Wall clock time and date at job start Tue Mar 31 2020 11:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.34875 * 125.05587 * 85.67636 * 3 2 1 5 5 C 1.39071 * 113.62052 * 180.22018 * 4 3 2 6 6 C 1.47320 * 122.96115 * 179.82239 * 5 4 3 7 7 O 1.21626 * 120.00059 * 359.72859 * 6 5 4 8 8 N 1.34776 * 119.99993 * 179.73774 * 6 5 4 9 9 C 1.46499 * 119.99990 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46940 * 179.97438 * 9 8 6 11 11 C 1.53041 * 109.46197 * 295.02583 * 10 9 8 12 12 C 1.53194 * 109.31485 * 178.60168 * 11 10 9 13 13 N 1.46927 * 108.76444 * 54.65626 * 12 11 10 14 14 C 1.36936 * 120.63029 * 126.40539 * 13 12 11 15 15 H 1.08003 * 119.99837 * 331.82726 * 14 13 12 16 16 C 1.38809 * 119.99929 * 151.83135 * 14 13 12 17 17 N 1.31623 * 119.99954 * 343.06673 * 16 14 13 18 18 Si 1.86795 * 120.00102 * 163.07049 * 16 14 13 19 19 H 1.48499 * 109.47278 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47332 * 119.99539 * 18 16 14 21 21 H 1.48499 * 109.47279 * 239.99786 * 18 16 14 22 22 C 1.46933 * 118.73803 * 306.38835 * 13 12 11 23 23 C 1.53039 * 109.45639 * 174.97302 * 10 9 8 24 24 C 1.36566 * 114.07650 * 359.55062 * 5 4 3 25 25 S 1.70598 * 110.54925 * 0.24782 * 24 5 4 26 26 H 1.07995 * 123.18744 * 0.04535 * 4 3 2 27 27 H 0.97000 * 120.00043 * 359.97438 * 8 6 5 28 28 H 1.09001 * 109.46956 * 60.00086 * 9 8 6 29 29 H 1.08994 * 109.47395 * 299.99694 * 9 8 6 30 30 H 1.08997 * 109.46286 * 55.00020 * 10 9 8 31 31 H 1.08997 * 109.50145 * 298.57108 * 11 10 9 32 32 H 1.09005 * 109.49287 * 58.66175 * 11 10 9 33 33 H 1.09002 * 109.59604 * 294.87330 * 12 11 10 34 34 H 1.08999 * 109.70397 * 174.50642 * 12 11 10 35 35 H 0.97000 * 119.99986 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.58516 * 293.81668 * 22 13 12 37 37 H 1.08994 * 109.70086 * 173.46451 * 22 13 12 38 38 H 1.08998 * 109.49955 * 301.33564 * 23 10 9 39 39 H 1.09003 * 109.49877 * 61.40734 * 23 10 9 40 40 H 1.07991 * 124.72472 * 180.26411 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3428 -0.0822 -1.1009 5 6 4.7059 -0.0657 -0.8256 6 6 5.7366 -0.1494 -1.8749 7 8 5.4095 -0.2425 -3.0426 8 7 7.0420 -0.1228 -1.5408 9 6 8.0670 -0.2065 -2.5842 10 6 9.4544 -0.1546 -1.9414 11 6 9.6593 1.2103 -1.2802 12 6 11.0354 1.2462 -0.6079 13 7 12.0576 0.8993 -1.6046 14 6 13.1290 1.7241 -1.8214 15 1 13.0379 2.7855 -1.6439 16 6 14.3320 1.1959 -2.2692 17 7 14.5604 -0.0966 -2.1711 18 14 15.6268 2.3195 -3.0109 19 1 15.1289 3.7185 -3.0075 20 1 16.8736 2.2355 -2.2086 21 1 15.9072 1.8979 -4.4069 22 6 11.9086 -0.3497 -2.3642 23 6 10.5226 -0.3678 -3.0165 24 6 5.0047 0.0407 0.5027 25 16 3.5770 0.1154 1.4336 26 1 2.9425 -0.1573 -2.1012 27 1 7.3029 -0.0483 -0.6096 28 1 7.9541 0.6312 -3.2724 29 1 7.9540 -1.1431 -3.1302 30 1 9.5354 -0.9386 -1.1886 31 1 9.6032 1.9931 -2.0366 32 1 8.8842 1.3716 -0.5310 33 1 11.0620 0.5250 0.2090 34 1 11.2285 2.2460 -0.2192 35 1 15.4013 -0.4656 -2.4837 36 1 12.0065 -1.2009 -1.6905 37 1 12.6764 -0.4043 -3.1358 38 1 10.3621 -1.3298 -3.5032 39 1 10.4580 0.4298 -3.7567 40 1 6.0054 0.0734 0.9074 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117795577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:57 Heat of formation + Delta-G solvation = 18.819025 kcal Electronic energy + Delta-G solvation = -23140.371761 eV Core-core repulsion = 19660.336050 eV Total energy + Delta-G solvation = -3480.035711 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.14905 -39.47717 -38.59978 -37.33980 -36.37826 -34.50280 -32.63322 -31.54077 -31.11963 -28.43452 -26.60854 -25.78478 -24.02737 -23.49986 -22.40215 -21.02273 -20.41754 -20.10845 -18.67291 -18.08897 -17.45361 -16.79976 -16.47212 -16.39004 -15.70415 -15.44523 -15.28033 -15.24742 -14.96245 -14.89087 -14.67806 -14.18037 -14.00941 -13.79702 -13.68462 -13.59098 -13.52743 -13.26228 -12.97721 -12.76804 -12.56651 -12.22436 -12.20243 -11.96598 -11.79526 -11.56838 -11.24397 -11.06075 -10.94468 -10.51223 -10.15451 -10.00167 -9.58270 -8.62966 -7.84923 -5.29179 -0.68842 0.08875 0.57616 0.67997 1.46306 1.49337 1.58678 1.71765 2.03976 2.19188 2.40172 2.53085 2.82472 3.29749 3.75942 3.86147 3.91291 3.98073 4.03411 4.13948 4.14451 4.57478 4.59420 4.60162 4.75871 4.78962 4.83625 4.89293 4.99041 5.02660 5.08146 5.19620 5.34485 5.35586 5.42748 5.50118 5.60431 5.70110 5.84247 6.29110 6.43160 6.57986 7.19091 7.23987 7.92384 8.41893 9.21030 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.034978 B = 0.002193 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.303915 B =12766.194872 C =13145.857868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.303 3.697 3 C -0.198 4.198 4 C -0.016 4.016 5 C -0.179 4.179 6 C 0.574 3.426 7 O -0.584 6.584 8 N -0.706 5.706 9 C 0.136 3.864 10 C -0.078 4.078 11 C -0.115 4.115 12 C 0.139 3.861 13 N -0.613 5.613 14 C -0.257 4.257 15 H 0.065 0.935 16 C -0.053 4.053 17 N -0.934 5.934 18 Si 0.962 3.038 19 H -0.267 1.267 20 H -0.293 1.293 21 H -0.292 1.292 22 C 0.177 3.823 23 C -0.123 4.123 24 C -0.178 4.178 25 S 0.373 5.627 26 H 0.151 0.849 27 H 0.415 0.585 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.021 0.979 34 H 0.051 0.949 35 H 0.249 0.751 36 H 0.000 1.000 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.445 -0.696 9.649 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.012 4.012 3 C -0.318 4.318 4 C -0.051 4.051 5 C -0.195 4.195 6 C 0.361 3.639 7 O -0.466 6.466 8 N -0.357 5.357 9 C 0.012 3.988 10 C -0.096 4.096 11 C -0.154 4.154 12 C 0.014 3.986 13 N -0.337 5.337 14 C -0.388 4.388 15 H 0.082 0.918 16 C -0.248 4.248 17 N -0.581 5.581 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.220 1.220 21 H -0.219 1.219 22 C 0.051 3.949 23 C -0.163 4.163 24 C -0.318 4.318 25 S 0.641 5.359 26 H 0.168 0.832 27 H 0.253 0.747 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.018 0.982 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -22.562 -0.692 10.384 24.846 hybrid contribution 2.084 0.200 -1.988 2.887 sum -20.478 -0.492 8.395 22.138 Atomic orbital electron populations 1.81338 1.12444 1.11062 1.07809 1.24437 0.91110 0.92378 0.93281 1.19944 0.88842 1.22186 1.00825 1.20253 0.91241 0.94108 0.99501 1.18713 0.93227 1.14179 0.93425 1.17921 0.82676 0.75654 0.87664 1.90800 1.82379 1.52068 1.21311 1.45731 1.04662 1.73710 1.11637 1.21295 0.85821 1.01611 0.90040 1.21149 0.92073 0.98606 0.97818 1.21947 0.97241 0.96169 1.00000 1.21102 0.88748 0.98153 0.90641 1.44346 1.24069 1.23301 1.41937 1.19524 0.89563 0.89968 1.39740 0.91764 1.25748 0.98872 0.97153 1.03012 1.70175 1.24624 1.12584 1.50703 0.85291 0.79036 0.79064 0.77575 1.19175 1.21998 1.21933 1.20562 0.93909 0.86497 0.93944 1.21982 0.95704 1.00897 0.97723 1.26695 1.07845 1.00683 0.96602 1.83141 0.89439 1.61506 1.01796 0.83160 0.74729 0.92445 0.91787 0.90050 0.93279 0.89121 0.96090 0.93082 0.94231 0.98215 0.93351 0.91359 0.93295 0.76794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.87 18.54 19.01 0.35 -9.52 16 2 C 0.30 5.10 15.79 88.33 1.39 6.50 16 3 C -0.20 -2.36 6.24 22.75 0.14 -2.22 16 4 C -0.02 -0.24 9.71 21.70 0.21 -0.02 16 5 C -0.18 -2.46 5.82 -21.08 -0.12 -2.58 16 6 C 0.57 11.96 7.79 86.63 0.67 12.64 16 7 O -0.58 -17.64 16.69 -4.11 -0.07 -17.71 16 8 N -0.71 -12.23 5.24 -466.47 -2.44 -14.67 16 9 C 0.14 3.11 5.06 86.38 0.44 3.55 16 10 C -0.08 -2.00 2.19 -10.77 -0.02 -2.03 16 11 C -0.11 -3.05 5.25 30.67 0.16 -2.89 16 12 C 0.14 5.03 6.52 86.36 0.56 5.60 16 13 N -0.61 -29.06 2.99 -699.08 -2.09 -31.16 16 14 C -0.26 -13.76 9.58 84.03 0.81 -12.96 16 15 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 16 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 17 N -0.93 -54.33 11.19 21.65 0.24 -54.09 16 18 Si 0.96 44.29 29.59 68.60 2.03 46.32 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 C 0.18 8.05 5.30 86.36 0.46 8.51 16 23 C -0.12 -4.19 5.36 30.67 0.16 -4.03 16 24 C -0.18 -1.03 10.41 67.43 0.70 -0.33 16 25 S 0.37 1.75 23.03 -56.49 -1.30 0.45 16 26 H 0.15 2.50 7.99 -2.91 -0.02 2.48 16 27 H 0.41 4.36 6.11 -92.71 -0.57 3.79 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.64 7.15 -2.38 -0.02 1.62 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 35 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 36 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.05 2.57 6.07 -2.39 -0.01 2.56 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.22 -0.17 6.98 -2.92 -0.02 -0.19 16 Total: -1.00 -73.37 352.07 3.21 -70.16 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 0.51 Total: 2.96 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 5.98 Total: 7.26 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -3.94 Total: -109.44 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.07 Total: -17.71 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.30 Total: 0.45 kcal Total: -73.37 3.21 -70.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117795577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.976 kcal (2) G-P(sol) polarization free energy of solvation -73.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds