 38 38 H 1.07998 * 126.08112 * 180.02562 * 24 23 21 39 39 H 1.09002 * 110.06080 * 61.67964 * 27 9 7 40 40 H 1.09002 * 109.84567 * 300.42467 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1414 -2.5331 0.0005 11 6 -0.4015 -3.9325 -0.6108 12 6 0.7785 -4.7525 -0.0254 13 1 0.5447 -5.1002 0.9808 14 6 1.1233 -5.9317 -0.9372 15 7 2.1977 -6.7208 -0.3297 16 6 2.6687 -7.8154 -0.9595 17 8 2.2009 -8.1486 -2.0328 18 6 3.7466 -8.6006 -0.3552 19 6 4.2950 -9.7171 -0.8994 20 6 5.3104 -10.3009 -0.1531 21 7 6.1856 -11.3891 -0.2054 22 1 6.2338 -12.0417 -0.9215 23 6 6.9594 -11.3824 0.9156 24 6 6.6173 -10.3339 1.6857 25 6 5.5747 -9.6351 1.0292 26 16 4.5135 -8.2404 1.1831 27 6 1.9338 -3.7298 0.0052 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5992 -1.7590 -0.6153 30 1 -0.5290 -2.4858 1.0182 31 1 -0.3519 -3.8988 -1.6991 32 1 -1.3589 -4.3332 -0.2777 33 1 1.4511 -5.5573 -1.9070 34 1 0.2417 -6.5589 -1.0690 35 1 2.5708 -6.4551 0.5254 36 1 3.9675 -10.1205 -1.8462 37 1 7.7269 -12.1053 1.1494 38 1 7.0589 -10.0716 2.6357 39 1 2.5276 -3.8681 0.9088 40 1 2.5625 -3.8543 -0.8766 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028951472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:19 Heat of formation + Delta-G solvation = 38.012456 kcal Electronic energy + Delta-G solvation = -23168.283205 eV Core-core repulsion = 19689.079784 eV Total energy + Delta-G solvation = -3479.203422 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.12202 -40.84805 -39.25262 -36.30143 -35.90267 -34.34145 -31.90569 -31.69344 -30.23333 -29.03413 -27.30196 -25.71192 -24.32487 -22.71349 -22.06788 -21.60590 -21.39429 -20.52707 -19.42350 -18.85424 -17.87065 -17.29860 -16.80503 -16.63365 -16.47559 -16.10855 -15.62313 -15.50101 -15.26731 -14.85971 -14.38354 -14.34893 -14.27171 -13.67212 -13.54125 -13.38985 -13.15675 -12.97086 -12.82840 -12.64936 -12.51278 -12.04733 -11.99908 -11.88378 -11.82472 -11.59166 -11.40858 -11.17180 -10.72467 -10.67431 -10.23247 -9.14181 -8.87500 -8.63014 -7.76453 -5.20624 -0.51502 0.41895 0.95899 1.37042 1.46749 1.50056 1.56412 1.72541 1.89804 2.13622 2.29929 2.50456 3.32613 3.58765 3.70515 3.82197 3.95407 3.96647 4.06449 4.16907 4.23016 4.44056 4.56351 4.64836 4.67532 4.72954 4.82175 4.90650 4.97976 5.03813 5.06068 5.13362 5.27172 5.38693 5.48079 5.55599 5.67238 5.79338 5.83670 6.32643 6.35963 6.61574 7.01818 7.12268 7.79592 8.43345 9.25303 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021496 B = 0.002542 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.260609 B =11010.843987 C =11876.575141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.152 3.848 11 C -0.121 4.121 12 C -0.096 4.096 13 H 0.096 0.904 14 C 0.144 3.856 15 N -0.713 5.713 16 C 0.591 3.409 17 O -0.572 6.572 18 C -0.269 4.269 19 C -0.022 4.022 20 C -0.006 4.006 21 N -0.546 5.546 22 H 0.435 0.565 23 C 0.092 3.908 24 C -0.201 4.201 25 C -0.197 4.197 26 S 0.168 5.832 27 C 0.136 3.864 28 H 0.247 0.753 29 H 0.072 0.928 30 H -0.009 1.009 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.407 0.593 36 H 0.150 0.850 37 H 0.227 0.773 38 H 0.163 0.837 39 H 0.027 0.973 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.784 -26.908 3.166 29.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.354 5.354 10 C 0.027 3.973 11 C -0.160 4.160 12 C -0.115 4.115 13 H 0.114 0.886 14 C 0.021 3.979 15 N -0.363 5.363 16 C 0.379 3.621 17 O -0.454 6.454 18 C -0.389 4.389 19 C -0.058 4.058 20 C -0.119 4.119 21 N -0.148 5.148 22 H 0.276 0.724 23 C -0.044 4.044 24 C -0.230 4.230 25 C -0.320 4.320 26 S 0.431 5.569 27 C 0.011 3.989 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.009 0.991 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.243 0.757 36 H 0.168 0.832 37 H 0.243 0.757 38 H 0.181 0.819 39 H 0.045 0.955 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 12.172 -25.844 3.350 28.762 hybrid contribution 0.545 0.080 -0.970 1.115 sum 12.716 -25.764 2.380 28.829 Atomic orbital electron populations 1.70047 1.06151 1.25098 1.58566 1.25636 0.96681 1.00971 1.02749 0.85124 0.77130 0.78749 0.78159 1.20438 1.21841 1.20361 1.19415 0.90984 0.83919 1.42643 0.90361 1.44888 1.02837 1.00862 1.86841 1.21741 0.83966 0.94905 0.96710 1.22846 0.97639 0.95371 1.00106 1.22307 0.95953 0.93276 0.99992 0.88553 1.21310 0.89736 0.91122 0.95768 1.45834 1.38867 1.26851 1.24796 1.17076 0.81103 0.80054 0.83855 1.90797 1.61035 1.70951 1.22658 1.23524 1.07470 1.04351 1.03564 1.19350 0.93182 0.93264 1.00015 1.17966 1.00488 0.95332 0.98074 1.42037 1.29092 1.22785 1.20883 0.72397 1.22692 0.96720 0.99837 0.85117 1.20571 1.00563 0.98262 1.03615 1.23624 1.05653 1.01794 1.00922 1.83722 1.30949 1.25653 1.16549 1.21564 0.94768 0.84799 0.97785 0.94307 0.90990 0.99098 0.91747 0.89008 0.92321 0.89937 0.75691 0.83211 0.75654 0.81913 0.95452 0.96109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.22 10.09 21.65 0.22 -57.01 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 3 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.24 -13.77 10.28 84.03 0.86 -12.91 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.63 -32.89 3.40 -691.22 -2.35 -35.24 16 10 C 0.15 7.52 5.89 86.86 0.51 8.03 16 11 C -0.12 -4.39 6.54 31.99 0.21 -4.18 16 12 C -0.10 -3.13 2.98 -9.61 -0.03 -3.16 16 13 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 14 C 0.14 4.24 5.00 86.38 0.43 4.68 16 15 N -0.71 -19.76 5.42 -467.32 -2.54 -22.29 16 16 C 0.59 17.85 7.77 86.37 0.67 18.52 16 17 O -0.57 -20.81 16.77 -4.45 -0.07 -20.88 16 18 C -0.27 -6.90 6.38 23.83 0.15 -6.75 16 19 C -0.02 -0.49 9.88 21.85 0.22 -0.27 16 20 C -0.01 -0.11 7.67 38.03 0.29 0.18 16 21 N -0.55 -5.65 6.21 -188.39 -1.17 -6.82 16 22 H 0.44 1.69 8.96 -92.70 -0.83 0.86 16 23 C 0.09 0.68 11.85 83.16 0.99 1.66 16 24 C -0.20 -2.70 10.85 22.26 0.24 -2.46 16 25 C -0.20 -3.92 7.31 23.11 0.17 -3.75 16 26 S 0.17 3.64 22.29 -56.49 -1.26 2.38 16 27 C 0.14 5.59 6.66 86.67 0.58 6.16 16 28 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.07 4.09 5.87 -2.39 -0.01 4.07 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.06 2.35 8.05 -2.39 -0.02 2.33 16 32 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.06 1.93 8.00 -2.39 -0.02 1.91 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.41 10.03 7.46 -92.71 -0.69 9.34 16 36 H 0.15 3.21 8.00 -2.91 -0.02 3.19 16 37 H 0.23 -0.60 8.06 -2.91 -0.02 -0.62 16 38 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.02 0.88 7.73 -2.39 -0.02 0.86 16 Total: -1.00 -76.56 346.65 0.18 -76.38 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -0.43 Total: 12.83 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.76 Total: 2.29 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -5.84 Total: -121.36 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.07 Total: -20.88 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.26 Total: 2.38 kcal Total: -76.56 0.18 -76.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028951472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.392 kcal (2) G-P(sol) polarization free energy of solvation -76.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds