Wall clock time and date at job start Tue Mar 31 2020 12:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33414 * 119.99714 * 2 1 4 4 C 1.46337 * 119.99778 * 179.72444 * 3 2 1 5 5 C 1.35184 * 119.99604 * 179.97438 * 4 3 2 6 6 C 1.46262 * 119.99917 * 179.97438 * 5 4 3 7 7 O 1.21718 * 119.99812 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00154 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99966 * 0.02562 * 8 6 5 10 10 C 1.50700 * 109.46912 * 89.99897 * 9 8 6 11 11 H 1.07996 * 119.99893 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99705 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00006 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 120.00196 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47046 * 90.00119 * 14 12 10 16 16 H 1.48505 * 109.46762 * 210.00351 * 14 12 10 17 17 H 1.48500 * 109.46640 * 329.99764 * 14 12 10 18 18 C 1.46499 * 119.99899 * 180.02562 * 8 6 5 19 19 C 1.50697 * 109.47293 * 90.00294 * 18 8 6 20 20 C 1.38250 * 119.98186 * 269.72165 * 19 18 8 21 21 C 1.38211 * 120.00968 * 179.72543 * 20 19 18 22 22 C 1.38357 * 119.98724 * 0.55060 * 21 20 19 23 23 Cl 1.73601 * 120.01312 * 179.70414 * 22 21 20 24 24 C 1.38349 * 119.97254 * 359.72323 * 22 21 20 25 25 C 1.38216 * 119.98904 * 0.02562 * 24 22 21 26 26 H 1.09001 * 109.47048 * 60.00619 * 1 2 3 27 27 H 1.09006 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47683 * 300.00410 * 1 2 3 29 29 H 1.07991 * 120.00449 * 179.71939 * 2 1 3 30 30 H 1.08000 * 119.99506 * 359.71947 * 3 2 1 31 31 H 1.07991 * 120.00445 * 359.97438 * 4 3 2 32 32 H 1.07991 * 119.99956 * 0.02562 * 5 4 3 33 33 H 1.08998 * 109.47416 * 209.99872 * 9 8 6 34 34 H 1.09001 * 109.46709 * 330.00324 * 9 8 6 35 35 H 0.97000 * 119.99920 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.46865 * 210.00031 * 18 8 6 37 37 H 1.08998 * 109.47058 * 329.99544 * 18 8 6 38 38 H 1.07997 * 119.99602 * 0.02562 * 20 19 18 39 39 H 1.08000 * 120.01232 * 180.27119 * 21 20 19 40 40 H 1.08007 * 120.00689 * 179.97438 * 24 22 21 41 41 H 1.07997 * 119.99354 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1740 1.1554 0.0000 4 6 3.6373 1.1555 0.0061 5 6 4.3132 2.3262 0.0056 6 6 5.7758 2.3263 0.0122 7 8 6.3844 1.2723 0.0178 8 7 6.4496 3.4936 0.0122 9 6 5.7171 4.7622 0.0061 10 6 5.4600 5.2006 1.4248 11 1 5.8071 4.5946 2.2486 12 6 4.7806 6.3748 1.6711 13 7 4.5567 6.7577 2.9092 14 14 4.1783 7.4220 0.2462 15 1 2.8066 6.9988 -0.1339 16 1 4.1608 8.8498 0.6541 17 1 5.0890 7.2498 -0.9141 18 6 7.9146 3.4936 0.0183 19 6 8.4229 3.4903 -1.4003 20 6 8.6614 2.2913 -2.0459 21 6 9.1221 2.2875 -3.3490 22 6 9.3555 3.4840 -4.0034 23 17 9.9416 3.4800 -5.6375 24 6 9.1220 4.6835 -3.3548 25 6 8.6563 4.6860 -2.0535 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.0470 -0.9352 0.0046 30 1 1.6339 2.0907 -0.0046 31 1 4.1774 0.2203 0.0110 32 1 3.7731 3.2614 0.0011 33 1 6.3082 5.5207 -0.5070 34 1 4.7668 4.6305 -0.5113 35 1 4.0791 7.5840 3.0825 36 1 8.2757 4.3848 0.5315 37 1 8.2758 2.6049 0.5359 38 1 8.4830 1.3574 -1.5337 39 1 9.3043 1.3508 -3.8548 40 1 9.3044 5.6178 -3.8650 41 1 8.4744 5.6224 -1.5470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143997403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:31 Heat of formation + Delta-G solvation = -4.274675 kcal Electronic energy + Delta-G solvation = -23472.888773 eV Core-core repulsion = 19957.515186 eV Total energy + Delta-G solvation = -3515.373587 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11762 -39.97770 -37.58298 -36.89142 -36.57282 -34.64918 -33.42358 -32.40408 -32.05630 -29.84045 -28.56985 -26.85759 -24.64820 -23.74531 -23.29891 -21.97664 -20.58243 -19.53060 -19.09505 -18.23055 -17.96960 -17.20371 -16.59880 -16.41420 -16.14967 -15.64339 -15.45511 -15.05566 -14.57481 -14.51785 -14.45078 -14.32027 -14.11804 -14.09219 -13.79410 -13.28050 -13.08080 -12.85165 -12.70360 -12.57973 -12.43089 -12.37002 -12.22278 -12.13352 -12.00169 -11.77737 -11.71126 -11.68255 -10.90371 -10.74564 -10.02596 -9.67225 -9.54359 -9.14172 -8.29032 -6.36410 -0.12861 0.06717 0.30926 1.10262 1.39999 1.41492 1.50878 1.65160 2.22172 2.34459 2.53960 2.79032 3.04974 3.65314 3.80246 3.83034 3.93876 4.03920 4.12971 4.31956 4.33212 4.36413 4.54794 4.59179 4.65623 4.71060 4.75578 4.79592 4.84715 4.88227 4.99678 5.05496 5.21199 5.21390 5.24339 5.43766 5.45098 5.59224 5.67595 5.71353 5.79436 5.85395 6.18445 6.58426 6.70256 7.23630 7.33797 8.87411 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.008254 B = 0.004233 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.378794 B = 6612.374244 C = 8781.445996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.106 4.106 3 C -0.174 4.174 4 C -0.030 4.030 5 C -0.223 4.223 6 C 0.544 3.456 7 O -0.591 6.591 8 N -0.585 5.585 9 C 0.219 3.781 10 C -0.538 4.538 11 H 0.029 0.971 12 C 0.022 3.978 13 N -0.942 5.942 14 Si 0.936 3.064 15 H -0.263 1.263 16 H -0.284 1.284 17 H -0.236 1.236 18 C 0.154 3.846 19 C -0.101 4.101 20 C -0.093 4.093 21 C -0.114 4.114 22 C -0.039 4.039 23 Cl -0.067 7.067 24 C -0.112 4.112 25 C -0.097 4.097 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.268 0.732 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 -7.863 -14.269 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.124 4.124 3 C -0.192 4.192 4 C -0.050 4.050 5 C -0.244 4.244 6 C 0.337 3.663 7 O -0.476 6.476 8 N -0.313 5.313 9 C 0.097 3.903 10 C -0.577 4.577 11 H 0.048 0.952 12 C -0.177 4.177 13 N -0.581 5.581 14 Si 0.758 3.242 15 H -0.188 1.188 16 H -0.210 1.210 17 H -0.159 1.159 18 C 0.032 3.968 19 C -0.102 4.102 20 C -0.112 4.112 21 C -0.133 4.133 22 C -0.066 4.066 23 Cl -0.038 7.038 24 C -0.130 4.130 25 C -0.116 4.116 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.145 0.855 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.527 -8.215 -14.292 16.555 hybrid contribution -0.150 0.834 0.192 0.869 sum 1.376 -7.381 -14.100 15.974 Atomic orbital electron populations 1.20985 0.90915 1.03921 1.02869 1.23998 0.97634 0.97363 0.93388 1.21840 0.91849 0.99698 1.05823 1.22582 0.94331 0.97365 0.90674 1.23095 0.92887 1.00113 1.08277 1.18584 0.89074 0.83072 0.75587 1.90650 1.71154 1.31657 1.54150 1.47815 1.06091 1.06759 1.70642 1.19666 0.92989 0.81866 0.95735 1.21491 1.36984 1.07076 0.92113 0.95247 1.25741 0.95276 0.98469 0.98207 1.70053 1.42253 1.24238 1.21593 0.85889 0.80253 0.77885 0.80142 1.18826 1.21022 1.15947 1.20288 0.79857 1.03740 0.92916 1.20382 0.98943 0.93984 0.96895 1.21168 0.97475 0.98182 0.94345 1.21189 0.99957 0.97713 0.94444 1.21040 1.03181 0.95342 0.87052 1.98356 1.86964 1.98967 1.19545 1.21235 0.99611 0.97645 0.94556 1.21249 0.97769 0.98196 0.94381 0.90430 0.89997 0.90911 0.85768 0.86358 0.85809 0.85404 0.93328 0.93928 0.92272 0.89081 0.90288 0.85458 0.83496 0.82956 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 10.19 71.23 0.73 -1.22 16 2 C -0.11 -2.12 9.98 24.59 0.25 -1.88 16 3 C -0.17 -4.55 9.48 23.29 0.22 -4.33 16 4 C -0.03 -0.95 9.38 23.67 0.22 -0.73 16 5 C -0.22 -8.50 8.91 23.65 0.21 -8.29 16 6 C 0.54 22.76 7.60 86.33 0.66 23.41 16 7 O -0.59 -25.84 15.36 -4.41 -0.07 -25.91 16 8 N -0.59 -23.87 2.44 -835.73 -2.04 -25.91 16 9 C 0.22 9.42 3.94 85.63 0.34 9.75 16 10 C -0.54 -28.52 9.94 25.60 0.25 -28.26 16 11 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 12 C 0.02 1.18 5.47 84.65 0.46 1.64 16 13 N -0.94 -55.52 13.96 21.45 0.30 -55.22 16 14 Si 0.94 39.31 27.47 68.60 1.88 41.19 16 15 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.24 -8.84 6.54 99.48 0.65 -8.19 16 18 C 0.15 5.51 5.53 85.63 0.47 5.98 16 19 C -0.10 -3.10 5.46 -19.86 -0.11 -3.21 16 20 C -0.09 -2.71 9.70 22.27 0.22 -2.50 16 21 C -0.11 -2.87 9.83 22.29 0.22 -2.65 16 22 C -0.04 -0.95 6.32 22.32 0.14 -0.81 16 23 Cl -0.07 -1.41 28.96 -2.72 -0.08 -1.49 16 24 C -0.11 -2.67 9.83 22.29 0.22 -2.45 16 25 C -0.10 -2.64 9.70 22.26 0.22 -2.43 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.12 2.20 8.05 -2.92 -0.02 2.18 16 30 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.12 3.91 7.52 -2.92 -0.02 3.89 16 32 H 0.13 4.98 6.20 -2.92 -0.02 4.96 16 33 H 0.05 1.96 7.13 -2.39 -0.02 1.94 16 34 H 0.04 1.77 5.52 -2.39 -0.01 1.75 16 35 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.09 3.18 8.01 -2.39 -0.02 3.16 16 37 H 0.08 2.89 7.36 -2.39 -0.02 2.87 16 38 H 0.13 3.95 7.60 -2.91 -0.02 3.92 16 39 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 40 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -64.35 370.62 5.68 -58.67 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.97 Total: 26.60 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.71 Total: -17.94 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.74 Total: -81.12 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.07 Total: -25.91 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.88 Total: 41.19 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -64.35 5.68 -58.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143997403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.395 kcal (2) G-P(sol) polarization free energy of solvation -64.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds