Wall clock time and date at job start Tue Mar 31 2020 12:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47864 * 126.94685 * 0.02779 * 9 7 2 11 11 C 1.56021 * 105.10416 * 181.97612 * 10 9 7 12 12 H 1.09001 * 116.24774 * 158.83369 * 11 10 9 13 13 C 1.57083 * 99.60735 * 32.80765 * 11 10 9 14 14 C 1.49290 * 126.93985 * 179.71194 * 9 7 2 15 15 H 1.08997 * 116.15677 * 15.86358 * 14 9 7 16 16 C 1.58432 * 103.70199 * 246.54814 * 14 9 7 17 17 N 1.47873 * 104.83272 * 288.54850 * 16 14 9 18 18 C 1.34775 * 126.94763 * 182.30266 * 17 16 14 19 19 O 1.21630 * 120.00045 * 179.97438 * 18 17 16 20 20 C 1.47263 * 119.99893 * 0.02562 * 18 17 16 21 21 C 1.35211 * 123.14257 * 180.02562 * 20 18 17 22 22 S 1.70938 * 108.82688 * 179.97438 * 21 20 18 23 23 C 1.70772 * 91.13142 * 359.97438 * 22 21 20 24 24 C 1.50697 * 124.72113 * 180.02562 * 23 22 21 25 25 C 1.53008 * 117.49807 * 8.59880 * 24 23 22 26 26 C 1.53001 * 59.99852 * 252.51113 * 25 24 23 27 27 N 1.28650 * 110.55675 * 359.76596 * 23 22 21 28 28 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 29 29 H 1.08995 * 110.31873 * 300.88539 * 10 9 7 30 30 H 1.09002 * 110.31321 * 63.07753 * 10 9 7 31 31 H 1.09001 * 112.36900 * 64.26801 * 13 11 10 32 32 H 1.09000 * 112.36910 * 191.71305 * 13 11 10 33 33 H 1.08995 * 110.19325 * 169.86136 * 16 14 9 34 34 H 1.08997 * 110.78992 * 47.53599 * 16 14 9 35 35 H 1.07991 * 125.58585 * 359.96113 * 21 20 18 36 36 H 1.09000 * 115.55144 * 154.30263 * 24 23 22 37 37 H 1.08999 * 117.49851 * 0.02562 * 25 24 23 38 38 H 1.09001 * 117.49340 * 145.01722 * 25 24 23 39 39 H 1.09001 * 117.49697 * 252.50563 * 26 25 24 40 40 H 1.08996 * 117.51788 * 107.48961 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5668 -0.0006 11 6 -0.3638 -4.1104 0.0488 12 1 -1.3347 -4.4467 0.4124 13 6 0.8873 -4.5275 0.9022 14 6 1.9100 -3.7617 -0.0177 15 1 2.9664 -3.8365 0.2403 16 6 1.4812 -4.3399 -1.4290 17 7 0.0262 -4.5774 -1.3145 18 6 -0.7842 -5.1083 -2.2515 19 8 -1.9703 -5.2480 -2.0213 20 6 -0.2333 -5.5203 -3.5536 21 6 -0.9874 -6.0587 -4.5383 22 16 0.0168 -6.3976 -5.8795 23 6 1.3845 -5.8007 -5.0492 24 6 2.7801 -5.7544 -5.6160 25 6 2.9517 -6.0892 -7.0991 26 6 3.4181 -7.0814 -6.0318 27 7 1.0567 -5.3911 -3.8745 28 1 -0.4850 0.8400 0.0040 29 1 -0.5781 -2.0936 0.8793 30 1 -0.5774 -2.1511 -0.9095 31 1 0.8524 -4.1240 1.9141 32 1 1.0524 -5.6050 0.8971 33 1 2.0031 -5.2762 -1.6264 34 1 1.6857 -3.6192 -2.2207 35 1 -2.0500 -6.2444 -4.4860 36 1 3.4343 -4.9921 -5.1928 37 1 2.0552 -6.3425 -7.6649 38 1 3.7189 -5.5470 -7.6518 39 1 4.4921 -7.1921 -5.8826 40 1 2.8286 -7.9880 -5.8952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032815242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:57 Heat of formation + Delta-G solvation = 82.352342 kcal Electronic energy + Delta-G solvation = -24657.384388 eV Core-core repulsion = 21180.103688 eV Total energy + Delta-G solvation = -3477.280700 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.88696 -40.70834 -39.18028 -37.91812 -35.48859 -33.36154 -31.62784 -30.76452 -30.15883 -27.17717 -27.00158 -25.66767 -24.29070 -23.30238 -22.01592 -21.53807 -21.20559 -20.19036 -19.54036 -18.51817 -17.60621 -17.34041 -17.05027 -16.65969 -16.51267 -15.82625 -15.51164 -15.29279 -15.01962 -14.64740 -14.58071 -13.90514 -13.62074 -13.39418 -13.28977 -13.17176 -12.98002 -12.83526 -12.75615 -12.37738 -12.34117 -12.18668 -12.01271 -11.91584 -11.87502 -11.55994 -11.50177 -11.28504 -10.86525 -10.67696 -10.57535 -9.90059 -9.53419 -8.91405 -7.85980 -5.21715 -0.57529 0.18969 0.51305 0.85958 1.45003 1.46117 1.56512 1.92484 2.22451 2.47254 2.73500 2.99218 3.30831 3.36168 3.55958 3.73110 3.81314 3.83618 3.96952 4.03586 4.06038 4.13182 4.15607 4.40000 4.57013 4.65807 4.69896 4.77024 4.89328 4.97046 4.99094 5.02576 5.10175 5.10471 5.22715 5.25748 5.41905 5.49386 5.61762 6.07683 6.40969 6.53693 6.99918 7.01222 7.68739 8.39948 9.25824 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.004082 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.793071 B = 6858.228895 C = 7740.358356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.072 4.072 3 Si 0.979 3.021 4 H -0.257 1.257 5 H -0.301 1.301 6 H -0.294 1.294 7 C -0.230 4.230 8 H 0.096 0.904 9 N -0.616 5.616 10 C 0.190 3.810 11 C 0.099 3.901 12 H 0.119 0.881 13 C -0.125 4.125 14 C 0.133 3.867 15 H 0.136 0.864 16 C 0.120 3.880 17 N -0.593 5.593 18 C 0.592 3.408 19 O -0.585 6.585 20 C -0.007 4.007 21 C -0.244 4.244 22 S 0.295 5.705 23 C 0.044 3.956 24 C -0.114 4.114 25 C -0.153 4.153 26 C -0.145 4.145 27 N -0.463 5.463 28 H 0.244 0.756 29 H 0.024 0.976 30 H -0.008 1.008 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.193 0.807 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 -18.358 -13.966 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.264 4.264 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.228 1.228 6 H -0.221 1.221 7 C -0.358 4.358 8 H 0.113 0.887 9 N -0.340 5.340 10 C 0.064 3.936 11 C -0.004 4.004 12 H 0.136 0.864 13 C -0.164 4.164 14 C 0.026 3.974 15 H 0.153 0.847 16 C -0.004 4.004 17 N -0.323 5.323 18 C 0.379 3.621 19 O -0.467 6.467 20 C -0.142 4.142 21 C -0.387 4.387 22 S 0.554 5.446 23 C -0.234 4.234 24 C -0.136 4.136 25 C -0.191 4.191 26 C -0.184 4.184 27 N -0.178 5.178 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.010 0.990 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.210 0.790 36 H 0.144 0.856 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.919 -18.382 -14.514 24.422 hybrid contribution -0.851 1.971 1.118 2.420 sum 6.068 -16.411 -13.396 22.036 Atomic orbital electron populations 1.70176 1.06684 1.25088 1.58875 1.25686 0.96429 1.01244 1.03083 0.84993 0.78564 0.79419 0.76285 1.18126 1.22827 1.22089 1.19598 0.91284 0.83102 1.41846 0.88670 1.45504 1.01441 1.01122 1.85919 1.21500 0.85061 0.89899 0.97163 1.24277 0.99853 0.94540 0.81713 0.86364 1.24075 0.93451 1.00688 0.98178 1.24213 0.98127 0.83338 0.91746 0.84652 1.23451 0.78295 0.99665 0.99021 1.49041 1.10785 1.58048 1.14421 1.17212 0.84724 0.77407 0.82753 1.90722 1.16081 1.59364 1.80546 1.20151 0.89564 1.07438 0.97027 1.26874 1.07798 1.05426 0.98557 1.82102 0.95493 1.54065 1.12946 1.26836 1.01857 1.01553 0.93183 1.20523 0.89347 1.03873 0.99832 1.23307 1.04552 1.02354 0.88922 1.23272 1.02678 0.91721 1.00740 1.66974 1.15075 1.18489 1.17258 0.94711 0.95746 0.98981 0.89235 0.88176 0.89880 0.93749 0.78956 0.85597 0.87611 0.85483 0.85844 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.22 10.56 21.65 0.23 -59.99 16 2 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 3 Si 0.98 46.45 29.55 68.60 2.03 48.47 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.23 -12.67 10.38 84.03 0.87 -11.80 16 8 H 0.10 4.86 7.83 -2.91 -0.02 4.84 16 9 N -0.62 -31.34 3.02 -643.13 -1.94 -33.29 16 10 C 0.19 10.04 4.75 87.17 0.41 10.45 16 11 C 0.10 4.17 5.19 46.93 0.24 4.41 16 12 H 0.12 4.81 8.05 -2.39 -0.02 4.79 16 13 C -0.12 -4.26 6.86 33.60 0.23 -4.03 16 14 C 0.13 5.08 5.63 47.96 0.27 5.35 16 15 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 16 C 0.12 4.63 5.00 88.06 0.44 5.07 16 17 N -0.59 -24.83 2.95 -767.30 -2.27 -27.10 16 18 C 0.59 25.19 7.87 86.62 0.68 25.87 16 19 O -0.58 -27.44 17.06 -4.13 -0.07 -27.51 16 20 C -0.01 -0.25 6.63 40.56 0.27 0.02 16 21 C -0.24 -6.72 10.62 67.12 0.71 -6.00 16 22 S 0.30 5.38 21.65 -56.49 -1.22 4.16 16 23 C 0.04 1.05 6.99 88.57 0.62 1.67 16 24 C -0.11 -1.95 6.33 -11.54 -0.07 -2.02 16 25 C -0.15 -1.52 10.01 30.60 0.31 -1.21 16 26 C -0.15 -1.53 10.23 30.59 0.31 -1.22 16 27 N -0.46 -14.90 7.90 -180.83 -1.43 -16.33 16 28 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.02 1.42 7.47 -2.39 -0.02 1.40 16 30 H -0.01 -0.50 7.67 -2.39 -0.02 -0.52 16 31 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.08 2.80 7.60 -2.39 -0.02 2.78 16 34 H 0.04 1.99 7.80 -2.39 -0.02 1.97 16 35 H 0.19 4.91 8.03 -2.92 -0.02 4.89 16 36 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.11 0.87 7.21 -2.39 -0.02 0.86 16 38 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -77.91 342.94 2.15 -75.76 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.06 Total: 12.99 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: 5.76 Total: 22.83 kcal Atomic # 7 Polarization: -131.30 SS G_CDS: -5.41 Total: -136.71 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.07 Total: -27.51 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -1.22 Total: 4.16 kcal Total: -77.91 2.15 -75.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032815242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.110 kcal (2) G-P(sol) polarization free energy of solvation -77.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds