Wall clock time and date at job start Tue Mar 31 2020 12:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.67477 * 2 1 4 4 C 1.53199 * 109.57206 * 239.67993 * 2 1 3 5 5 C 1.50684 * 109.08894 * 296.95922 * 4 2 1 6 6 O 1.21537 * 119.70377 * 151.14609 * 5 4 2 7 7 C 1.39897 * 120.59138 * 331.17247 * 5 4 2 8 8 C 1.35071 * 121.68090 * 359.79849 * 7 5 4 9 9 N 1.36400 * 119.42387 * 179.80806 * 8 7 5 10 10 C 1.38850 * 120.00200 * 118.68988 * 9 8 7 11 11 C 1.38678 * 120.28465 * 352.81268 * 10 9 8 12 12 C 1.38320 * 120.01507 * 179.97438 * 11 10 9 13 13 Cl 1.73595 * 119.69977 * 179.97438 * 12 11 10 14 14 C 1.39054 * 120.59485 * 359.97438 * 12 11 10 15 15 C 1.36401 * 120.58175 * 359.97438 * 14 12 11 16 16 C 1.40776 * 119.95667 * 359.79335 * 15 14 12 17 17 C 1.40982 * 120.28959 * 180.23216 * 16 15 14 18 18 H 1.07997 * 120.00312 * 207.42377 * 17 16 15 19 19 C 1.39951 * 120.00373 * 27.42334 * 17 16 15 20 20 N 1.30872 * 119.99971 * 12.87589 * 19 17 16 21 21 Si 1.86799 * 120.00278 * 192.88013 * 19 17 16 22 22 H 1.48496 * 109.47253 * 59.99621 * 21 19 17 23 23 H 1.48504 * 109.47052 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46920 * 299.99539 * 21 19 17 25 25 C 1.50544 * 121.16034 * 359.80303 * 8 7 5 26 26 H 1.09000 * 109.47174 * 299.68344 * 1 2 3 27 27 H 1.08994 * 109.47250 * 59.68452 * 1 2 3 28 28 H 1.08998 * 109.46992 * 179.69013 * 1 2 3 29 29 H 1.09003 * 109.46849 * 180.31576 * 3 2 1 30 30 H 1.08998 * 109.47076 * 300.31233 * 3 2 1 31 31 H 1.09001 * 109.47872 * 60.31464 * 3 2 1 32 32 H 1.08997 * 109.52894 * 56.84676 * 4 2 1 33 33 H 1.09001 * 109.52869 * 177.07894 * 4 2 1 34 34 H 1.08002 * 119.16252 * 179.82077 * 7 5 4 35 35 H 0.97004 * 119.99337 * 298.69384 * 9 8 7 36 36 H 1.08004 * 119.98966 * 359.94764 * 11 10 9 37 37 H 1.08003 * 119.71041 * 180.02562 * 14 12 11 38 38 H 1.07996 * 120.02103 * 180.02562 * 15 14 12 39 39 H 0.96988 * 120.00274 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.47520 * 269.66749 * 25 8 7 41 41 H 1.09000 * 109.47010 * 149.66358 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0451 1.4406 0.0000 4 6 2.0432 -0.7287 -1.2460 5 6 1.6000 -2.1679 -1.1928 6 8 1.4169 -2.7803 -2.2265 7 6 1.3969 -2.8053 0.0359 8 6 1.5918 -2.1640 1.2085 9 7 1.3762 -2.8288 2.3798 10 6 2.4199 -3.0102 3.2775 11 6 3.7132 -2.6517 2.9281 12 6 4.7486 -2.8343 3.8269 13 17 6.3644 -2.3833 3.3807 14 6 4.5067 -3.3758 5.0846 15 6 3.2440 -3.7359 5.4540 16 6 2.1718 -3.5560 4.5598 17 6 0.8631 -3.9212 4.9362 18 1 0.1447 -4.2082 4.1826 19 6 0.4949 -3.9119 6.2863 20 7 1.2657 -3.3321 7.1709 21 14 -1.0968 -4.7271 6.8260 22 1 -1.0583 -6.1694 6.4747 23 1 -1.2549 -4.5801 8.2953 24 1 -2.2425 -4.0803 6.1373 25 6 2.0430 -0.7282 1.2455 26 1 -0.3633 0.5089 0.8928 27 1 -0.3633 0.5187 -0.8871 28 1 -0.3633 -1.0276 -0.0056 29 1 3.1351 1.4367 -0.0057 30 1 1.6790 1.9574 -0.8872 31 1 1.6883 1.9542 0.8928 32 1 1.6359 -0.2546 -2.1390 33 1 3.1320 -0.6833 -1.2721 34 1 1.0764 -3.8366 0.0471 35 1 0.4938 -3.1750 2.5856 36 1 3.9120 -2.2302 1.9538 37 1 5.3258 -3.5117 5.7754 38 1 3.0665 -4.1553 6.4333 39 1 1.0107 -3.3260 8.1066 40 1 3.1321 -0.6899 1.2660 41 1 1.6456 -0.2454 2.1383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169953266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:02 Heat of formation + Delta-G solvation = -32.058249 kcal Electronic energy + Delta-G solvation = -24555.166497 eV Core-core repulsion = 21038.588124 eV Total energy + Delta-G solvation = -3516.578373 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69688 -40.11773 -38.53624 -37.28962 -36.66948 -35.35525 -32.85324 -31.46405 -30.26310 -29.30671 -28.32462 -27.75564 -26.99622 -23.85966 -22.87208 -21.72258 -21.07887 -19.31537 -18.46608 -18.33042 -17.70996 -16.88323 -16.72084 -16.27104 -15.97531 -15.65100 -15.43874 -15.11029 -14.90612 -14.73143 -14.27001 -14.20228 -14.08639 -13.46073 -13.25375 -13.21029 -13.11321 -12.92253 -12.81856 -12.62664 -12.45454 -12.36742 -12.04620 -11.86351 -11.73493 -11.64634 -11.59979 -11.43435 -11.11652 -10.93906 -10.55671 -9.97050 -9.29986 -8.69324 -8.37126 -6.24442 -0.17312 0.79207 1.09568 1.41534 1.48623 1.51252 1.65530 2.02977 2.19457 2.60185 2.71807 3.41925 3.56744 3.67570 3.73126 3.83299 4.18903 4.29496 4.34890 4.47960 4.53930 4.65141 4.67543 4.70901 4.86551 4.89336 4.97283 4.99368 5.05744 5.09848 5.20149 5.22644 5.28116 5.33597 5.37139 5.45227 5.47985 5.49352 5.78773 5.95721 6.08923 6.35181 6.68327 6.70742 6.77608 6.94884 6.98142 8.32395 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.005018 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.137612 B = 5578.722554 C = 7295.157902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 C -0.136 4.136 4 C -0.154 4.154 5 C 0.404 3.596 6 O -0.534 6.534 7 C -0.332 4.332 8 C 0.271 3.729 9 N -0.681 5.681 10 C 0.087 3.913 11 C -0.141 4.141 12 C -0.114 4.114 13 Cl -0.102 7.102 14 C -0.120 4.120 15 C -0.152 4.152 16 C 0.062 3.938 17 C -0.481 4.481 18 H 0.081 0.919 19 C 0.041 3.959 20 N -0.821 5.821 21 Si 0.974 3.026 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.260 1.260 25 C -0.106 4.106 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.412 0.588 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.288 0.712 40 H 0.099 0.901 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 7.922 -6.921 10.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.045 4.045 3 C -0.194 4.194 4 C -0.191 4.191 5 C 0.291 3.709 6 O -0.418 6.418 7 C -0.356 4.356 8 C 0.169 3.831 9 N -0.308 5.308 10 C -0.010 4.010 11 C -0.163 4.163 12 C -0.142 4.142 13 Cl -0.074 7.074 14 C -0.140 4.140 15 C -0.173 4.173 16 C 0.057 3.943 17 C -0.510 4.510 18 H 0.099 0.901 19 C -0.175 4.175 20 N -0.447 5.447 21 Si 0.796 3.204 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.185 1.185 25 C -0.144 4.144 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.252 0.748 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.284 7.779 -7.232 10.625 hybrid contribution -0.856 -0.875 0.852 1.491 sum -1.140 6.904 -6.380 9.469 Atomic orbital electron populations 1.22014 0.94016 1.01650 1.03137 1.20522 0.96116 0.96467 0.91420 1.21820 1.01752 0.92630 1.03149 1.22244 1.04015 0.92401 1.00414 1.20781 0.71919 0.90609 0.87588 1.90558 1.44545 1.68613 1.38065 1.21908 1.18698 1.01325 0.93679 1.20359 0.85716 0.91747 0.85293 1.41115 1.11572 1.60801 1.17300 1.17583 0.86853 1.04675 0.91861 1.20180 0.90254 1.06655 0.99238 1.20066 0.84343 1.13311 0.96484 1.98238 1.23845 1.92180 1.93127 1.20419 0.97158 1.01655 0.94753 1.20814 0.90795 1.04698 1.00979 1.17592 0.94406 0.92574 0.89682 1.19445 0.96897 1.41378 0.93328 0.90057 1.26549 1.01597 0.93107 0.96220 1.69827 1.38402 1.32325 1.04134 0.85342 0.77822 0.79425 0.77773 1.18908 1.19757 1.18459 1.21436 1.02742 0.90122 1.00132 0.91583 0.90811 0.94099 0.91477 0.90649 0.91781 0.87560 0.86775 0.87194 0.74794 0.86014 0.87110 0.86755 0.90096 0.88328 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.10 71.98 0.58 -2.40 16 2 C -0.04 -0.86 0.78 -52.07 -0.04 -0.91 16 3 C -0.14 -1.97 8.50 71.98 0.61 -1.36 16 4 C -0.15 -3.25 4.88 29.91 0.15 -3.10 16 5 C 0.40 12.18 6.06 26.08 0.16 12.34 16 6 O -0.53 -19.92 17.82 -3.83 -0.07 -19.99 16 7 C -0.33 -10.45 8.66 21.94 0.19 -10.26 16 8 C 0.27 8.16 4.24 41.07 0.17 8.33 16 9 N -0.68 -24.12 5.15 -174.58 -0.90 -25.02 16 10 C 0.09 3.61 6.52 38.95 0.25 3.86 16 11 C -0.14 -5.51 8.57 22.39 0.19 -5.32 16 12 C -0.11 -4.58 6.33 22.49 0.14 -4.44 16 13 Cl -0.10 -3.49 28.94 -2.72 -0.08 -3.57 16 14 C -0.12 -5.15 9.74 22.04 0.21 -4.93 16 15 C -0.15 -7.19 8.61 22.46 0.19 -7.00 16 16 C 0.06 2.90 5.57 -21.17 -0.12 2.78 16 17 C -0.48 -22.24 8.53 23.36 0.20 -22.04 16 18 H 0.08 3.52 6.66 -2.91 -0.02 3.50 16 19 C 0.04 1.84 5.22 85.25 0.45 2.28 16 20 N -0.82 -38.78 10.86 21.83 0.24 -38.54 16 21 Si 0.97 34.75 29.58 68.60 2.03 36.78 16 22 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 23 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 24 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 25 C -0.11 -2.61 4.01 29.84 0.12 -2.49 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 0.96 6.13 -2.39 -0.01 0.94 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 3.80 8.06 -2.91 -0.02 3.77 16 35 H 0.41 14.47 7.07 -92.71 -0.66 13.82 16 36 H 0.12 4.28 5.49 -2.91 -0.02 4.26 16 37 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.11 5.70 6.19 -2.91 -0.02 5.68 16 39 H 0.29 12.51 8.30 -92.72 -0.77 11.75 16 40 H 0.10 2.39 6.54 -2.39 -0.02 2.37 16 41 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -54.03 345.60 5.10 -48.94 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.41 Total: 36.06 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 3.46 Total: -34.65 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -0.66 Total: -63.56 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.07 Total: -19.99 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.78 kcal Atomic # 17 Polarization: -3.49 SS G_CDS: -0.08 Total: -3.57 kcal Total: -54.03 5.10 -48.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169953266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.878 kcal (2) G-P(sol) polarization free energy of solvation -54.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds