Wall clock time and date at job start Tue Mar 31 2020 12:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47864 * 126.94685 * 0.02779 * 9 7 2 11 11 C 1.56021 * 105.10416 * 181.97612 * 10 9 7 12 12 H 1.09001 * 116.24774 * 158.83369 * 11 10 9 13 13 C 1.57083 * 99.60735 * 32.80765 * 11 10 9 14 14 C 1.49290 * 126.93985 * 179.71194 * 9 7 2 15 15 H 1.08997 * 116.15677 * 15.86358 * 14 9 7 16 16 C 1.58432 * 103.70199 * 246.54814 * 14 9 7 17 17 N 1.47873 * 104.83272 * 288.54850 * 16 14 9 18 18 C 1.34775 * 126.94763 * 182.30266 * 17 16 14 19 19 O 1.21630 * 120.00045 * 179.97438 * 18 17 16 20 20 C 1.47263 * 119.99893 * 0.02562 * 18 17 16 21 21 C 1.35211 * 123.14257 * 180.02562 * 20 18 17 22 22 S 1.70938 * 108.82688 * 179.97438 * 21 20 18 23 23 C 1.70772 * 91.13142 * 359.97438 * 22 21 20 24 24 C 1.50697 * 124.72113 * 180.02562 * 23 22 21 25 25 C 1.53008 * 117.49807 * 8.59880 * 24 23 22 26 26 C 1.53001 * 59.99852 * 252.51113 * 25 24 23 27 27 N 1.28650 * 110.55675 * 359.76596 * 23 22 21 28 28 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 29 29 H 1.08995 * 110.31873 * 300.88539 * 10 9 7 30 30 H 1.09002 * 110.31321 * 63.07753 * 10 9 7 31 31 H 1.09001 * 112.36900 * 64.26801 * 13 11 10 32 32 H 1.09000 * 112.36910 * 191.71305 * 13 11 10 33 33 H 1.08995 * 110.19325 * 169.86136 * 16 14 9 34 34 H 1.08997 * 110.78992 * 47.53599 * 16 14 9 35 35 H 1.07991 * 125.58585 * 359.96113 * 21 20 18 36 36 H 1.09000 * 115.55144 * 154.30263 * 24 23 22 37 37 H 1.08999 * 117.49851 * 0.02562 * 25 24 23 38 38 H 1.09001 * 117.49340 * 145.01722 * 25 24 23 39 39 H 1.09001 * 117.49697 * 252.50563 * 26 25 24 40 40 H 1.08996 * 117.51788 * 107.48961 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5668 -0.0006 11 6 -0.3638 -4.1104 0.0488 12 1 -1.3347 -4.4467 0.4124 13 6 0.8873 -4.5275 0.9022 14 6 1.9100 -3.7617 -0.0177 15 1 2.9664 -3.8365 0.2403 16 6 1.4812 -4.3399 -1.4290 17 7 0.0262 -4.5774 -1.3145 18 6 -0.7842 -5.1083 -2.2515 19 8 -1.9703 -5.2480 -2.0213 20 6 -0.2333 -5.5203 -3.5536 21 6 -0.9874 -6.0587 -4.5383 22 16 0.0168 -6.3976 -5.8795 23 6 1.3845 -5.8007 -5.0492 24 6 2.7801 -5.7544 -5.6160 25 6 2.9517 -6.0892 -7.0991 26 6 3.4181 -7.0814 -6.0318 27 7 1.0567 -5.3911 -3.8745 28 1 -0.4850 0.8400 0.0040 29 1 -0.5781 -2.0936 0.8793 30 1 -0.5774 -2.1511 -0.9095 31 1 0.8524 -4.1240 1.9141 32 1 1.0524 -5.6050 0.8971 33 1 2.0031 -5.2762 -1.6264 34 1 1.6857 -3.6192 -2.2207 35 1 -2.0500 -6.2444 -4.4860 36 1 3.4343 -4.9921 -5.1928 37 1 2.0552 -6.3425 -7.6649 38 1 3.7189 -5.5470 -7.6518 39 1 4.4921 -7.1921 -5.8826 40 1 2.8286 -7.9880 -5.8952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032815242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:57 Heat of formation + Delta-G solvation = 103.243018 kcal Electronic energy + Delta-G solvation = -24656.478501 eV Core-core repulsion = 21180.103688 eV Total energy + Delta-G solvation = -3476.374812 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49311 -39.32743 -37.80147 -37.02429 -33.56406 -31.52206 -30.49128 -28.99266 -28.37100 -26.06936 -25.14737 -24.19461 -22.82972 -22.74845 -20.85916 -20.07005 -19.68284 -18.79640 -18.03971 -16.78373 -16.44378 -15.88069 -15.67583 -15.27377 -14.99089 -14.52460 -14.03216 -13.93109 -13.71094 -13.21848 -12.97307 -12.51262 -12.35819 -11.98935 -11.87068 -11.72373 -11.55946 -11.24198 -11.14170 -10.97269 -10.89251 -10.82753 -10.70768 -10.54424 -10.21536 -10.02604 -9.77719 -9.67451 -9.60506 -9.55242 -8.85281 -8.66439 -7.91560 -6.85964 -5.72765 -3.06396 0.49003 1.14136 1.54644 2.08272 3.36417 3.39353 3.44238 3.47367 3.51547 3.68598 3.79361 4.43918 4.46041 4.59100 4.68218 4.95482 5.07526 5.20803 5.24924 5.25357 5.33334 5.42711 5.48645 5.59795 5.69269 5.70710 5.72236 5.81528 5.86910 6.20367 6.30404 6.40195 6.48833 6.62505 6.68218 6.85249 7.44348 7.48090 7.55986 7.75664 8.10040 8.14928 8.55614 9.14521 9.75555 10.45431 11.39671 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.004082 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.793071 B = 6858.228895 C = 7740.358356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.175 3.825 11 C 0.097 3.903 12 H 0.113 0.887 13 C -0.150 4.150 14 C 0.137 3.863 15 H 0.106 0.894 16 C 0.102 3.898 17 N -0.585 5.585 18 C 0.600 3.400 19 O -0.553 6.553 20 C 0.029 3.971 21 C -0.232 4.232 22 S 0.188 5.812 23 C 0.056 3.944 24 C -0.082 4.082 25 C -0.170 4.170 26 C -0.160 4.160 27 N -0.427 5.427 28 H 0.253 0.747 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.188 0.812 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 -16.016 -12.209 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.050 3.950 11 C -0.005 4.005 12 H 0.131 0.869 13 C -0.189 4.189 14 C 0.028 3.972 15 H 0.124 0.876 16 C -0.023 4.023 17 N -0.316 5.316 18 C 0.386 3.614 19 O -0.433 6.433 20 C -0.106 4.106 21 C -0.374 4.374 22 S 0.445 5.555 23 C -0.223 4.223 24 C -0.104 4.104 25 C -0.208 4.208 26 C -0.198 4.198 27 N -0.141 5.141 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.205 0.795 36 H 0.154 0.846 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.362 -15.989 -12.738 20.903 hybrid contribution -0.088 1.333 0.748 1.531 sum 4.274 -14.656 -11.990 19.412 Atomic orbital electron populations 1.69928 1.04943 1.25096 1.56754 1.24812 0.95669 0.97672 1.02229 0.86049 0.78690 0.83825 0.77206 1.20464 1.21861 1.21763 1.19103 0.90428 0.82107 1.43937 0.90111 1.45249 1.01321 0.99451 1.86127 1.21914 0.84834 0.86930 1.01292 1.24388 0.97984 0.97914 0.80257 0.86883 1.24176 0.96721 0.98925 0.99112 1.23803 0.96292 0.86058 0.91065 0.87579 1.23712 0.78660 0.99462 1.00490 1.48960 1.10275 1.57946 1.14428 1.16627 0.85023 0.78106 0.81687 1.90770 1.14862 1.57982 1.79656 1.20505 0.88132 1.04333 0.97597 1.26553 1.06824 1.06685 0.97302 1.82554 0.99030 1.57023 1.16866 1.26251 0.99682 1.02743 0.93642 1.20410 0.90653 1.01878 0.97465 1.23148 1.03911 1.03267 0.90482 1.23137 1.01823 0.92873 1.02012 1.67033 1.15499 1.16544 1.15047 0.93702 0.92511 0.93552 0.89629 0.91702 0.92394 0.90681 0.79466 0.84587 0.88411 0.87185 0.87403 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 10.56 55.49 0.59 -26.81 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -6.21 10.38 -15.06 -0.16 -6.37 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -14.90 3.02 -154.63 -0.47 -15.37 16 10 C 0.18 4.38 4.75 -1.68 -0.01 4.37 16 11 C 0.10 1.99 5.19 -62.55 -0.32 1.66 16 12 H 0.11 2.22 8.05 -51.93 -0.42 1.81 16 13 C -0.15 -2.68 6.86 -22.10 -0.15 -2.83 16 14 C 0.14 2.70 5.63 -60.96 -0.34 2.35 16 15 H 0.11 1.88 8.14 -51.93 -0.42 1.45 16 16 C 0.10 1.97 5.00 -0.29 0.00 1.97 16 17 N -0.59 -11.99 2.95 -156.50 -0.46 -12.45 16 18 C 0.60 12.36 7.87 -12.59 -0.10 12.26 16 19 O -0.55 -12.46 17.06 5.25 0.09 -12.37 16 20 C 0.03 0.51 6.63 -84.53 -0.56 -0.05 16 21 C -0.23 -3.28 10.62 29.65 0.31 -2.96 16 22 S 0.19 1.97 21.65 -107.50 -2.33 -0.36 16 23 C 0.06 0.71 6.99 -13.61 -0.10 0.62 16 24 C -0.08 -0.79 6.33 -91.77 -0.58 -1.38 16 25 C -0.17 -1.15 10.01 -26.73 -0.27 -1.42 16 26 C -0.16 -1.12 10.23 -26.73 -0.27 -1.39 16 27 N -0.43 -6.93 7.90 -8.51 -0.07 -7.00 16 28 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.06 1.54 7.47 -51.93 -0.39 1.15 16 30 H 0.05 1.34 7.67 -51.93 -0.40 0.94 16 31 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.01 7.60 -51.93 -0.39 0.62 16 34 H 0.07 1.64 7.80 -51.93 -0.41 1.24 16 35 H 0.19 2.43 8.03 -52.49 -0.42 2.00 16 36 H 0.14 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.10 0.61 7.21 -51.93 -0.37 0.24 16 38 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -33.31 342.94 -10.45 -43.76 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.30 Total: 1.79 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -2.64 Total: 6.54 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.41 Total: -61.62 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.33 Total: -0.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.31 -10.45 -43.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032815242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.006 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds