Wall clock time and date at job start Tue Mar 31 2020 12:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47081 * 2 1 4 4 C 1.52997 * 109.46677 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46923 * 179.97438 * 4 3 2 6 6 C 1.36941 * 120.00159 * 90.00237 * 5 4 3 7 7 H 1.07997 * 119.99857 * 352.05530 * 6 5 4 8 8 C 1.38811 * 119.99829 * 171.78490 * 6 5 4 9 9 N 1.31617 * 120.00563 * 41.60848 * 8 6 5 10 10 Si 1.86808 * 119.99385 * 221.60304 * 8 6 5 11 11 H 1.48502 * 109.46676 * 63.51354 * 10 8 6 12 12 H 1.48507 * 109.46739 * 183.50612 * 10 8 6 13 13 H 1.48494 * 109.47453 * 303.51173 * 10 8 6 14 14 C 1.46506 * 120.00295 * 270.00152 * 5 4 3 15 15 F 1.39902 * 109.46734 * 357.20027 * 14 5 4 16 16 F 1.39898 * 109.47316 * 117.20029 * 14 5 4 17 17 C 1.50700 * 109.47202 * 237.20179 * 14 5 4 18 18 C 1.38616 * 120.43786 * 207.27319 * 17 14 5 19 19 C 1.38577 * 118.42816 * 179.73803 * 18 17 14 20 20 C 1.50701 * 120.43880 * 180.27745 * 19 18 17 21 21 N 1.32338 * 119.12029 * 0.52852 * 19 18 17 22 22 C 1.31907 * 120.80731 * 359.72794 * 21 19 18 23 23 Cl 1.73604 * 119.14144 * 180.02562 * 22 21 19 24 24 N 1.31933 * 121.71826 * 0.02562 * 22 21 19 25 25 H 1.09003 * 109.46571 * 60.00222 * 1 2 3 26 26 H 1.09003 * 109.47269 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47259 * 300.00218 * 1 2 3 28 28 H 1.08997 * 109.47259 * 239.99782 * 2 1 3 29 29 H 1.09003 * 109.46571 * 119.99778 * 2 1 3 30 30 H 1.08997 * 109.47252 * 59.99778 * 3 2 1 31 31 H 1.09000 * 109.47085 * 299.99884 * 3 2 1 32 32 H 1.09004 * 109.47565 * 60.00247 * 4 3 2 33 33 H 1.09000 * 109.47480 * 299.99902 * 4 3 2 34 34 H 0.96996 * 120.00221 * 179.05601 * 9 8 6 35 35 H 1.08000 * 120.78676 * 359.96687 * 18 17 14 36 36 H 1.08993 * 109.47576 * 270.25088 * 20 19 18 37 37 H 1.09007 * 109.46679 * 30.25423 * 20 19 18 38 38 H 1.09001 * 109.46705 * 150.24748 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2862 3.4698 1.1857 7 1 3.9865 3.0117 2.1166 8 6 4.9073 4.7112 1.1913 9 7 4.5833 5.6134 0.2894 10 14 6.2031 5.1013 2.4791 11 1 7.3646 4.1928 2.3035 12 1 6.6481 6.5095 2.3228 13 1 5.6269 4.9117 3.8345 14 6 4.3031 3.5135 -1.2690 15 9 4.0616 2.6356 -2.3312 16 9 3.4490 4.6166 -1.3724 17 6 5.7350 3.9806 -1.3189 18 6 6.0868 5.0873 -2.0758 19 6 7.4146 5.4836 -2.0875 20 6 7.8460 6.6841 -2.8898 21 7 8.2996 4.7909 -1.3887 22 6 7.9299 3.7392 -0.6836 23 17 9.1268 2.8624 0.2177 24 7 6.6742 3.3362 -0.6454 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9284 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 5.0075 6.4856 0.3017 35 1 5.3429 5.6301 -2.6402 36 1 8.1193 6.3691 -3.8968 37 1 7.0253 7.3995 -2.9430 38 1 8.7054 7.1522 -2.4097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165159843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:27 Heat of formation + Delta-G solvation = -15.498508 kcal Electronic energy + Delta-G solvation = -26393.119796 eV Core-core repulsion = 22355.322728 eV Total energy + Delta-G solvation = -4037.797067 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.096 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -47.85964 -45.74651 -40.39839 -36.44044 -36.29227 -34.55022 -33.46905 -31.95893 -31.48550 -28.48250 -28.13760 -25.69794 -24.31753 -23.29948 -22.06685 -20.85626 -20.24113 -18.25320 -17.08156 -16.80643 -16.34127 -15.26813 -15.09559 -14.95596 -14.82619 -14.66070 -14.31198 -13.59891 -13.44801 -12.98599 -12.92530 -12.68909 -12.64043 -12.40479 -12.20990 -12.14779 -12.06709 -11.38850 -11.34677 -11.19970 -11.04267 -10.99296 -10.85034 -10.69854 -10.54811 -10.45864 -10.36746 -10.00324 -9.90771 -9.88864 -8.88668 -8.70676 -8.42380 -7.52559 -6.25790 -3.36428 1.39678 1.55157 1.96404 3.27802 3.38847 3.49712 3.96477 4.18050 4.28092 4.56210 4.86413 4.92331 5.11474 5.29067 5.34272 5.44077 5.52090 5.63097 5.69207 5.71812 5.76585 5.86332 6.05875 6.10045 6.12060 6.20269 6.25266 6.26359 6.40821 6.45529 6.56248 6.74942 6.80740 7.00993 7.51765 7.58304 7.71508 8.51291 8.62885 9.36572 9.77882 10.76764 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.005841 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.149677 B = 4792.208131 C = 5051.408836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.148 3.852 5 N -0.593 5.593 6 C -0.243 4.243 7 H 0.097 0.903 8 C 0.009 3.991 9 N -0.849 5.849 10 Si 0.855 3.145 11 H -0.264 1.264 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.588 3.412 15 F -0.208 7.208 16 F -0.159 7.159 17 C 0.202 3.798 18 C -0.176 4.176 19 C 0.157 3.843 20 C -0.096 4.096 21 N -0.523 5.523 22 C 0.359 3.641 23 Cl 0.001 6.999 24 N -0.463 5.463 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.260 0.740 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -3.450 -5.554 6.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.179 4.179 4 C 0.023 3.977 5 N -0.318 5.318 6 C -0.369 4.369 7 H 0.114 0.886 8 C -0.191 4.191 9 N -0.491 5.491 10 Si 0.682 3.318 11 H -0.190 1.190 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.463 3.537 15 F -0.190 7.190 16 F -0.140 7.140 17 C 0.052 3.948 18 C -0.198 4.198 19 C 0.013 3.987 20 C -0.153 4.153 21 N -0.243 5.243 22 C 0.065 3.935 23 Cl 0.029 6.971 24 N -0.182 5.182 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.166 0.834 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.652 -3.844 -5.017 6.533 hybrid contribution 0.063 0.941 0.541 1.088 sum 1.715 -2.903 -4.476 5.604 Atomic orbital electron populations 1.21759 0.96544 1.00691 1.01684 1.21474 0.95269 0.97790 1.01398 1.22212 0.98375 0.95166 1.02133 1.20914 0.91634 0.84368 1.00799 1.45091 1.75446 1.10374 1.00867 1.18971 1.32089 1.01586 0.84296 0.88567 1.24779 1.00225 0.95563 0.98525 1.70670 1.37695 1.03431 1.37305 0.87065 0.85324 0.77220 0.82145 1.18978 1.22035 1.20460 1.17031 0.83979 0.75057 0.77604 1.92931 1.95400 1.71128 1.59504 1.93153 1.71132 1.54241 1.95457 1.21753 0.94260 0.90760 0.88037 1.22375 0.97501 0.98367 1.01591 1.21322 0.88930 0.95074 0.93348 1.20659 1.02724 0.93330 0.98585 1.67476 1.39527 1.07325 1.09965 1.22593 0.87695 0.90078 0.93134 1.98372 1.53166 1.73690 1.71878 1.67500 0.98856 1.32815 1.19012 0.93011 0.93448 0.92941 0.92481 0.92363 0.91888 0.92736 0.92877 0.91866 0.92962 0.83430 0.90258 0.90127 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.68 5.93 -26.73 -0.16 -1.84 16 3 C -0.14 -2.43 5.54 -26.73 -0.15 -2.58 16 4 C 0.15 2.90 5.39 -4.04 -0.02 2.88 16 5 N -0.59 -13.94 2.38 -172.92 -0.41 -14.35 16 6 C -0.24 -6.21 9.09 -15.06 -0.14 -6.35 16 7 H 0.10 2.44 8.06 -52.49 -0.42 2.01 16 8 C 0.01 0.24 3.30 -17.43 -0.06 0.18 16 9 N -0.85 -22.36 7.99 55.49 0.44 -21.92 16 10 Si 0.86 21.27 29.56 -169.99 -5.03 16.25 16 11 H -0.26 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.59 13.73 2.28 -5.19 -0.01 13.72 16 15 F -0.21 -4.49 15.56 2.25 0.04 -4.46 16 16 F -0.16 -3.94 13.82 2.25 0.03 -3.91 16 17 C 0.20 4.62 3.65 -82.25 -0.30 4.32 16 18 C -0.18 -3.55 8.26 -39.32 -0.32 -3.87 16 19 C 0.16 2.92 6.82 -82.25 -0.56 2.36 16 20 C -0.10 -1.27 10.22 36.01 0.37 -0.90 16 21 N -0.52 -10.76 10.34 -7.89 -0.08 -10.84 16 22 C 0.36 7.86 8.18 -91.94 -0.75 7.10 16 23 Cl 0.00 0.02 29.27 -51.86 -1.52 -1.49 16 24 N -0.46 -10.80 8.69 -7.88 -0.07 -10.87 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 1.01 7.09 -51.93 -0.37 0.64 16 33 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 34 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 35 H 0.15 2.72 7.76 -52.49 -0.41 2.31 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -28.21 338.13 -8.21 -36.42 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -4.98 Total: -3.46 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: -1.74 Total: 13.54 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.12 Total: -57.99 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 0.07 Total: -8.37 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.52 Total: -1.49 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.21 -8.21 -36.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165159843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.921 kcal (2) G-P(sol) polarization free energy of solvation -28.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds