Wall clock time and date at job start Tue Mar 31 2020 12:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 110.78085 * 2 1 4 4 C 1.34780 * 119.99584 * 298.21116 * 3 2 1 5 5 O 1.21735 * 120.00326 * 0.02562 * 4 3 2 6 6 C 1.46454 * 120.00022 * 180.02562 * 4 3 2 7 7 C 1.37460 * 125.80549 * 179.69321 * 6 4 3 8 8 C 1.40665 * 107.55487 * 179.87589 * 7 6 4 9 9 S 1.76027 * 142.39731 * 180.02562 * 8 7 6 10 10 C 1.75597 * 91.30866 * 180.34276 * 9 8 7 11 11 C 1.32769 * 110.47530 * 0.02562 * 10 9 8 12 12 C 1.38248 * 108.03121 * 0.38635 * 8 7 6 13 13 N 1.37919 * 125.80365 * 359.97438 * 6 4 3 14 14 H 0.96997 * 125.68733 * 359.95674 * 13 6 4 15 15 C 1.55411 * 110.85132 * 123.29518 * 2 1 3 16 16 C 1.54907 * 101.66291 * 153.70342 * 15 2 1 17 17 N 1.47420 * 104.83467 * 323.07233 * 16 15 2 18 18 C 1.36935 * 125.65191 * 204.09132 * 17 16 15 19 19 H 1.07998 * 120.00239 * 169.98119 * 18 17 16 20 20 C 1.38810 * 119.99952 * 349.99110 * 18 17 16 21 21 N 1.31625 * 120.00077 * 350.41594 * 20 18 17 22 22 Si 1.86803 * 120.00274 * 170.41859 * 20 18 17 23 23 H 1.48495 * 109.47346 * 94.13589 * 22 20 18 24 24 H 1.48496 * 109.47417 * 214.13970 * 22 20 18 25 25 H 1.48498 * 109.46994 * 334.13857 * 22 20 18 26 26 C 1.47028 * 108.70124 * 24.13395 * 17 16 15 27 27 H 1.08996 * 109.47164 * 181.78611 * 1 2 3 28 28 H 1.08996 * 109.47567 * 301.79053 * 1 2 3 29 29 H 1.09004 * 109.46996 * 61.79004 * 1 2 3 30 30 H 0.96997 * 120.00496 * 118.20585 * 3 2 1 31 31 H 1.08000 * 126.22762 * 0.02562 * 7 6 4 32 32 H 1.07995 * 124.75558 * 179.97438 * 10 9 8 33 33 H 1.07998 * 122.16043 * 179.97438 * 11 10 9 34 34 H 1.08993 * 110.89037 * 35.63327 * 15 2 1 35 35 H 1.09003 * 111.06706 * 271.84979 * 15 2 1 36 36 H 1.09000 * 110.36383 * 204.23662 * 16 15 2 37 37 H 1.09003 * 110.37097 * 81.91698 * 16 15 2 38 38 H 0.96996 * 119.99640 * 180.02562 * 21 20 18 39 39 H 1.09004 * 109.88146 * 118.35785 * 26 17 16 40 40 H 1.09002 * 109.87992 * 239.36953 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0497 1.3697 0.0000 4 6 1.7729 2.1954 -1.0286 5 8 1.0906 1.8033 -1.9574 6 6 2.2929 3.5645 -1.0290 7 6 2.0904 4.5014 -2.0143 8 6 2.7552 5.6780 -1.6240 9 16 3.0874 7.3283 -2.1386 10 6 4.0332 7.6322 -0.6906 11 6 4.0644 6.5509 0.0792 12 6 3.3644 5.4413 -0.4057 13 7 3.0736 4.1314 -0.0434 14 1 3.3702 3.6895 0.7676 15 6 2.0831 -0.7973 1.2139 16 6 3.4656 -1.2539 0.6849 17 7 3.2438 -1.5535 -0.7414 18 6 4.0006 -2.4006 -1.5061 19 1 3.6663 -2.6802 -2.4942 20 6 5.1974 -2.9002 -1.0111 21 7 5.6994 -2.4189 0.1065 22 14 6.0956 -4.2553 -1.9310 23 1 7.1090 -3.6531 -2.8340 24 1 6.7700 -5.1514 -0.9577 25 1 5.1217 -5.0389 -2.7327 26 6 2.0760 -0.7912 -1.2071 27 1 -0.3633 -1.0271 0.0320 28 1 -0.3634 0.5414 0.8734 29 1 -0.3633 0.4858 -0.9056 30 1 2.5930 1.6823 0.7402 31 1 1.5221 4.3607 -2.9218 32 1 4.5217 8.5672 -0.4593 33 1 4.5958 6.5296 1.0191 34 1 1.4480 -1.6542 1.4381 35 1 2.1919 -0.1549 2.0878 36 1 3.7975 -2.1478 1.2131 37 1 4.1973 -0.4536 0.7952 38 1 6.5359 -2.7678 0.4521 39 1 2.3742 -0.1025 -1.9977 40 1 1.3120 -1.4740 -1.5791 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046746980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:34 Heat of formation + Delta-G solvation = 42.853890 kcal Electronic energy + Delta-G solvation = -24317.475367 eV Core-core repulsion = 20838.481885 eV Total energy + Delta-G solvation = -3478.993481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.43592 -41.00479 -38.84903 -36.24810 -35.81088 -33.77852 -32.08479 -31.72538 -30.45185 -29.10981 -27.58831 -25.57338 -24.60976 -23.67063 -22.34218 -21.65832 -20.93134 -20.58658 -19.67900 -18.88301 -17.52604 -17.17130 -16.74841 -16.45110 -16.39314 -15.74472 -15.66588 -15.29885 -15.01795 -15.00058 -14.55888 -14.29288 -14.07459 -13.83968 -13.61534 -13.32977 -13.16401 -12.94470 -12.82862 -12.74919 -12.53374 -12.19639 -12.06812 -11.97381 -11.77260 -11.76169 -11.70087 -10.99525 -10.77513 -10.71107 -10.19483 -9.11362 -8.88052 -8.65216 -7.92630 -5.25691 -0.24755 0.58111 0.86305 1.15513 1.43432 1.43933 1.54232 1.74949 1.78248 2.06561 2.25240 2.46496 3.26791 3.49164 3.66380 3.77403 3.82482 3.96158 3.99359 4.12029 4.38963 4.53117 4.59017 4.64368 4.71690 4.76505 4.82465 4.88805 4.93272 5.00573 5.06142 5.08100 5.31243 5.39820 5.42175 5.50629 5.55249 5.60373 5.69365 6.17343 6.27858 6.48023 7.04303 7.08417 7.72529 8.38359 9.19000 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.003268 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.426987 B = 8564.680048 C = 9309.151551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.171 3.829 3 N -0.698 5.698 4 C 0.587 3.413 5 O -0.554 6.554 6 C -0.004 4.004 7 C -0.088 4.088 8 C -0.252 4.252 9 S 0.131 5.869 10 C -0.168 4.168 11 C -0.129 4.129 12 C 0.068 3.932 13 N -0.531 5.531 14 H 0.431 0.569 15 C -0.127 4.127 16 C 0.178 3.822 17 N -0.622 5.622 18 C -0.249 4.249 19 H 0.068 0.932 20 C -0.057 4.057 21 N -0.943 5.943 22 Si 0.975 3.025 23 H -0.289 1.289 24 H -0.287 1.287 25 H -0.272 1.272 26 C 0.134 3.866 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.406 0.594 31 H 0.151 0.849 32 H 0.209 0.791 33 H 0.169 0.831 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.039 0.961 37 H 0.002 0.998 38 H 0.249 0.751 39 H 0.007 0.993 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 20.347 5.568 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.084 3.916 3 N -0.349 5.349 4 C 0.375 3.625 5 O -0.432 6.432 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.372 4.372 9 S 0.390 5.610 10 C -0.304 4.304 11 C -0.162 4.162 12 C -0.052 4.052 13 N -0.135 5.135 14 H 0.271 0.729 15 C -0.165 4.165 16 C 0.053 3.947 17 N -0.348 5.348 18 C -0.378 4.378 19 H 0.086 0.914 20 C -0.250 4.250 21 N -0.591 5.591 22 Si 0.803 3.197 23 H -0.216 1.216 24 H -0.213 1.213 25 H -0.197 1.197 26 C 0.008 3.992 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.241 0.759 31 H 0.168 0.832 32 H 0.226 0.774 33 H 0.187 0.813 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.059 0.941 39 H 0.025 0.975 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.015 20.665 3.834 22.158 hybrid contribution 1.599 -1.933 1.067 2.726 sum -5.417 18.732 4.901 20.106 Atomic orbital electron populations 1.21961 0.91600 1.03255 1.03038 1.21276 0.94588 0.80006 0.95697 1.45753 1.53765 1.12378 1.22959 1.17113 0.79809 0.83291 0.82304 1.90819 1.40224 1.76114 1.36054 1.20131 1.04400 0.94000 0.93316 1.20513 1.02316 0.89757 0.99281 1.22941 1.11471 1.01101 1.01651 1.83879 1.52495 1.01639 1.23022 1.25728 1.04333 1.03457 0.96853 1.19212 1.03517 0.89591 1.03833 1.18864 1.03571 0.86987 0.95826 1.41892 1.42185 1.09518 1.19874 0.72863 1.23274 0.97193 1.00044 0.96014 1.21248 0.92437 0.97317 0.83701 1.44768 1.31653 1.50521 1.07884 1.19328 1.00595 1.19136 0.98718 0.91376 1.25565 0.97544 1.02733 0.99206 1.70111 1.20690 1.44805 1.23471 0.85132 0.78242 0.78893 0.77452 1.21574 1.21252 1.19707 1.21700 0.89376 0.92723 0.95441 0.90621 0.90133 0.92460 0.75852 0.83176 0.77396 0.81335 0.89066 0.87726 0.94277 0.98002 0.94138 0.97539 0.95430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.42 71.98 0.61 -3.37 16 2 C 0.17 5.75 0.81 4.88 0.00 5.75 16 3 N -0.70 -21.13 5.15 -421.26 -2.17 -23.29 16 4 C 0.59 19.74 7.00 86.38 0.60 20.34 16 5 O -0.55 -22.29 13.82 -4.46 -0.06 -22.35 16 6 C 0.00 -0.11 7.01 40.14 0.28 0.17 16 7 C -0.09 -2.57 10.60 22.68 0.24 -2.33 16 8 C -0.25 -6.39 7.26 22.87 0.17 -6.23 16 9 S 0.13 2.41 23.31 -56.49 -1.32 1.09 16 10 C -0.17 -2.23 11.13 66.64 0.74 -1.49 16 11 C -0.13 -2.04 10.16 21.49 0.22 -1.82 16 12 C 0.07 1.52 7.67 38.40 0.29 1.82 16 13 N -0.53 -12.09 6.14 -177.14 -1.09 -13.18 16 14 H 0.43 7.28 8.14 -92.71 -0.75 6.53 16 15 C -0.13 -4.11 6.10 32.08 0.20 -3.92 16 16 C 0.18 8.29 5.41 86.86 0.47 8.76 16 17 N -0.62 -32.78 3.39 -692.00 -2.35 -35.13 16 18 C -0.25 -14.52 10.24 84.03 0.86 -13.66 16 19 H 0.07 3.95 7.85 -2.91 -0.02 3.93 16 20 C -0.06 -3.26 5.40 84.86 0.46 -2.80 16 21 N -0.94 -55.82 10.68 21.65 0.23 -55.59 16 22 Si 0.97 46.45 29.56 68.60 2.03 48.48 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 26 C 0.13 6.06 6.12 86.73 0.53 6.59 16 27 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.84 6.45 -2.38 -0.02 1.83 16 30 H 0.41 9.87 7.55 -92.71 -0.70 9.17 16 31 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 32 H 0.21 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 34 H 0.09 2.80 8.04 -2.39 -0.02 2.78 16 35 H 0.10 2.58 8.04 -2.39 -0.02 2.56 16 36 H 0.04 2.06 6.94 -2.39 -0.02 2.04 16 37 H 0.00 0.10 8.07 -2.39 -0.02 0.08 16 38 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.01 0.34 6.47 -2.39 -0.02 0.32 16 40 H 0.03 1.26 7.82 -2.39 -0.02 1.25 16 Total: -1.00 -75.27 340.84 0.59 -74.68 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -0.36 Total: 17.47 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 5.67 Total: 7.83 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.37 Total: -127.19 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.06 Total: -22.35 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.32 Total: 1.09 kcal Total: -75.27 0.59 -74.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046746980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.534 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds