Wall clock time and date at job start Tue Mar 31 2020 12:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.67477 * 2 1 4 4 C 1.53199 * 109.57206 * 239.67993 * 2 1 3 5 5 C 1.50684 * 109.08894 * 296.95922 * 4 2 1 6 6 O 1.21537 * 119.70377 * 151.14609 * 5 4 2 7 7 C 1.39897 * 120.59138 * 331.17247 * 5 4 2 8 8 C 1.35071 * 121.68090 * 359.79849 * 7 5 4 9 9 N 1.36400 * 119.42387 * 179.80806 * 8 7 5 10 10 C 1.38850 * 120.00200 * 118.68988 * 9 8 7 11 11 C 1.38678 * 120.28465 * 352.81268 * 10 9 8 12 12 C 1.38320 * 120.01507 * 179.97438 * 11 10 9 13 13 Cl 1.73595 * 119.69977 * 179.97438 * 12 11 10 14 14 C 1.39054 * 120.59485 * 359.97438 * 12 11 10 15 15 C 1.36401 * 120.58175 * 359.97438 * 14 12 11 16 16 C 1.40776 * 119.95667 * 359.79335 * 15 14 12 17 17 C 1.40982 * 120.28959 * 180.23216 * 16 15 14 18 18 H 1.07997 * 120.00312 * 207.42377 * 17 16 15 19 19 C 1.39951 * 120.00373 * 27.42334 * 17 16 15 20 20 N 1.30872 * 119.99971 * 12.87589 * 19 17 16 21 21 Si 1.86799 * 120.00278 * 192.88013 * 19 17 16 22 22 H 1.48496 * 109.47253 * 59.99621 * 21 19 17 23 23 H 1.48504 * 109.47052 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46920 * 299.99539 * 21 19 17 25 25 C 1.50544 * 121.16034 * 359.80303 * 8 7 5 26 26 H 1.09000 * 109.47174 * 299.68344 * 1 2 3 27 27 H 1.08994 * 109.47250 * 59.68452 * 1 2 3 28 28 H 1.08998 * 109.46992 * 179.69013 * 1 2 3 29 29 H 1.09003 * 109.46849 * 180.31576 * 3 2 1 30 30 H 1.08998 * 109.47076 * 300.31233 * 3 2 1 31 31 H 1.09001 * 109.47872 * 60.31464 * 3 2 1 32 32 H 1.08997 * 109.52894 * 56.84676 * 4 2 1 33 33 H 1.09001 * 109.52869 * 177.07894 * 4 2 1 34 34 H 1.08002 * 119.16252 * 179.82077 * 7 5 4 35 35 H 0.97004 * 119.99337 * 298.69384 * 9 8 7 36 36 H 1.08004 * 119.98966 * 359.94764 * 11 10 9 37 37 H 1.08003 * 119.71041 * 180.02562 * 14 12 11 38 38 H 1.07996 * 120.02103 * 180.02562 * 15 14 12 39 39 H 0.96988 * 120.00274 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.47520 * 269.66749 * 25 8 7 41 41 H 1.09000 * 109.47010 * 149.66358 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0451 1.4406 0.0000 4 6 2.0432 -0.7287 -1.2460 5 6 1.6000 -2.1679 -1.1928 6 8 1.4169 -2.7803 -2.2265 7 6 1.3969 -2.8053 0.0359 8 6 1.5918 -2.1640 1.2085 9 7 1.3762 -2.8288 2.3798 10 6 2.4199 -3.0102 3.2775 11 6 3.7132 -2.6517 2.9281 12 6 4.7486 -2.8343 3.8269 13 17 6.3644 -2.3833 3.3807 14 6 4.5067 -3.3758 5.0846 15 6 3.2440 -3.7359 5.4540 16 6 2.1718 -3.5560 4.5598 17 6 0.8631 -3.9212 4.9362 18 1 0.1447 -4.2082 4.1826 19 6 0.4949 -3.9119 6.2863 20 7 1.2657 -3.3321 7.1709 21 14 -1.0968 -4.7271 6.8260 22 1 -1.0583 -6.1694 6.4747 23 1 -1.2549 -4.5801 8.2953 24 1 -2.2425 -4.0803 6.1373 25 6 2.0430 -0.7282 1.2455 26 1 -0.3633 0.5089 0.8928 27 1 -0.3633 0.5187 -0.8871 28 1 -0.3633 -1.0276 -0.0056 29 1 3.1351 1.4367 -0.0057 30 1 1.6790 1.9574 -0.8872 31 1 1.6883 1.9542 0.8928 32 1 1.6359 -0.2546 -2.1390 33 1 3.1320 -0.6833 -1.2721 34 1 1.0764 -3.8366 0.0471 35 1 0.4938 -3.1750 2.5856 36 1 3.9120 -2.2302 1.9538 37 1 5.3258 -3.5117 5.7754 38 1 3.0665 -4.1553 6.4333 39 1 1.0107 -3.3260 8.1066 40 1 3.1321 -0.6899 1.2660 41 1 1.6456 -0.2454 2.1383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169953266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:03 Heat of formation + Delta-G solvation = -22.377691 kcal Electronic energy + Delta-G solvation = -24554.746717 eV Core-core repulsion = 21038.588124 eV Total energy + Delta-G solvation = -3516.158592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47363 -38.59365 -37.23053 -35.86018 -35.22607 -33.71285 -31.50172 -29.84038 -28.90810 -27.98373 -27.40979 -26.80386 -25.33588 -22.41442 -21.27962 -20.31190 -19.92316 -17.68547 -17.21143 -16.85231 -16.42060 -15.57675 -15.22449 -15.00633 -14.61150 -14.31524 -14.21516 -13.93950 -13.39423 -13.27069 -13.01540 -12.81823 -12.61232 -12.27746 -12.15123 -11.92015 -11.81880 -11.66870 -11.57792 -11.32660 -11.30325 -10.92940 -10.82202 -10.74177 -10.61570 -10.28076 -10.00188 -9.89096 -9.62837 -9.35102 -9.28246 -8.57087 -7.62883 -7.05222 -6.78253 -4.53821 1.12584 2.44332 2.74655 2.93494 2.94009 2.99020 3.25169 3.30498 3.73801 3.99523 4.36634 4.49000 4.64628 4.76102 4.84583 5.20571 5.31601 5.34191 5.48800 5.53682 5.64619 5.66871 5.71605 5.80089 5.90230 5.99708 6.05504 6.12468 6.13185 6.22429 6.26208 6.49957 6.56974 6.61354 6.69973 6.88729 7.03702 7.13341 7.43694 7.64135 7.76586 7.96376 7.99854 8.30547 8.33546 8.57994 8.62656 9.95232 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.005018 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.137612 B = 5578.722554 C = 7295.157902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.140 4.140 4 C -0.160 4.160 5 C 0.403 3.597 6 O -0.497 6.497 7 C -0.329 4.329 8 C 0.266 3.734 9 N -0.678 5.678 10 C 0.079 3.921 11 C -0.135 4.135 12 C -0.114 4.114 13 Cl -0.127 7.127 14 C -0.111 4.111 15 C -0.133 4.133 16 C 0.091 3.909 17 C -0.458 4.458 18 H 0.076 0.924 19 C 0.077 3.923 20 N -0.790 5.790 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.108 4.108 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.412 0.588 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.285 0.715 40 H 0.094 0.906 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 6.312 -5.800 8.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.054 4.054 3 C -0.197 4.197 4 C -0.198 4.198 5 C 0.288 3.712 6 O -0.378 6.378 7 C -0.353 4.353 8 C 0.162 3.838 9 N -0.305 5.305 10 C -0.017 4.017 11 C -0.157 4.157 12 C -0.141 4.141 13 Cl -0.099 7.099 14 C -0.131 4.131 15 C -0.154 4.154 16 C 0.086 3.914 17 C -0.488 4.488 18 H 0.094 0.906 19 C -0.142 4.142 20 N -0.415 5.415 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.190 1.190 25 C -0.147 4.147 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.145 0.855 35 H 0.252 0.748 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.149 0.851 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.417 6.149 -6.092 8.666 hybrid contribution -0.899 -0.380 0.589 1.140 sum -1.316 5.769 -5.503 8.081 Atomic orbital electron populations 1.21990 0.94021 1.02593 1.02046 1.20547 0.96163 0.95453 0.93257 1.21837 1.01273 0.94462 1.02133 1.22233 1.02964 0.95314 0.99257 1.20333 0.73215 0.89011 0.88679 1.90567 1.42743 1.67339 1.37139 1.21892 1.18676 1.01794 0.92912 1.20098 0.86362 0.90864 0.86462 1.41117 1.12043 1.60248 1.17096 1.17505 0.85876 1.05999 0.92310 1.20002 0.90640 1.06535 0.98553 1.19921 0.82927 1.14426 0.96852 1.98235 1.25830 1.92474 1.93377 1.20302 0.97392 1.01442 0.93945 1.20869 0.89811 1.03446 1.01253 1.17313 0.94083 0.91446 0.88527 1.19215 0.96628 1.40341 0.92568 0.90568 1.25843 0.98883 0.93045 0.96420 1.69762 1.36783 1.31151 1.03762 0.86305 0.81298 0.80721 0.78163 1.18717 1.20146 1.18973 1.21382 1.02549 0.91838 0.98911 0.92057 0.92426 0.92151 0.92204 0.92315 0.92070 0.89236 0.88512 0.85513 0.74764 0.87736 0.88212 0.85121 0.90432 0.88828 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.10 37.16 0.30 -1.34 16 2 C -0.05 -0.60 0.78 -154.34 -0.12 -0.72 16 3 C -0.14 -1.28 8.50 37.15 0.32 -0.97 16 4 C -0.16 -1.93 4.88 -27.79 -0.14 -2.06 16 5 C 0.40 6.32 6.06 -33.70 -0.20 6.11 16 6 O -0.50 -9.39 17.82 5.33 0.10 -9.30 16 7 C -0.33 -5.23 8.66 -40.09 -0.35 -5.58 16 8 C 0.27 4.11 4.24 -81.76 -0.35 3.77 16 9 N -0.68 -12.03 5.15 -6.53 -0.03 -12.06 16 10 C 0.08 1.63 6.52 -83.26 -0.54 1.09 16 11 C -0.13 -2.71 8.57 -39.39 -0.34 -3.05 16 12 C -0.11 -2.33 6.33 -39.25 -0.25 -2.58 16 13 Cl -0.13 -2.30 28.94 -51.86 -1.50 -3.80 16 14 C -0.11 -2.37 9.74 -39.94 -0.39 -2.76 16 15 C -0.13 -3.07 8.61 -39.28 -0.34 -3.40 16 16 C 0.09 2.08 5.57 -106.63 -0.59 1.48 16 17 C -0.46 -10.36 8.53 -37.90 -0.32 -10.69 16 18 H 0.08 1.62 6.66 -52.49 -0.35 1.27 16 19 C 0.08 1.70 5.22 -17.32 -0.09 1.61 16 20 N -0.79 -18.19 10.86 55.55 0.60 -17.59 16 21 Si 0.91 16.82 29.58 -169.99 -5.03 11.79 16 22 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 24 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 25 C -0.11 -1.44 4.01 -27.89 -0.11 -1.56 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.75 6.13 -51.93 -0.32 0.43 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.41 7.13 7.07 -40.82 -0.29 6.84 16 36 H 0.10 1.94 5.49 -52.48 -0.29 1.65 16 37 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 38 H 0.13 3.11 6.19 -52.49 -0.32 2.79 16 39 H 0.28 6.04 8.30 -40.82 -0.34 5.70 16 40 H 0.09 1.27 6.54 -51.93 -0.34 0.93 16 41 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -24.97 345.60 -9.44 -34.41 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.27 Total: 11.98 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -3.51 Total: -20.64 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.57 Total: -29.66 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.10 Total: -9.30 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -1.50 Total: -3.80 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -24.97 -9.44 -34.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169953266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.035 kcal (2) G-P(sol) polarization free energy of solvation -24.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds