Wall clock time and date at job start Tue Mar 31 2020 12:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46726 * 2 1 4 4 C 1.52999 * 109.47000 * 184.71050 * 3 2 1 5 5 N 1.46500 * 109.47148 * 185.04191 * 4 3 2 6 6 C 1.36938 * 119.99874 * 93.51918 * 5 4 3 7 7 H 1.07990 * 119.99942 * 217.09802 * 6 5 4 8 8 C 1.38818 * 119.99771 * 36.82223 * 6 5 4 9 9 N 1.31615 * 119.99676 * 214.49972 * 8 6 5 10 10 Si 1.86799 * 119.99873 * 34.50277 * 8 6 5 11 11 H 1.48495 * 109.47206 * 93.78980 * 10 8 6 12 12 H 1.48511 * 109.46648 * 213.78727 * 10 8 6 13 13 H 1.48496 * 109.47330 * 333.78517 * 10 8 6 14 14 C 1.46501 * 120.00116 * 273.51850 * 5 4 3 15 15 F 1.39898 * 109.47330 * 293.42473 * 14 5 4 16 16 F 1.39901 * 109.46682 * 53.42102 * 14 5 4 17 17 C 1.50702 * 109.46972 * 173.42078 * 14 5 4 18 18 C 1.38856 * 121.01595 * 113.75199 * 17 14 5 19 19 C 1.38607 * 117.98385 * 179.78631 * 18 17 14 20 20 C 1.50699 * 120.06523 * 180.24057 * 19 18 17 21 21 N 1.31933 * 119.87391 * 0.49681 * 19 18 17 22 22 N 1.28350 * 122.20087 * 359.74264 * 21 19 18 23 23 C 1.32051 * 122.15990 * 0.02562 * 22 21 19 24 24 Cl 1.73604 * 120.09061 * 179.97438 * 23 22 21 25 25 H 1.08994 * 109.47384 * 59.99940 * 1 2 3 26 26 H 1.08999 * 109.46730 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47175 * 299.99672 * 1 2 3 28 28 H 1.08997 * 109.47175 * 240.00328 * 2 1 3 29 29 H 1.08994 * 109.47384 * 120.00059 * 2 1 3 30 30 H 1.08995 * 109.46766 * 64.71486 * 3 2 1 31 31 H 1.08991 * 109.46951 * 304.71157 * 3 2 1 32 32 H 1.09000 * 109.47024 * 65.03977 * 4 3 2 33 33 H 1.09003 * 109.46992 * 305.04582 * 4 3 2 34 34 H 0.97007 * 119.99940 * 179.97438 * 9 8 6 35 35 H 1.07999 * 121.01210 * 359.97438 * 18 17 14 36 36 H 1.09007 * 109.47144 * 270.25855 * 20 19 18 37 37 H 1.08999 * 109.46977 * 30.25020 * 20 19 18 38 38 H 1.08995 * 109.47346 * 150.25654 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5654 1.4443 -0.1185 5 7 4.0630 2.8169 0.0024 6 6 4.4550 3.2980 1.2230 7 1 4.2538 4.3253 1.4884 8 6 5.1060 2.4637 2.1215 9 7 4.9019 2.6018 3.4143 10 14 6.2717 1.1452 1.4954 11 1 7.6592 1.6742 1.4877 12 1 6.1996 -0.0420 2.3848 13 1 5.8830 0.7549 0.1164 14 6 4.1413 3.6747 -1.1827 15 9 5.1034 3.1675 -2.0627 16 9 2.8962 3.7045 -1.8198 17 6 4.5267 5.0711 -0.7674 18 6 5.7459 5.6187 -1.1439 19 6 6.0342 6.9101 -0.7309 20 6 7.3415 7.5523 -1.1175 21 7 5.1640 7.5741 0.0056 22 7 4.0388 7.0673 0.3584 23 6 3.6771 5.8465 0.0080 24 17 2.1422 5.2141 0.5160 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7472 1.9314 0.9292 31 1 1.6093 1.9801 -0.8447 32 1 3.8550 1.0367 -1.0870 33 1 3.9921 0.8318 0.6758 34 1 5.3564 2.0186 4.0422 35 1 6.4471 5.0567 -1.7430 36 1 8.0925 7.3330 -0.3585 37 1 7.6703 7.1570 -2.0786 38 1 7.2075 8.6312 -1.1949 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165160450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:29 Heat of formation + Delta-G solvation = -23.186533 kcal Electronic energy + Delta-G solvation = -26299.026368 eV Core-core repulsion = 22260.895923 eV Total energy + Delta-G solvation = -4038.130445 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.096 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.30555 -46.40567 -40.89093 -36.71177 -36.21583 -34.31899 -33.74983 -32.92037 -31.66149 -28.52392 -28.11984 -26.04502 -24.59459 -23.73208 -22.39867 -20.83801 -20.61218 -18.03871 -17.75124 -16.94958 -16.56112 -16.30045 -16.08463 -15.09250 -14.77864 -14.68876 -14.09401 -13.66160 -13.58018 -13.28001 -13.17791 -13.06935 -12.94639 -12.75744 -12.62156 -12.49814 -12.15074 -11.83306 -11.61357 -11.52997 -11.23654 -11.05872 -10.90015 -10.86450 -10.67603 -10.51075 -10.16972 -10.01648 -9.82152 -9.64170 -9.47064 -9.09820 -8.79627 -7.53922 -6.36267 -3.77595 0.77193 0.95219 2.09185 3.19012 3.32545 3.38560 3.49840 3.66677 4.18253 4.27672 4.43849 4.50878 4.78579 4.89744 4.93000 5.05608 5.28147 5.39039 5.40933 5.52075 5.53604 5.58510 5.74689 5.88205 5.93373 6.05121 6.16353 6.20046 6.24575 6.26589 6.32029 6.48911 6.58027 6.88305 7.06867 7.60373 7.93188 8.52214 8.73956 9.31786 9.62149 10.75172 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.006826 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.560034 B = 4101.272438 C = 4807.217846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.136 4.136 4 C 0.150 3.850 5 N -0.592 5.592 6 C -0.309 4.309 7 H 0.087 0.913 8 C 0.071 3.929 9 N -0.853 5.853 10 Si 0.843 3.157 11 H -0.285 1.285 12 H -0.288 1.288 13 H -0.257 1.257 14 C 0.545 3.455 15 F -0.215 7.215 16 F -0.196 7.196 17 C -0.087 4.087 18 C -0.077 4.077 19 C 0.062 3.938 20 C -0.096 4.096 21 N -0.222 5.222 22 N -0.236 5.236 23 C 0.162 3.838 24 Cl 0.025 6.975 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.270 0.730 35 H 0.162 0.838 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.493 1.994 -9.604 9.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.175 4.175 4 C 0.026 3.974 5 N -0.320 5.320 6 C -0.435 4.435 7 H 0.104 0.896 8 C -0.136 4.136 9 N -0.488 5.488 10 Si 0.669 3.331 11 H -0.212 1.212 12 H -0.214 1.214 13 H -0.181 1.181 14 C 0.420 3.580 15 F -0.197 7.197 16 F -0.177 7.177 17 C -0.100 4.100 18 C -0.106 4.106 19 C -0.084 4.084 20 C -0.154 4.154 21 N -0.066 5.066 22 N -0.079 5.079 23 C -0.010 4.010 24 Cl 0.054 6.946 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.179 0.821 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.015 3.274 -8.571 9.231 hybrid contribution 1.027 -2.339 -0.918 2.714 sum 0.011 0.935 -9.489 9.535 Atomic orbital electron populations 1.21738 0.96429 1.00671 1.01639 1.21495 0.95366 0.98010 1.01310 1.22146 0.97342 0.95213 1.02808 1.21235 0.92475 0.84332 0.99354 1.45123 1.72851 1.11460 1.02536 1.18600 1.36886 1.00232 0.87790 0.89567 1.25353 0.96438 0.97248 0.94523 1.70031 1.38492 1.38545 1.01770 0.87443 0.83209 0.82046 0.80449 1.21202 1.21382 1.18067 1.18366 0.73355 0.86794 0.79467 1.93025 1.65215 1.88836 1.72661 1.93031 1.44139 1.96855 1.83713 1.20921 0.95520 0.95538 0.98059 1.22138 0.95354 0.95152 0.97974 1.22844 0.98190 0.92349 0.94973 1.20650 0.90993 1.01535 1.02215 1.72920 0.96962 1.28570 1.08124 1.72963 1.09606 1.08997 1.16294 1.23117 0.91876 0.92282 0.93688 1.98451 1.23422 1.83857 1.88909 0.93093 0.93499 0.92820 0.92769 0.92296 0.90980 0.92327 0.94048 0.91740 0.92024 0.82085 0.89577 0.90163 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.14 -2.49 5.35 -26.73 -0.14 -2.64 16 4 C 0.15 3.10 3.89 -4.04 -0.02 3.09 16 5 N -0.59 -13.23 2.01 -172.92 -0.35 -13.57 16 6 C -0.31 -7.80 7.89 -15.06 -0.12 -7.91 16 7 H 0.09 2.34 4.82 -52.49 -0.25 2.09 16 8 C 0.07 1.87 5.00 -17.43 -0.09 1.79 16 9 N -0.85 -23.84 13.97 55.49 0.78 -23.07 16 10 Si 0.84 19.95 26.33 -169.99 -4.48 15.48 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.26 -5.85 5.94 56.52 0.34 -5.52 16 14 C 0.54 11.12 1.98 -5.19 -0.01 11.11 16 15 F -0.22 -4.25 16.02 2.25 0.04 -4.21 16 16 F -0.20 -3.84 14.44 2.25 0.03 -3.81 16 17 C -0.09 -1.71 4.10 -104.21 -0.43 -2.14 16 18 C -0.08 -1.28 9.24 -39.22 -0.36 -1.64 16 19 C 0.06 0.96 6.86 -82.41 -0.57 0.40 16 20 C -0.10 -1.00 10.19 36.01 0.37 -0.63 16 21 N -0.22 -4.10 11.43 33.59 0.38 -3.72 16 22 N -0.24 -4.80 11.49 32.88 0.38 -4.42 16 23 C 0.16 3.31 5.58 -17.28 -0.10 3.21 16 24 Cl 0.03 0.50 25.35 -51.86 -1.31 -0.81 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.06 6.97 -51.93 -0.36 0.70 16 32 H 0.04 0.81 8.06 -51.93 -0.42 0.40 16 33 H 0.06 1.42 4.55 -51.93 -0.24 1.18 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.16 2.26 7.35 -52.49 -0.39 1.87 16 36 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 37 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -28.58 330.41 -5.46 -34.05 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.66 Total: -1.87 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.25 Total: 0.98 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 1.19 Total: -44.78 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 0.07 Total: -8.02 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.48 Total: 15.48 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -1.31 Total: -0.81 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.58 -5.46 -34.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165160450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.860 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds