Wall clock time and date at job start Tue Mar 31 2020 12:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 110.64330 * 2 1 4 4 C 1.34778 * 120.00045 * 61.68612 * 3 2 1 5 5 O 1.21731 * 120.00037 * 0.02562 * 4 3 2 6 6 C 1.46453 * 120.00005 * 179.97438 * 4 3 2 7 7 C 1.37466 * 125.80497 * 179.69067 * 6 4 3 8 8 C 1.40657 * 107.55230 * 179.84929 * 7 6 4 9 9 S 1.76024 * 142.39545 * 180.02562 * 8 7 6 10 10 C 1.75594 * 91.30995 * 180.37305 * 9 8 7 11 11 C 1.32768 * 110.47640 * 0.02562 * 10 9 8 12 12 C 1.38243 * 108.03582 * 0.42044 * 8 7 6 13 13 N 1.37926 * 125.80412 * 0.02562 * 6 4 3 14 14 H 0.96999 * 125.68643 * 359.97438 * 13 6 4 15 15 C 1.55156 * 110.71729 * 236.65796 * 2 1 3 16 16 C 1.55130 * 101.48390 * 205.97409 * 15 2 1 17 17 N 1.47418 * 104.72521 * 37.29817 * 16 15 2 18 18 C 1.36932 * 125.65039 * 155.81624 * 17 16 15 19 19 H 1.08006 * 120.00502 * 196.02476 * 18 17 16 20 20 C 1.38814 * 120.00179 * 16.02147 * 18 17 16 21 21 N 1.31621 * 120.00528 * 201.19650 * 20 18 17 22 22 Si 1.86801 * 119.99585 * 21.20187 * 20 18 17 23 23 H 1.48500 * 109.47034 * 275.67223 * 22 20 18 24 24 H 1.48498 * 109.47445 * 35.66983 * 22 20 18 25 25 H 1.48500 * 109.47211 * 155.67212 * 22 20 18 26 26 C 1.47021 * 108.70111 * 335.55539 * 17 16 15 27 27 H 1.09002 * 109.47349 * 298.31597 * 1 2 3 28 28 H 1.09006 * 109.46555 * 58.31161 * 1 2 3 29 29 H 1.08998 * 109.47657 * 178.31003 * 1 2 3 30 30 H 0.96999 * 119.99727 * 241.68248 * 3 2 1 31 31 H 1.07995 * 126.22053 * 359.97438 * 7 6 4 32 32 H 1.08000 * 124.75877 * 179.97438 * 10 9 8 33 33 H 1.08003 * 122.16077 * 180.02562 * 11 10 9 34 34 H 1.08993 * 111.00988 * 324.21419 * 15 2 1 35 35 H 1.08996 * 111.00026 * 88.02988 * 15 2 1 36 36 H 1.09006 * 110.49483 * 278.45460 * 16 15 2 37 37 H 1.09000 * 110.34430 * 156.06412 * 16 15 2 38 38 H 0.96992 * 120.00032 * 179.97438 * 21 20 18 39 39 H 1.08998 * 109.88363 * 120.70397 * 26 17 16 40 40 H 1.09005 * 109.87939 * 241.71415 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7660 2.1967 1.0276 5 8 1.0839 1.8033 1.9559 6 6 2.2828 3.5670 1.0278 7 6 2.0666 4.5079 2.0065 8 6 2.7384 5.6822 1.6217 9 16 3.0655 7.3338 2.1355 10 6 4.0142 7.6384 0.6896 11 6 4.0489 6.5568 -0.0796 12 6 3.3504 5.4461 0.4048 13 7 3.0638 4.1350 0.0431 14 1 3.3635 3.6931 -0.7667 15 6 2.0789 -0.7977 -1.2124 16 6 3.4665 -1.2469 -0.6839 17 7 3.2444 -1.5496 0.7417 18 6 4.0041 -2.3945 1.5060 19 1 3.6262 -2.7542 2.4516 20 6 5.2600 -2.7888 1.0653 21 7 5.8125 -3.8827 1.5454 22 14 6.1660 -1.7666 -0.2090 23 1 5.7091 -2.1519 -1.5684 24 1 5.8828 -0.3268 0.0189 25 1 7.6263 -2.0087 -0.0904 26 6 2.0759 -0.7892 1.2086 27 1 -0.3634 0.4875 0.9047 28 1 -0.3633 0.5399 -0.8745 29 1 -0.3634 -1.0272 -0.0303 30 1 2.5904 1.6842 -0.7395 31 1 1.4880 4.3697 2.9078 32 1 4.5005 8.5746 0.4582 33 1 4.5827 6.5358 -1.0182 34 1 1.4451 -1.6561 -1.4346 35 1 2.1844 -0.1557 -2.0869 36 1 4.1947 -0.4430 -0.7921 37 1 3.8030 -2.1385 -1.2130 38 1 6.6898 -4.1584 1.2372 39 1 1.3128 -1.4732 1.5801 40 1 2.3735 -0.1010 1.9998 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046746979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:31 Heat of formation + Delta-G solvation = 45.791444 kcal Electronic energy + Delta-G solvation = -24467.499649 eV Core-core repulsion = 20988.633549 eV Total energy + Delta-G solvation = -3478.866100 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.46776 -41.11692 -39.04030 -36.26734 -35.89669 -34.03241 -32.36831 -31.89410 -30.63890 -29.14367 -27.96984 -25.44752 -24.60384 -23.69017 -22.85600 -21.69993 -21.01323 -20.65708 -19.71554 -18.98712 -17.56936 -17.29182 -17.12262 -16.49969 -16.41260 -15.99027 -15.55342 -15.49229 -15.11275 -15.03203 -14.84311 -14.59170 -14.00997 -13.93965 -13.83335 -13.48773 -13.28516 -13.15087 -12.95440 -12.84489 -12.56974 -12.54492 -12.02795 -12.00403 -11.88737 -11.76730 -11.41142 -11.08823 -10.85114 -10.79129 -10.26667 -9.14431 -9.09885 -8.67124 -8.20328 -5.47818 -0.26963 0.56585 0.84251 1.14481 1.23230 1.34649 1.43682 1.71512 1.76581 2.02159 2.21755 2.36947 3.02202 3.24949 3.41116 3.71156 3.76142 3.80870 3.97643 4.00182 4.33780 4.36584 4.44421 4.51596 4.64980 4.74782 4.76224 4.78087 4.82419 4.90776 4.96059 5.01700 5.06502 5.14734 5.30612 5.40105 5.47451 5.56003 5.60834 6.05830 6.25630 6.44434 6.71461 7.03249 7.49223 8.03699 8.99993 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.003660 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.366942 B = 7649.464082 C = 8473.603851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.170 3.830 3 N -0.701 5.701 4 C 0.588 3.412 5 O -0.551 6.551 6 C -0.005 4.005 7 C -0.087 4.087 8 C -0.253 4.253 9 S 0.128 5.872 10 C -0.168 4.168 11 C -0.128 4.128 12 C 0.069 3.931 13 N -0.531 5.531 14 H 0.432 0.568 15 C -0.113 4.113 16 C 0.094 3.906 17 N -0.625 5.625 18 C -0.239 4.239 19 H 0.050 0.950 20 C -0.043 4.043 21 N -0.960 5.960 22 Si 0.959 3.041 23 H -0.256 1.256 24 H -0.271 1.271 25 H -0.311 1.311 26 C 0.133 3.867 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.408 0.592 31 H 0.150 0.850 32 H 0.209 0.791 33 H 0.170 0.830 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.029 0.971 37 H 0.050 0.950 38 H 0.263 0.737 39 H 0.033 0.967 40 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.113 25.429 -11.134 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.083 3.917 3 N -0.353 5.353 4 C 0.376 3.624 5 O -0.429 6.429 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.373 4.373 9 S 0.388 5.612 10 C -0.304 4.304 11 C -0.161 4.161 12 C -0.051 4.051 13 N -0.135 5.135 14 H 0.272 0.728 15 C -0.151 4.151 16 C -0.030 4.030 17 N -0.352 5.352 18 C -0.368 4.368 19 H 0.068 0.932 20 C -0.236 4.236 21 N -0.608 5.608 22 Si 0.787 3.213 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.240 1.240 26 C 0.007 3.993 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.244 0.756 31 H 0.167 0.833 32 H 0.225 0.775 33 H 0.188 0.812 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -7.804 25.710 -9.335 28.444 hybrid contribution 1.630 -1.250 -1.447 2.513 sum -6.173 24.461 -10.782 27.435 Atomic orbital electron populations 1.21980 0.91313 1.03458 1.03262 1.21251 0.94998 0.80008 0.95408 1.45757 1.54077 1.12230 1.23194 1.17089 0.79756 0.83273 0.82297 1.90840 1.40004 1.76025 1.36046 1.20114 1.04379 0.93920 0.93514 1.20521 1.02072 0.89755 0.99448 1.22946 1.11366 1.01111 1.01834 1.83937 1.52445 1.01625 1.23234 1.25733 1.04324 1.03507 0.96837 1.19210 1.03535 0.89532 1.03829 1.18843 1.03526 0.87009 0.95714 1.41860 1.42359 1.09335 1.19913 0.72765 1.23114 0.94947 1.00767 0.96243 1.22267 0.97674 0.98330 0.84769 1.44875 1.32510 1.51136 1.06723 1.18578 0.97098 1.18225 1.02904 0.93242 1.25686 0.97663 0.98471 1.01826 1.69971 1.18065 1.23668 1.49050 0.85812 0.76204 0.79346 0.79942 1.18139 1.19701 1.23975 1.21763 0.88945 0.92769 0.95812 0.92540 0.89739 0.90500 0.75612 0.83270 0.77454 0.81231 0.87846 0.86243 0.95332 0.93215 0.92809 0.94931 0.96752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.40 71.98 0.60 -2.97 16 2 C 0.17 5.04 0.81 4.79 0.00 5.05 16 3 N -0.70 -18.48 5.14 -421.65 -2.17 -20.65 16 4 C 0.59 18.13 7.00 86.38 0.60 18.74 16 5 O -0.55 -21.00 13.80 -4.45 -0.06 -21.06 16 6 C 0.00 -0.12 7.01 40.14 0.28 0.16 16 7 C -0.09 -2.40 10.60 22.68 0.24 -2.16 16 8 C -0.25 -6.04 7.26 22.86 0.17 -5.88 16 9 S 0.13 2.24 23.31 -56.49 -1.32 0.92 16 10 C -0.17 -2.03 11.13 66.64 0.74 -1.29 16 11 C -0.13 -1.81 10.16 21.49 0.22 -1.59 16 12 C 0.07 1.42 7.67 38.40 0.29 1.72 16 13 N -0.53 -10.69 6.14 -177.13 -1.09 -11.78 16 14 H 0.43 5.84 8.14 -92.71 -0.75 5.09 16 15 C -0.11 -2.97 6.11 32.06 0.20 -2.77 16 16 C 0.09 3.66 4.66 86.93 0.41 4.07 16 17 N -0.63 -30.73 3.24 -691.55 -2.24 -32.97 16 18 C -0.24 -14.43 10.60 84.03 0.89 -13.54 16 19 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 20 C -0.04 -2.57 5.45 84.86 0.46 -2.11 16 21 N -0.96 -62.11 13.97 21.65 0.30 -61.81 16 22 Si 0.96 46.65 24.23 68.60 1.66 48.31 16 23 H -0.26 -11.16 6.39 99.48 0.64 -10.53 16 24 H -0.27 -12.66 6.45 99.48 0.64 -12.02 16 25 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 26 C 0.13 5.66 6.12 86.73 0.53 6.19 16 27 H 0.06 1.68 6.43 -2.39 -0.02 1.67 16 28 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.08 1.82 8.13 -2.39 -0.02 1.80 16 30 H 0.41 7.88 7.56 -92.71 -0.70 7.18 16 31 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 32 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.10 2.54 8.04 -2.39 -0.02 2.52 16 35 H 0.12 2.05 8.05 -2.39 -0.02 2.04 16 36 H 0.03 1.12 5.55 -2.38 -0.01 1.10 16 37 H 0.05 2.09 6.24 -2.39 -0.01 2.07 16 38 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 39 H 0.03 1.43 7.82 -2.39 -0.02 1.41 16 40 H 0.01 0.70 6.49 -2.38 -0.02 0.68 16 Total: -1.00 -80.85 333.90 0.24 -80.61 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.49 Total: 14.81 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.64 Total: 3.61 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -5.19 Total: -127.20 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.06 Total: -21.06 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.66 Total: 48.31 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.32 Total: 0.92 kcal Total: -80.85 0.24 -80.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046746979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.397 kcal (2) G-P(sol) polarization free energy of solvation -80.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds