Wall clock time and date at job start Tue Mar 31 2020 12:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09004 * 111.00584 * 277.42534 * 12 11 10 14 14 C 1.52998 * 111.00283 * 153.57810 * 12 11 10 15 15 N 1.46504 * 109.47171 * 181.35255 * 14 12 11 16 16 C 1.34773 * 120.00257 * 180.02562 * 15 14 12 17 17 O 1.21733 * 119.99720 * 359.97438 * 16 15 14 18 18 C 1.46414 * 120.00346 * 179.97438 * 16 15 14 19 19 C 1.35777 * 124.96239 * 179.71845 * 18 16 15 20 20 C 1.38867 * 115.18565 * 179.82388 * 19 18 16 21 21 N 1.39742 * 139.91343 * 180.11617 * 20 19 18 22 22 H 0.97004 * 125.63469 * 0.30397 * 21 20 19 23 23 C 1.36217 * 108.73388 * 180.32609 * 21 20 19 24 24 C 1.34506 * 109.29677 * 359.97438 * 23 21 20 25 25 C 1.38241 * 113.39118 * 0.45395 * 20 19 18 26 26 S 1.75617 * 124.95530 * 0.02562 * 18 16 15 27 27 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 28 28 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 30 30 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 31 31 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 32 32 H 1.08993 * 110.87182 * 96.23712 * 11 10 9 33 33 H 1.09005 * 109.47074 * 301.34528 * 14 12 11 34 34 H 1.08999 * 109.47392 * 61.34922 * 14 12 11 35 35 H 0.96996 * 119.99481 * 359.97438 * 15 14 12 36 36 H 1.07999 * 122.40275 * 0.02595 * 19 18 16 37 37 H 1.08001 * 125.34899 * 180.02562 * 23 21 20 38 38 H 1.08002 * 126.07691 * 179.97438 * 24 23 21 39 39 H 1.09002 * 110.36346 * 322.70225 * 27 9 7 40 40 H 1.08999 * 110.37028 * 84.91483 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9146 -4.4021 -2.0770 14 6 1.0712 -6.0618 -0.6839 15 7 2.3370 -6.5297 -1.2541 16 6 2.7115 -7.8151 -1.0993 17 8 1.9981 -8.5872 -0.4854 18 6 3.9762 -8.2829 -1.6696 19 6 4.4529 -9.5503 -1.5703 20 6 5.6747 -9.7726 -2.1918 21 7 6.5912 -10.8047 -2.4098 22 1 6.4972 -11.7190 -2.0995 23 6 7.6389 -10.3148 -3.1294 24 6 7.4323 -9.0101 -3.3832 25 6 6.1950 -8.6447 -2.7987 26 16 5.1018 -7.2846 -2.5755 27 6 1.9495 -3.7169 -0.2720 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5671 -2.1845 0.7439 30 1 -0.5328 -1.9641 -1.0279 31 1 -1.2640 -4.1759 -1.0702 32 1 -0.6329 -4.5159 0.5729 33 1 1.0852 -6.2033 0.3968 34 1 0.2467 -6.6302 -1.1141 35 1 2.9051 -5.9145 -1.7435 36 1 3.9187 -10.3303 -1.0482 37 1 8.4996 -10.8846 -3.4471 38 1 8.0931 -8.3569 -3.9338 39 1 2.8620 -3.6576 -0.8654 40 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028951475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:21 Heat of formation + Delta-G solvation = 59.233215 kcal Electronic energy + Delta-G solvation = -23181.747489 eV Core-core repulsion = 19703.464268 eV Total energy + Delta-G solvation = -3478.283221 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.46546 -39.66443 -37.64973 -35.32684 -34.61070 -32.50637 -31.23101 -30.01461 -28.84396 -27.86914 -25.64663 -24.32648 -23.12799 -21.81896 -20.99845 -20.34616 -19.93544 -19.37212 -18.65098 -17.08459 -16.63905 -16.05529 -15.68940 -15.47990 -15.00124 -14.69915 -14.53981 -14.44546 -13.85535 -13.77184 -13.51911 -13.10647 -13.01862 -12.32645 -12.21990 -12.04560 -11.77863 -11.65121 -11.36529 -11.09432 -10.88165 -10.79083 -10.44700 -10.16531 -10.03200 -9.95838 -9.90214 -9.79911 -9.65574 -9.03619 -8.55799 -8.38125 -7.90570 -6.81023 -5.70857 -3.03081 0.33563 1.23038 1.77352 2.15457 2.35834 2.65237 3.17780 3.23004 3.41557 3.46771 3.48828 4.50783 4.55414 4.59626 4.71894 4.99626 5.12398 5.18181 5.25173 5.44066 5.50467 5.54823 5.64619 5.70095 5.75559 5.90607 6.05870 6.07281 6.19798 6.35839 6.40155 6.43148 6.52278 6.55134 6.69607 6.92787 7.07001 7.47303 7.57540 7.65901 7.84462 8.14175 8.27783 9.23648 9.84263 10.50838 11.41408 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.002662 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.283103 B =10514.944936 C =11771.829716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.081 0.919 14 C 0.134 3.866 15 N -0.717 5.717 16 C 0.590 3.410 17 O -0.536 6.536 18 C -0.235 4.235 19 C -0.033 4.033 20 C 0.023 3.977 21 N -0.558 5.558 22 H 0.419 0.581 23 C 0.057 3.943 24 C -0.171 4.171 25 C -0.188 4.188 26 S 0.172 5.828 27 C 0.141 3.859 28 H 0.252 0.748 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.401 0.599 36 H 0.149 0.851 37 H 0.178 0.822 38 H 0.148 0.852 39 H 0.036 0.964 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.523 -22.157 -7.523 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.099 0.901 14 C 0.010 3.990 15 N -0.368 5.368 16 C 0.376 3.624 17 O -0.415 6.415 18 C -0.355 4.355 19 C -0.070 4.070 20 C -0.091 4.091 21 N -0.159 5.159 22 H 0.257 0.743 23 C -0.077 4.077 24 C -0.201 4.201 25 C -0.310 4.310 26 S 0.436 5.564 27 C 0.015 3.985 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.166 0.834 37 H 0.195 0.805 38 H 0.165 0.835 39 H 0.054 0.946 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.892 -21.043 -7.420 25.284 hybrid contribution 0.778 -0.723 0.307 1.105 sum 12.669 -21.765 -7.114 26.169 Atomic orbital electron populations 1.69975 1.04927 1.25031 1.56818 1.24824 0.95697 0.97676 1.02199 0.86123 0.78705 0.83633 0.77486 1.21619 1.21800 1.20619 1.19062 0.91126 0.82561 1.42979 0.90438 1.44484 1.01706 1.00924 1.86117 1.21162 0.84443 0.88386 1.00868 1.22852 0.95232 0.99651 0.99541 1.22632 0.98733 0.91716 1.00815 0.90080 1.21465 0.84208 0.94440 0.98845 1.45924 1.23998 1.10021 1.56810 1.16817 0.83716 0.82306 0.79594 1.90827 1.53806 1.54881 1.41982 1.23786 1.01773 0.98120 1.11847 1.19208 0.92378 0.96534 0.98833 1.17994 0.95035 0.88425 1.07617 1.41898 1.16841 1.10671 1.46494 0.74299 1.21875 0.92703 0.94956 0.98144 1.20159 0.96557 0.95160 1.08206 1.23237 1.01982 0.97190 1.08609 1.83932 1.10687 1.08224 1.53591 1.21580 0.94063 0.86669 0.96215 0.93764 0.94103 0.93330 0.91930 0.92164 0.91008 0.91309 0.76475 0.83357 0.80492 0.83455 0.94563 0.96276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.14 10.36 55.49 0.57 -26.57 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.14 29.56 -169.99 -5.02 17.12 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.40 10.26 -15.06 -0.15 -6.56 16 8 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 9 N -0.61 -15.46 3.39 -170.07 -0.58 -16.04 16 10 C 0.18 4.26 5.38 -3.07 -0.02 4.24 16 11 C -0.13 -2.44 6.42 -24.89 -0.16 -2.60 16 12 C -0.12 -2.00 3.10 -88.47 -0.27 -2.28 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 14 C 0.13 1.98 5.12 -4.04 -0.02 1.96 16 15 N -0.72 -10.00 5.40 -61.70 -0.33 -10.34 16 16 C 0.59 8.75 7.77 -12.97 -0.10 8.65 16 17 O -0.54 -9.45 16.77 5.16 0.09 -9.36 16 18 C -0.23 -2.99 6.38 -37.17 -0.24 -3.23 16 19 C -0.03 -0.38 9.88 -40.23 -0.40 -0.78 16 20 C 0.02 0.24 7.67 -84.02 -0.64 -0.41 16 21 N -0.56 -3.80 6.21 -10.90 -0.07 -3.86 16 22 H 0.42 1.53 8.96 -40.82 -0.37 1.16 16 23 C 0.06 0.34 11.85 -16.92 -0.20 0.14 16 24 C -0.17 -1.42 10.85 -39.60 -0.43 -1.85 16 25 C -0.19 -2.03 7.31 -38.28 -0.28 -2.31 16 26 S 0.17 1.92 22.29 -107.50 -2.40 -0.48 16 27 C 0.14 2.86 6.41 -2.53 -0.02 2.84 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.04 1.10 7.62 -51.93 -0.40 0.70 16 30 H 0.05 1.30 7.29 -51.93 -0.38 0.92 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 33 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.40 5.10 7.40 -40.82 -0.30 4.79 16 36 H 0.15 1.57 8.00 -52.49 -0.42 1.15 16 37 H 0.18 0.34 8.06 -52.49 -0.42 -0.09 16 38 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.02 0.40 8.01 -51.93 -0.42 -0.01 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -34.28 347.45 -10.73 -45.01 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.20 Total: 1.77 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -3.03 Total: -2.49 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.40 Total: -56.81 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.40 Total: -0.48 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.28 -10.73 -45.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028951475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.247 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds