Wall clock time and date at job start Tue Mar 31 2020 12:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46726 * 2 1 4 4 C 1.52999 * 109.47000 * 184.71050 * 3 2 1 5 5 N 1.46500 * 109.47148 * 185.04191 * 4 3 2 6 6 C 1.36938 * 119.99874 * 93.51918 * 5 4 3 7 7 H 1.07990 * 119.99942 * 217.09802 * 6 5 4 8 8 C 1.38818 * 119.99771 * 36.82223 * 6 5 4 9 9 N 1.31615 * 119.99676 * 214.49972 * 8 6 5 10 10 Si 1.86799 * 119.99873 * 34.50277 * 8 6 5 11 11 H 1.48495 * 109.47206 * 93.78980 * 10 8 6 12 12 H 1.48511 * 109.46648 * 213.78727 * 10 8 6 13 13 H 1.48496 * 109.47330 * 333.78517 * 10 8 6 14 14 C 1.46501 * 120.00116 * 273.51850 * 5 4 3 15 15 F 1.39898 * 109.47330 * 293.42473 * 14 5 4 16 16 F 1.39901 * 109.46682 * 53.42102 * 14 5 4 17 17 C 1.50702 * 109.46972 * 173.42078 * 14 5 4 18 18 C 1.38856 * 121.01595 * 113.75199 * 17 14 5 19 19 C 1.38607 * 117.98385 * 179.78631 * 18 17 14 20 20 C 1.50699 * 120.06523 * 180.24057 * 19 18 17 21 21 N 1.31933 * 119.87391 * 0.49681 * 19 18 17 22 22 N 1.28350 * 122.20087 * 359.74264 * 21 19 18 23 23 C 1.32051 * 122.15990 * 0.02562 * 22 21 19 24 24 Cl 1.73604 * 120.09061 * 179.97438 * 23 22 21 25 25 H 1.08994 * 109.47384 * 59.99940 * 1 2 3 26 26 H 1.08999 * 109.46730 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47175 * 299.99672 * 1 2 3 28 28 H 1.08997 * 109.47175 * 240.00328 * 2 1 3 29 29 H 1.08994 * 109.47384 * 120.00059 * 2 1 3 30 30 H 1.08995 * 109.46766 * 64.71486 * 3 2 1 31 31 H 1.08991 * 109.46951 * 304.71157 * 3 2 1 32 32 H 1.09000 * 109.47024 * 65.03977 * 4 3 2 33 33 H 1.09003 * 109.46992 * 305.04582 * 4 3 2 34 34 H 0.97007 * 119.99940 * 179.97438 * 9 8 6 35 35 H 1.07999 * 121.01210 * 359.97438 * 18 17 14 36 36 H 1.09007 * 109.47144 * 270.25855 * 20 19 18 37 37 H 1.08999 * 109.46977 * 30.25020 * 20 19 18 38 38 H 1.08995 * 109.47346 * 150.25654 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5654 1.4443 -0.1185 5 7 4.0630 2.8169 0.0024 6 6 4.4550 3.2980 1.2230 7 1 4.2538 4.3253 1.4884 8 6 5.1060 2.4637 2.1215 9 7 4.9019 2.6018 3.4143 10 14 6.2717 1.1452 1.4954 11 1 7.6592 1.6742 1.4877 12 1 6.1996 -0.0420 2.3848 13 1 5.8830 0.7549 0.1164 14 6 4.1413 3.6747 -1.1827 15 9 5.1034 3.1675 -2.0627 16 9 2.8962 3.7045 -1.8198 17 6 4.5267 5.0711 -0.7674 18 6 5.7459 5.6187 -1.1439 19 6 6.0342 6.9101 -0.7309 20 6 7.3415 7.5523 -1.1175 21 7 5.1640 7.5741 0.0056 22 7 4.0388 7.0673 0.3584 23 6 3.6771 5.8465 0.0080 24 17 2.1422 5.2141 0.5160 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7472 1.9314 0.9292 31 1 1.6093 1.9801 -0.8447 32 1 3.8550 1.0367 -1.0870 33 1 3.9921 0.8318 0.6758 34 1 5.3564 2.0186 4.0422 35 1 6.4471 5.0567 -1.7430 36 1 8.0925 7.3330 -0.3585 37 1 7.6703 7.1570 -2.0786 38 1 7.2075 8.6312 -1.1949 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165160450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:28 Heat of formation + Delta-G solvation = -39.510633 kcal Electronic energy + Delta-G solvation = -26299.734234 eV Core-core repulsion = 22260.895923 eV Total energy + Delta-G solvation = -4038.838311 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.096 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.90938 -48.00237 -42.29362 -38.34097 -37.76828 -35.74337 -35.05001 -34.47548 -33.44967 -29.96216 -29.28364 -27.67094 -26.17578 -25.17287 -23.82897 -22.47714 -21.97839 -19.56997 -19.36668 -18.54851 -18.27577 -17.84220 -17.62133 -16.64517 -16.41842 -16.07308 -15.33644 -15.11760 -15.02217 -14.84296 -14.74287 -14.63170 -14.36005 -14.32920 -14.09002 -13.61378 -13.38242 -13.30504 -13.14169 -13.03612 -12.72567 -12.65148 -12.46413 -12.35448 -12.08997 -11.91614 -11.75468 -11.51409 -11.41932 -11.26362 -10.91375 -10.72778 -10.50005 -9.38964 -8.36273 -5.75125 -0.65638 -0.42494 0.59493 1.30354 1.41593 1.49387 2.02239 2.17616 2.35614 2.69893 2.91761 2.98120 3.11288 3.41656 3.54287 3.64278 4.00088 4.09409 4.14314 4.24016 4.35538 4.42818 4.54913 4.71372 4.73844 4.76576 4.89691 4.94889 4.98131 5.01650 5.13923 5.24947 5.34796 5.44750 5.55644 5.75363 6.00113 6.61948 7.33093 7.34605 7.71064 8.79177 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.006826 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.560034 B = 4101.272438 C = 4807.217846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.125 4.125 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.288 4.288 7 H 0.063 0.937 8 C 0.026 3.974 9 N -0.901 5.901 10 Si 0.897 3.103 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.242 1.242 14 C 0.550 3.450 15 F -0.207 7.207 16 F -0.192 7.192 17 C -0.113 4.113 18 C -0.069 4.069 19 C 0.072 3.928 20 C -0.094 4.094 21 N -0.242 5.242 22 N -0.260 5.260 23 C 0.146 3.854 24 Cl 0.013 6.987 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.269 0.731 35 H 0.193 0.807 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 1.432 -11.914 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.164 4.164 4 C 0.019 3.981 5 N -0.329 5.329 6 C -0.415 4.415 7 H 0.081 0.919 8 C -0.177 4.177 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.165 1.165 14 C 0.426 3.574 15 F -0.189 7.189 16 F -0.174 7.174 17 C -0.126 4.126 18 C -0.098 4.098 19 C -0.073 4.073 20 C -0.152 4.152 21 N -0.084 5.084 22 N -0.102 5.102 23 C -0.026 4.026 24 Cl 0.042 6.958 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.210 0.790 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.273 2.714 -10.912 11.248 hybrid contribution 0.646 -2.062 -0.285 2.179 sum 0.919 0.653 -11.197 11.254 Atomic orbital electron populations 1.21706 0.94775 1.02073 1.01579 1.21482 0.96836 0.95734 1.01850 1.21996 0.95902 0.97204 1.01287 1.21371 0.93777 0.83440 0.99504 1.45125 1.73132 1.12094 1.02572 1.18433 1.35285 0.99092 0.88727 0.91934 1.25803 0.97912 0.99491 0.94472 1.70119 1.40302 1.40579 1.02943 0.86584 0.80926 0.79764 0.80493 1.21760 1.21793 1.16481 1.18099 0.73533 0.86828 0.78935 1.93021 1.64854 1.88830 1.72149 1.93035 1.43995 1.96845 1.83513 1.21024 0.96943 0.95309 0.99319 1.22621 0.94429 0.95612 0.97164 1.23649 0.99098 0.91907 0.92675 1.20902 0.88089 1.02117 1.04117 1.72875 0.97045 1.29245 1.09275 1.72889 1.10928 1.09238 1.17156 1.23151 0.91983 0.92782 0.94656 1.98432 1.24210 1.84004 1.89196 0.92455 0.91370 0.93633 0.91110 0.92841 0.93827 0.92142 0.92553 0.93112 0.92164 0.78991 0.88332 0.86810 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.12 -3.52 5.93 30.60 0.18 -3.34 16 3 C -0.12 -4.51 5.35 30.60 0.16 -4.34 16 4 C 0.14 5.74 3.89 86.38 0.34 6.07 16 5 N -0.60 -26.43 2.01 -701.00 -1.41 -27.83 16 6 C -0.29 -14.63 7.89 84.03 0.66 -13.96 16 7 H 0.06 3.48 4.82 -2.92 -0.01 3.47 16 8 C 0.03 1.37 5.00 84.86 0.42 1.79 16 9 N -0.90 -51.66 13.97 21.65 0.30 -51.36 16 10 Si 0.90 41.06 26.33 68.60 1.81 42.87 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 13 H -0.24 -10.32 5.94 99.48 0.59 -9.73 16 14 C 0.55 21.70 1.98 85.63 0.17 21.87 16 15 F -0.21 -7.58 16.02 44.97 0.72 -6.85 16 16 F -0.19 -7.34 14.44 44.97 0.65 -6.69 16 17 C -0.11 -4.33 4.10 -19.60 -0.08 -4.41 16 18 C -0.07 -2.13 9.24 22.51 0.21 -1.92 16 19 C 0.07 2.09 6.86 42.63 0.29 2.38 16 20 C -0.09 -1.60 10.19 71.24 0.73 -0.87 16 21 N -0.24 -8.72 11.43 -47.63 -0.54 -9.26 16 22 N -0.26 -10.68 11.49 -49.88 -0.57 -11.25 16 23 C 0.15 6.04 5.58 84.78 0.47 6.51 16 24 Cl 0.01 0.54 25.35 -2.72 -0.07 0.47 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 2.14 6.97 -2.39 -0.02 2.12 16 32 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 33 H 0.05 2.18 4.55 -2.39 -0.01 2.17 16 34 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 35 H 0.19 4.59 7.35 -2.91 -0.02 4.57 16 36 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.11 1.22 8.09 -2.39 -0.02 1.20 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -62.78 330.41 6.13 -56.65 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.98 Total: 6.33 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 4.27 Total: 6.92 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -2.22 Total: -99.71 kcal Atomic # 9 Polarization: -14.91 SS G_CDS: 1.37 Total: -13.54 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.81 Total: 42.87 kcal Atomic # 17 Polarization: 0.54 SS G_CDS: -0.07 Total: 0.47 kcal Total: -62.78 6.13 -56.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165160450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.140 kcal (2) G-P(sol) polarization free energy of solvation -62.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds