Wall clock time and date at job start Tue Mar 31 2020 12:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46857 * 2 1 4 4 C 1.52998 * 109.46891 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47191 * 180.02562 * 4 3 2 6 6 C 1.36902 * 119.99704 * 263.44312 * 5 4 3 7 7 H 1.08004 * 119.99797 * 133.44658 * 6 5 4 8 8 C 1.39011 * 120.00207 * 313.45327 * 6 5 4 9 9 N 1.31381 * 119.99849 * 344.40996 * 8 6 5 10 10 Si 1.86806 * 119.99952 * 164.41873 * 8 6 5 11 11 H 1.48499 * 109.47095 * 89.99838 * 10 8 6 12 12 H 1.48493 * 109.46833 * 209.99447 * 10 8 6 13 13 H 1.48493 * 109.46981 * 329.99468 * 10 8 6 14 14 C 1.34775 * 120.00290 * 83.44481 * 5 4 3 15 15 O 1.21640 * 119.99700 * 0.19261 * 14 5 4 16 16 C 1.47346 * 119.99848 * 179.97438 * 14 5 4 17 17 C 1.40219 * 119.95909 * 326.27457 * 16 14 5 18 18 C 1.36175 * 120.48839 * 180.02562 * 17 16 14 19 19 C 1.40087 * 120.09379 * 359.97438 * 18 17 16 20 20 N 1.35471 * 133.19154 * 179.97438 * 19 18 17 21 21 C 1.31241 * 109.73009 * 180.02562 * 20 19 18 22 22 S 1.76194 * 125.06334 * 179.97438 * 21 20 19 23 23 N 1.36529 * 109.87061 * 0.02562 * 21 20 19 24 24 H 0.97008 * 126.42040 * 180.02562 * 23 21 20 25 25 C 1.38655 * 107.16029 * 359.97438 * 23 21 20 26 26 C 1.38138 * 133.83178 * 180.31316 * 25 23 21 27 27 H 1.09009 * 109.46862 * 299.99624 * 1 2 3 28 28 H 1.08996 * 109.47609 * 59.99798 * 1 2 3 29 29 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46658 * 240.00186 * 2 1 3 31 31 H 1.09002 * 109.47200 * 120.00297 * 2 1 3 32 32 H 1.09000 * 109.46861 * 60.00626 * 3 2 1 33 33 H 1.08996 * 109.47176 * 300.00467 * 3 2 1 34 34 H 1.08994 * 109.47312 * 59.99849 * 4 3 2 35 35 H 1.09002 * 109.46992 * 300.00190 * 4 3 2 36 36 H 0.97007 * 120.00053 * 180.02562 * 9 8 6 37 37 H 1.08004 * 119.75498 * 0.02912 * 17 16 14 38 38 H 1.07995 * 119.95655 * 180.02562 * 18 17 16 39 39 H 1.40997 * 100.00091 * 90.02509 * 22 21 20 40 40 H 1.08000 * 120.19950 * 359.92988 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.4136 3.4246 -1.1777 7 1 4.0689 4.4238 -1.3996 8 6 5.2180 2.7487 -2.0879 9 7 5.8849 1.6819 -1.7095 10 14 5.3507 3.3573 -3.8491 11 1 6.4718 4.3253 -3.9551 12 1 5.6034 2.2065 -4.7527 13 1 4.0825 4.0240 -4.2392 14 6 4.1578 3.5029 1.1599 15 8 3.8455 2.9677 2.2066 16 6 4.6495 4.8919 1.1604 17 6 5.6234 5.2903 0.2336 18 6 6.0859 6.5711 0.2249 19 6 5.5895 7.5034 1.1451 20 7 5.8518 8.8131 1.3712 21 6 5.1130 9.2478 2.3650 22 16 5.1315 10.8928 2.9959 23 7 4.3289 8.2351 2.8379 24 1 3.6927 8.2922 3.5680 25 6 4.6115 7.1101 2.0783 26 6 4.1409 5.8113 2.0805 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9289 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 6.4466 1.2104 -2.3446 37 1 6.0096 4.5761 -0.4786 38 1 6.8358 6.8688 -0.4930 39 1 4.1354 11.4767 2.1866 40 1 3.3876 5.5077 2.7924 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152280042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:35 Heat of formation + Delta-G solvation = 34.329297 kcal Electronic energy + Delta-G solvation = -24174.011737 eV Core-core repulsion = 20694.648601 eV Total energy + Delta-G solvation = -3479.363136 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.75782 -39.01643 -36.40045 -35.32670 -34.08496 -33.00393 -31.64424 -29.72355 -29.64919 -28.05723 -25.14225 -24.19120 -22.56543 -22.17170 -21.36027 -20.52074 -19.45834 -18.51426 -17.91272 -16.92839 -16.54954 -15.62885 -15.23460 -15.02745 -14.79667 -14.48045 -14.14955 -14.04376 -13.61587 -13.51562 -13.25485 -12.85659 -12.34400 -12.19351 -12.07282 -11.76421 -11.49230 -11.38922 -11.17833 -11.03424 -10.97014 -10.65827 -10.57998 -10.50507 -10.43227 -10.28966 -9.93712 -9.79400 -9.16641 -8.70613 -8.61438 -8.07902 -7.82915 -7.51163 -6.51870 -4.26554 0.71739 1.03490 1.92505 1.99168 2.83067 3.05784 3.10242 3.15513 3.18791 3.80082 3.99728 4.39886 4.55201 4.67917 4.89244 5.22894 5.41884 5.43259 5.52591 5.60229 5.64511 5.78607 5.85870 6.00970 6.19173 6.21325 6.31207 6.34592 6.46539 6.48811 6.62324 6.64587 6.75214 6.86243 7.03785 7.08136 7.20256 7.24524 7.29299 7.36982 7.80802 7.86351 8.23527 8.90622 9.33248 9.78608 10.50049 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.003780 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.533273 B = 7405.394783 C = 8842.533330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.130 4.130 4 C 0.126 3.874 5 N -0.424 5.424 6 C -0.345 4.345 7 H 0.090 0.910 8 C 0.050 3.950 9 N -0.851 5.851 10 Si 0.909 3.091 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.267 1.267 14 C 0.511 3.489 15 O -0.598 6.598 16 C -0.051 4.051 17 C -0.070 4.070 18 C -0.085 4.085 19 C 0.046 3.954 20 N -0.439 5.439 21 C 0.232 3.768 22 S -0.028 6.028 23 N -0.578 5.578 24 H 0.424 0.576 25 C 0.055 3.945 26 C -0.086 4.086 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.273 0.727 37 H 0.172 0.828 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 8.552 3.624 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.169 4.169 4 C 0.003 3.997 5 N -0.141 5.141 6 C -0.473 4.473 7 H 0.108 0.892 8 C -0.159 4.159 9 N -0.485 5.485 10 Si 0.734 3.266 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.191 1.191 14 C 0.300 3.700 15 O -0.485 6.485 16 C -0.056 4.056 17 C -0.090 4.090 18 C -0.105 4.105 19 C -0.076 4.076 20 N -0.162 5.162 21 C -0.142 4.142 22 S 0.124 5.876 23 N -0.194 5.194 24 H 0.264 0.736 25 C -0.057 4.057 26 C -0.109 4.109 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.189 0.811 38 H 0.148 0.852 39 H 0.068 0.932 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.746 9.361 3.999 10.847 hybrid contribution -1.465 -0.698 -1.079 1.948 sum -5.211 8.664 2.920 10.523 Atomic orbital electron populations 1.21759 0.96611 1.00725 1.01487 1.21432 0.95025 0.97639 1.01659 1.21937 0.97721 0.95686 1.01560 1.21288 0.91066 0.84624 1.02753 1.43241 1.54276 1.11653 1.04911 1.19385 1.30592 1.02368 0.94924 0.89205 1.25496 0.93963 0.96262 1.00138 1.69924 1.24596 1.18572 1.35456 0.86213 0.79315 0.78770 0.82290 1.19671 1.20576 1.19142 1.18198 0.81510 0.86186 0.84137 1.90644 1.55456 1.70580 1.31799 1.19933 0.96797 0.94091 0.94802 1.21808 0.94567 0.95722 0.96943 1.20079 1.00676 0.91725 0.97992 1.19282 0.98602 0.90972 0.98759 1.70946 1.21717 1.10100 1.13422 1.24199 0.96904 0.94558 0.98562 1.86967 1.54252 0.98182 1.48194 1.43479 1.36411 1.08291 1.31196 0.73612 1.18829 1.01384 0.89394 0.96048 1.19943 1.01706 0.88605 1.00612 0.93079 0.93038 0.93385 0.92238 0.92314 0.92599 0.92263 0.88993 0.92662 0.91651 0.81133 0.85244 0.93249 0.85469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.05 16 3 C -0.13 -2.50 5.49 -26.73 -0.15 -2.65 16 4 C 0.13 2.83 4.83 -4.04 -0.02 2.81 16 5 N -0.42 -10.09 2.46 -116.06 -0.29 -10.37 16 6 C -0.34 -8.04 5.90 -15.00 -0.09 -8.12 16 7 H 0.09 2.07 6.95 -52.48 -0.36 1.70 16 8 C 0.05 1.15 4.64 -17.46 -0.08 1.07 16 9 N -0.85 -20.85 11.89 55.50 0.66 -20.19 16 10 Si 0.91 18.13 29.58 -169.99 -5.03 13.10 16 11 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 13 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 14 C 0.51 12.21 7.31 -12.56 -0.09 12.12 16 15 O -0.60 -15.47 16.48 5.24 0.09 -15.39 16 16 C -0.05 -1.08 5.47 -104.91 -0.57 -1.66 16 17 C -0.07 -1.40 7.88 -39.58 -0.31 -1.72 16 18 C -0.08 -1.55 10.03 -39.63 -0.40 -1.95 16 19 C 0.05 0.85 7.22 -84.60 -0.61 0.24 16 20 N -0.44 -7.63 11.30 -10.81 -0.12 -7.75 16 21 C 0.23 3.32 8.44 -88.38 -0.75 2.58 16 22 S -0.03 -0.29 26.28 -107.50 -2.83 -3.11 16 23 N -0.58 -7.87 6.28 -10.57 -0.07 -7.94 16 24 H 0.42 4.21 8.96 -40.82 -0.37 3.84 16 25 C 0.06 0.95 7.28 -83.85 -0.61 0.34 16 26 C -0.09 -1.60 9.62 -39.08 -0.38 -1.98 16 27 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 2.15 6.14 -51.93 -0.32 1.83 16 35 H 0.05 1.30 7.62 -51.93 -0.40 0.91 16 36 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 37 H 0.17 3.67 5.48 -52.48 -0.29 3.38 16 38 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.10 0.85 9.55 96.90 0.93 1.77 16 40 H 0.13 2.23 7.98 -52.49 -0.42 1.81 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -28.20 351.60 -9.87 -38.07 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -3.74 Total: 10.88 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -3.84 Total: -2.61 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.19 Total: -46.25 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.09 Total: -15.39 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -2.83 Total: -3.11 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.20 -9.87 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152280042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.399 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds