Wall clock time and date at job start Tue Mar 31 2020 12:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33414 * 119.99714 * 2 1 4 4 C 1.46337 * 119.99778 * 179.72444 * 3 2 1 5 5 C 1.35184 * 119.99604 * 179.97438 * 4 3 2 6 6 C 1.46262 * 119.99917 * 179.97438 * 5 4 3 7 7 O 1.21718 * 119.99812 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00154 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99966 * 0.02562 * 8 6 5 10 10 C 1.50700 * 109.46912 * 89.99897 * 9 8 6 11 11 H 1.07996 * 119.99893 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99705 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00006 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 120.00196 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47046 * 90.00119 * 14 12 10 16 16 H 1.48505 * 109.46762 * 210.00351 * 14 12 10 17 17 H 1.48500 * 109.46640 * 329.99764 * 14 12 10 18 18 C 1.46499 * 119.99899 * 180.02562 * 8 6 5 19 19 C 1.50697 * 109.47293 * 90.00294 * 18 8 6 20 20 C 1.38250 * 119.98186 * 269.72165 * 19 18 8 21 21 C 1.38211 * 120.00968 * 179.72543 * 20 19 18 22 22 C 1.38357 * 119.98724 * 0.55060 * 21 20 19 23 23 Cl 1.73601 * 120.01312 * 179.70414 * 22 21 20 24 24 C 1.38349 * 119.97254 * 359.72323 * 22 21 20 25 25 C 1.38216 * 119.98904 * 0.02562 * 24 22 21 26 26 H 1.09001 * 109.47048 * 60.00619 * 1 2 3 27 27 H 1.09006 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47683 * 300.00410 * 1 2 3 29 29 H 1.07991 * 120.00449 * 179.71939 * 2 1 3 30 30 H 1.08000 * 119.99506 * 359.71947 * 3 2 1 31 31 H 1.07991 * 120.00445 * 359.97438 * 4 3 2 32 32 H 1.07991 * 119.99956 * 0.02562 * 5 4 3 33 33 H 1.08998 * 109.47416 * 209.99872 * 9 8 6 34 34 H 1.09001 * 109.46709 * 330.00324 * 9 8 6 35 35 H 0.97000 * 119.99920 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.46865 * 210.00031 * 18 8 6 37 37 H 1.08998 * 109.47058 * 329.99544 * 18 8 6 38 38 H 1.07997 * 119.99602 * 0.02562 * 20 19 18 39 39 H 1.08000 * 120.01232 * 180.27119 * 21 20 19 40 40 H 1.08007 * 120.00689 * 179.97438 * 24 22 21 41 41 H 1.07997 * 119.99354 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1740 1.1554 0.0000 4 6 3.6373 1.1555 0.0061 5 6 4.3132 2.3262 0.0056 6 6 5.7758 2.3263 0.0122 7 8 6.3844 1.2723 0.0178 8 7 6.4496 3.4936 0.0122 9 6 5.7171 4.7622 0.0061 10 6 5.4600 5.2006 1.4248 11 1 5.8071 4.5946 2.2486 12 6 4.7806 6.3748 1.6711 13 7 4.5567 6.7577 2.9092 14 14 4.1783 7.4220 0.2462 15 1 2.8066 6.9988 -0.1339 16 1 4.1608 8.8498 0.6541 17 1 5.0890 7.2498 -0.9141 18 6 7.9146 3.4936 0.0183 19 6 8.4229 3.4903 -1.4003 20 6 8.6614 2.2913 -2.0459 21 6 9.1221 2.2875 -3.3490 22 6 9.3555 3.4840 -4.0034 23 17 9.9416 3.4800 -5.6375 24 6 9.1220 4.6835 -3.3548 25 6 8.6563 4.6860 -2.0535 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.0470 -0.9352 0.0046 30 1 1.6339 2.0907 -0.0046 31 1 4.1774 0.2203 0.0110 32 1 3.7731 3.2614 0.0011 33 1 6.3082 5.5207 -0.5070 34 1 4.7668 4.6305 -0.5113 35 1 4.0791 7.5840 3.0825 36 1 8.2757 4.3848 0.5315 37 1 8.2758 2.6049 0.5359 38 1 8.4830 1.3574 -1.5337 39 1 9.3043 1.3508 -3.8548 40 1 9.3044 5.6178 -3.8650 41 1 8.4744 5.6224 -1.5470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143997403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:31 Heat of formation + Delta-G solvation = 8.626665 kcal Electronic energy + Delta-G solvation = -23472.329329 eV Core-core repulsion = 19957.515186 eV Total energy + Delta-G solvation = -3514.814143 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.76177 -38.72217 -36.54822 -35.68545 -35.12802 -32.82473 -32.12264 -31.16432 -30.98962 -28.08912 -27.44818 -25.61788 -23.00670 -22.57287 -22.01412 -20.78962 -19.48415 -18.03873 -17.24554 -16.92558 -16.60876 -15.74020 -15.32539 -15.27042 -14.54379 -14.36160 -14.11037 -13.73186 -13.45390 -13.39412 -13.35140 -13.13423 -12.97845 -12.53206 -12.24137 -11.95886 -11.73979 -11.65888 -11.46099 -11.44639 -11.22593 -11.10170 -10.90485 -10.77703 -10.64587 -10.53305 -10.33868 -9.69058 -9.33292 -8.96367 -8.77533 -8.52911 -8.14946 -7.79111 -6.26004 -4.28056 1.10372 1.17809 1.37601 2.10934 2.86949 3.12930 3.21073 3.23001 3.53187 3.93918 4.08226 4.21651 4.82685 4.89562 4.93418 5.03709 5.06895 5.08935 5.31616 5.34629 5.46217 5.50735 5.55950 5.63558 5.74427 5.77745 5.88153 5.92895 6.07300 6.14727 6.26535 6.30761 6.33864 6.36968 6.60581 6.64590 6.69361 6.81014 6.88666 6.99823 7.24550 7.38158 8.03463 8.34502 8.77539 8.85547 9.32705 10.86593 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.008254 B = 0.004233 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.378794 B = 6612.374244 C = 8781.445996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.146 4.146 3 C -0.133 4.133 4 C -0.066 4.066 5 C -0.175 4.175 6 C 0.550 3.450 7 O -0.572 6.572 8 N -0.579 5.579 9 C 0.208 3.792 10 C -0.541 4.541 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.889 5.889 14 Si 0.868 3.132 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.263 1.263 18 C 0.155 3.845 19 C -0.089 4.089 20 C -0.085 4.085 21 C -0.117 4.117 22 C -0.037 4.037 23 Cl -0.083 7.083 24 C -0.116 4.116 25 C -0.092 4.092 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.267 0.733 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 -7.456 -11.414 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.086 4.086 5 C -0.196 4.196 6 C 0.341 3.659 7 O -0.455 6.455 8 N -0.308 5.308 9 C 0.087 3.913 10 C -0.579 4.579 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.526 5.526 14 Si 0.694 3.306 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.188 1.188 18 C 0.032 3.968 19 C -0.091 4.091 20 C -0.103 4.103 21 C -0.135 4.135 22 C -0.064 4.064 23 Cl -0.054 7.054 24 C -0.135 4.135 25 C -0.111 4.111 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.154 0.846 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.535 -7.790 -11.418 14.053 hybrid contribution -0.396 0.947 -0.740 1.265 sum 2.139 -6.843 -12.158 14.115 Atomic orbital electron populations 1.20859 0.92953 1.02245 1.02201 1.23559 0.96074 0.97772 0.99054 1.21879 0.93198 0.98508 1.01566 1.22377 0.92958 0.98305 0.94911 1.23278 0.93804 0.99509 1.02981 1.18259 0.88279 0.83243 0.76099 1.90685 1.70622 1.31308 1.52859 1.47790 1.05126 1.07327 1.70532 1.19880 0.92027 0.80922 0.98461 1.21375 1.37644 1.07727 0.91194 0.90264 1.24860 0.95220 0.97079 0.95435 1.69889 1.40576 1.23346 1.18811 0.86982 0.80048 0.80433 0.83131 1.19823 1.20806 1.18798 1.20259 0.81040 1.04286 0.91235 1.20568 0.97609 0.92970 0.97919 1.21232 0.96702 0.98832 0.93573 1.21030 1.00764 0.96635 0.95116 1.20918 1.03740 0.95400 0.86302 1.98348 1.87242 1.98992 1.20863 1.21008 1.00689 0.96657 0.95124 1.21165 0.97588 0.98556 0.93768 0.91524 0.92087 0.91367 0.87072 0.86472 0.85847 0.84581 0.94775 0.95043 0.92315 0.88898 0.89409 0.84407 0.85290 0.85180 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 10.19 36.00 0.37 -0.79 16 2 C -0.15 -1.68 9.98 -36.00 -0.36 -2.04 16 3 C -0.13 -1.82 9.48 -38.01 -0.36 -2.19 16 4 C -0.07 -1.05 9.38 -37.41 -0.35 -1.40 16 5 C -0.18 -3.24 8.91 -37.45 -0.33 -3.57 16 6 C 0.55 11.08 7.60 -13.04 -0.10 10.99 16 7 O -0.57 -12.06 15.36 5.17 0.08 -11.98 16 8 N -0.58 -11.44 2.44 -178.14 -0.43 -11.88 16 9 C 0.21 4.44 3.94 -5.19 -0.02 4.41 16 10 C -0.54 -13.81 9.94 -34.44 -0.34 -14.15 16 11 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 12 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.89 -25.29 13.96 55.43 0.77 -24.52 16 14 Si 0.87 19.25 27.47 -169.99 -4.67 14.58 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 18 C 0.15 2.66 5.53 -5.20 -0.03 2.63 16 19 C -0.09 -1.37 5.46 -104.62 -0.57 -1.94 16 20 C -0.08 -1.24 9.70 -39.59 -0.38 -1.62 16 21 C -0.12 -1.54 9.83 -39.55 -0.39 -1.93 16 22 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 23 Cl -0.08 -0.98 28.96 -51.86 -1.50 -2.48 16 24 C -0.12 -1.51 9.83 -39.55 -0.39 -1.90 16 25 C -0.09 -1.31 9.70 -39.59 -0.38 -1.69 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.11 1.18 8.05 -52.49 -0.42 0.75 16 30 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.12 1.97 7.52 -52.49 -0.39 1.57 16 32 H 0.14 2.55 6.20 -52.49 -0.33 2.23 16 33 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 34 H 0.03 0.66 5.52 -51.93 -0.29 0.37 16 35 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.09 1.55 8.01 -51.93 -0.42 1.13 16 37 H 0.09 1.50 7.36 -51.93 -0.38 1.12 16 38 H 0.14 2.07 7.60 -52.49 -0.40 1.67 16 39 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 41 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -28.77 370.62 -9.71 -38.47 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.55 Total: 6.20 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -3.99 Total: -13.99 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.34 Total: -36.39 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.67 Total: 14.58 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.77 -9.71 -38.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143997403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.100 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds