Wall clock time and date at job start Tue Mar 31 2020 12:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09004 * 111.00584 * 277.42534 * 12 11 10 14 14 C 1.52998 * 111.00283 * 153.57810 * 12 11 10 15 15 N 1.46504 * 109.47171 * 181.35255 * 14 12 11 16 16 C 1.34773 * 120.00257 * 180.02562 * 15 14 12 17 17 O 1.21733 * 119.99720 * 359.97438 * 16 15 14 18 18 C 1.46414 * 120.00346 * 179.97438 * 16 15 14 19 19 C 1.35777 * 124.96239 * 179.71845 * 18 16 15 20 20 C 1.38867 * 115.18565 * 179.82388 * 19 18 16 21 21 N 1.39742 * 139.91343 * 180.11617 * 20 19 18 22 22 H 0.97004 * 125.63469 * 0.30397 * 21 20 19 23 23 C 1.36217 * 108.73388 * 180.32609 * 21 20 19 24 24 C 1.34506 * 109.29677 * 359.97438 * 23 21 20 25 25 C 1.38241 * 113.39118 * 0.45395 * 20 19 18 26 26 S 1.75617 * 124.95530 * 0.02562 * 18 16 15 27 27 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 28 28 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 30 30 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 31 31 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 32 32 H 1.08993 * 110.87182 * 96.23712 * 11 10 9 33 33 H 1.09005 * 109.47074 * 301.34528 * 14 12 11 34 34 H 1.08999 * 109.47392 * 61.34922 * 14 12 11 35 35 H 0.96996 * 119.99481 * 359.97438 * 15 14 12 36 36 H 1.07999 * 122.40275 * 0.02595 * 19 18 16 37 37 H 1.08001 * 125.34899 * 180.02562 * 23 21 20 38 38 H 1.08002 * 126.07691 * 179.97438 * 24 23 21 39 39 H 1.09002 * 110.36346 * 322.70225 * 27 9 7 40 40 H 1.08999 * 110.37028 * 84.91483 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9146 -4.4021 -2.0770 14 6 1.0712 -6.0618 -0.6839 15 7 2.3370 -6.5297 -1.2541 16 6 2.7115 -7.8151 -1.0993 17 8 1.9981 -8.5872 -0.4854 18 6 3.9762 -8.2829 -1.6696 19 6 4.4529 -9.5503 -1.5703 20 6 5.6747 -9.7726 -2.1918 21 7 6.5912 -10.8047 -2.4098 22 1 6.4972 -11.7190 -2.0995 23 6 7.6389 -10.3148 -3.1294 24 6 7.4323 -9.0101 -3.3832 25 6 6.1950 -8.6447 -2.7987 26 16 5.1018 -7.2846 -2.5755 27 6 1.9495 -3.7169 -0.2720 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5671 -2.1845 0.7439 30 1 -0.5328 -1.9641 -1.0279 31 1 -1.2640 -4.1759 -1.0702 32 1 -0.6329 -4.5159 0.5729 33 1 1.0852 -6.2033 0.3968 34 1 0.2467 -6.6302 -1.1141 35 1 2.9051 -5.9145 -1.7435 36 1 3.9187 -10.3303 -1.0482 37 1 8.4996 -10.8846 -3.4471 38 1 8.0931 -8.3569 -3.9338 39 1 2.8620 -3.6576 -0.8654 40 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028951475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:21 Heat of formation + Delta-G solvation = 36.212243 kcal Electronic energy + Delta-G solvation = -23182.745753 eV Core-core repulsion = 19703.464268 eV Total energy + Delta-G solvation = -3479.281485 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.11602 -40.83190 -39.26327 -36.29008 -35.88684 -34.33608 -31.90554 -31.70084 -30.24659 -29.03788 -27.29111 -25.71581 -24.33096 -22.70064 -21.98366 -21.58966 -21.47589 -20.55751 -19.41864 -18.81787 -17.84439 -17.29131 -16.73251 -16.61073 -16.46843 -16.10537 -15.63228 -15.51821 -15.21929 -14.79586 -14.65486 -14.37785 -13.96805 -13.85415 -13.66296 -13.43348 -13.04352 -12.96378 -12.76889 -12.65161 -12.49862 -12.01697 -11.98847 -11.88653 -11.84359 -11.54997 -11.46535 -11.20357 -10.67453 -10.66859 -10.21213 -9.13538 -8.88487 -8.62561 -7.85327 -5.19657 -0.50549 0.42792 0.96995 1.37930 1.46788 1.48638 1.57582 1.72901 1.90946 2.14706 2.30661 2.50489 3.32559 3.58823 3.68071 3.85479 3.96313 4.01450 4.03117 4.17431 4.23863 4.43377 4.56920 4.62580 4.66940 4.75605 4.81592 4.91266 4.98742 5.04957 5.06640 5.08689 5.27418 5.42226 5.47699 5.55982 5.68585 5.78941 5.79854 6.21208 6.36707 6.62199 7.02794 7.11346 7.78830 8.43793 9.25837 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.002662 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.283103 B =10514.944936 C =11771.829716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.082 0.918 9 N -0.628 5.628 10 C 0.181 3.819 11 C -0.121 4.121 12 C -0.098 4.098 13 H 0.090 0.910 14 C 0.144 3.856 15 N -0.714 5.714 16 C 0.592 3.408 17 O -0.572 6.572 18 C -0.269 4.269 19 C -0.021 4.021 20 C -0.005 4.005 21 N -0.546 5.546 22 H 0.435 0.565 23 C 0.091 3.909 24 C -0.202 4.202 25 C -0.197 4.197 26 S 0.166 5.834 27 C 0.137 3.863 28 H 0.247 0.753 29 H 0.003 0.997 30 H 0.016 0.984 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.407 0.593 36 H 0.151 0.849 37 H 0.227 0.773 38 H 0.163 0.837 39 H 0.046 0.954 40 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.043 -24.307 -8.704 29.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.056 3.944 11 C -0.159 4.159 12 C -0.117 4.117 13 H 0.108 0.892 14 C 0.021 3.979 15 N -0.364 5.364 16 C 0.380 3.620 17 O -0.454 6.454 18 C -0.389 4.389 19 C -0.058 4.058 20 C -0.118 4.118 21 N -0.148 5.148 22 H 0.276 0.724 23 C -0.044 4.044 24 C -0.231 4.231 25 C -0.320 4.320 26 S 0.429 5.571 27 C 0.012 3.988 28 H 0.056 0.944 29 H 0.021 0.979 30 H 0.034 0.966 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.242 0.758 36 H 0.169 0.831 37 H 0.243 0.757 38 H 0.180 0.820 39 H 0.064 0.936 40 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 14.428 -23.227 -8.600 28.664 hybrid contribution 0.172 -0.184 0.642 0.690 sum 14.600 -23.411 -7.958 28.716 Atomic orbital electron populations 1.70195 1.06358 1.25292 1.58085 1.25679 0.96601 1.01074 1.02586 0.85070 0.77837 0.79170 0.77341 1.21239 1.22263 1.19212 1.19462 0.91646 0.83890 1.42215 0.89998 1.44813 1.02537 1.02170 1.85968 1.20946 0.83844 0.91992 0.97579 1.22714 0.96826 0.95249 1.01154 1.22438 0.96308 0.92330 1.00669 0.89218 1.21272 0.85158 0.92850 0.98622 1.45837 1.23774 1.10101 1.56681 1.17045 0.84077 0.81984 0.78906 1.90795 1.55120 1.55677 1.43759 1.23537 1.01867 0.99100 1.14350 1.19346 0.92651 0.96124 0.97671 1.17970 0.95442 0.89674 1.08721 1.42032 1.16095 1.10923 1.45740 0.72386 1.22684 0.92600 0.94340 0.94749 1.20570 0.96244 0.96717 1.09536 1.23621 1.02841 0.96901 1.08666 1.83786 1.10894 1.08685 1.53742 1.21748 0.95355 0.84986 0.96740 0.94396 0.97917 0.96593 0.89410 0.90867 0.91669 0.90015 0.75753 0.83120 0.75670 0.81987 0.93561 0.96380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.00 10.36 21.65 0.22 -57.77 16 2 C -0.07 -3.83 5.48 84.86 0.46 -3.37 16 3 Si 0.98 46.20 29.56 68.60 2.03 48.23 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.24 -13.81 10.26 84.03 0.86 -12.94 16 8 H 0.08 4.44 7.84 -2.91 -0.02 4.42 16 9 N -0.63 -32.63 3.39 -691.98 -2.35 -34.98 16 10 C 0.18 9.04 5.38 86.73 0.47 9.51 16 11 C -0.12 -4.32 6.42 31.78 0.20 -4.11 16 12 C -0.10 -3.17 3.10 -9.40 -0.03 -3.20 16 13 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 14 C 0.14 4.10 5.12 86.38 0.44 4.54 16 15 N -0.71 -19.47 5.40 -467.31 -2.52 -22.00 16 16 C 0.59 17.54 7.77 86.37 0.67 18.21 16 17 O -0.57 -20.25 16.77 -4.45 -0.07 -20.33 16 18 C -0.27 -6.83 6.38 23.83 0.15 -6.68 16 19 C -0.02 -0.48 9.88 21.85 0.22 -0.26 16 20 C -0.01 -0.10 7.67 38.03 0.29 0.20 16 21 N -0.55 -5.62 6.21 -188.39 -1.17 -6.79 16 22 H 0.44 1.64 8.96 -92.71 -0.83 0.81 16 23 C 0.09 0.68 11.85 83.16 0.99 1.67 16 24 C -0.20 -2.75 10.85 22.26 0.24 -2.51 16 25 C -0.20 -3.96 7.31 23.11 0.17 -3.79 16 26 S 0.17 3.63 22.29 -56.49 -1.26 2.38 16 27 C 0.14 5.50 6.41 86.85 0.56 6.06 16 28 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.00 0.15 7.62 -2.39 -0.02 0.13 16 30 H 0.02 0.88 7.29 -2.39 -0.02 0.86 16 31 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.07 2.44 8.04 -2.39 -0.02 2.42 16 33 H 0.06 1.97 8.10 -2.38 -0.02 1.95 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.41 10.10 7.40 -92.71 -0.69 9.41 16 36 H 0.15 3.16 8.00 -2.91 -0.02 3.14 16 37 H 0.23 -0.57 8.06 -2.91 -0.02 -0.59 16 38 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.02 0.75 8.01 -2.39 -0.02 0.73 16 Total: -1.00 -77.08 347.45 0.14 -76.94 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -0.43 Total: 11.01 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.69 Total: 3.32 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -5.82 Total: -121.54 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.07 Total: -20.33 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.26 Total: 2.38 kcal Total: -77.08 0.14 -76.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028951475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.149 kcal (2) G-P(sol) polarization free energy of solvation -77.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds