Wall clock time and date at job start Tue Mar 31 2020 12:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46827 * 2 1 4 4 C 1.53003 * 109.47311 * 240.00286 * 2 1 3 5 5 C 1.50693 * 109.47509 * 119.99523 * 2 1 3 6 6 N 1.30151 * 121.05878 * 0.03359 * 5 2 1 7 7 S 1.69948 * 105.76039 * 179.97438 * 6 5 2 8 8 C 1.72299 * 94.57740 * 359.97438 * 7 6 5 9 9 N 1.38373 * 127.50972 * 179.97438 * 8 7 6 10 10 C 1.39853 * 119.99842 * 8.39378 * 9 8 7 11 11 C 1.38960 * 120.00344 * 36.70428 * 10 9 8 12 12 C 1.37989 * 119.99415 * 179.97438 * 11 10 9 13 13 C 1.38915 * 120.00527 * 359.97438 * 12 11 10 14 14 O 1.35780 * 119.99263 * 180.02562 * 13 12 11 15 15 C 1.34817 * 117.00570 * 354.85137 * 14 13 12 16 16 H 1.08001 * 119.99613 * 354.69756 * 15 14 13 17 17 C 1.38613 * 120.00595 * 174.69110 * 15 14 13 18 18 N 1.31593 * 119.99505 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00217 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46700 * 90.00475 * 19 17 15 21 21 H 1.48503 * 109.47250 * 210.00077 * 19 17 15 22 22 H 1.48495 * 109.47411 * 330.00611 * 19 17 15 23 23 C 1.38909 * 120.01174 * 0.28040 * 13 12 11 24 24 C 1.37992 * 120.00229 * 359.48305 * 23 13 12 25 25 N 1.31255 * 121.06369 * 180.29682 * 5 2 1 26 26 H 1.08991 * 109.47256 * 299.99964 * 1 2 3 27 27 H 1.08994 * 109.46981 * 60.00500 * 1 2 3 28 28 H 1.08999 * 109.46451 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47473 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47176 * 300.00258 * 3 2 1 31 31 H 1.08999 * 109.47471 * 60.00008 * 3 2 1 32 32 H 1.08999 * 109.46965 * 299.99198 * 4 2 1 33 33 H 1.08994 * 109.47019 * 59.99487 * 4 2 1 34 34 H 1.09004 * 109.46999 * 179.97438 * 4 2 1 35 35 H 0.97002 * 120.00692 * 188.39566 * 9 8 7 36 36 H 1.08000 * 120.00449 * 359.97438 * 11 10 9 37 37 H 1.08003 * 119.99834 * 179.97438 * 12 11 10 38 38 H 0.96997 * 119.99331 * 180.02562 * 18 17 15 39 39 H 1.07998 * 119.99931 * 179.74406 * 23 13 12 40 40 H 1.08010 * 120.00028 * 180.23583 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2304 6 7 1.2051 -1.2131 2.1003 7 16 2.1744 -1.9114 3.3091 8 6 3.6636 -1.4782 2.5585 9 7 4.9439 -1.7405 3.0132 10 6 5.1363 -2.5803 4.1149 11 6 4.3177 -3.6886 4.2951 12 6 4.5081 -4.5174 5.3819 13 6 5.5183 -4.2441 6.2954 14 8 5.7057 -5.0601 7.3644 15 6 4.8126 -6.0546 7.5394 16 1 3.9473 -6.1226 6.8966 17 6 5.0047 -6.9900 8.5441 18 7 6.0588 -6.9070 9.3275 19 14 3.7675 -8.3684 8.7860 20 1 4.1632 -9.5389 7.9622 21 1 3.7357 -8.7594 10.2183 22 1 2.4202 -7.9030 8.3699 23 6 6.3334 -3.1333 6.1183 24 6 6.1465 -2.3070 5.0290 25 7 3.3182 -0.8370 1.4617 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4427 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6769 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1301 -0.7208 -1.2495 35 1 5.7080 -1.3419 2.5680 36 1 3.5325 -3.9013 3.5848 37 1 3.8716 -5.3785 5.5223 38 1 6.1934 -7.5618 10.0303 39 1 7.1161 -2.9188 6.8308 40 1 6.7828 -1.4454 4.8893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212604436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:55 Heat of formation + Delta-G solvation = 31.631544 kcal Electronic energy + Delta-G solvation = -23274.064542 eV Core-core repulsion = 19794.584424 eV Total energy + Delta-G solvation = -3479.480119 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59967 -40.99242 -39.24729 -37.33666 -35.94934 -34.22164 -32.56893 -32.01353 -29.57305 -28.16933 -28.06131 -27.31907 -26.16643 -24.20244 -23.18058 -22.31630 -20.42247 -19.89949 -19.41457 -18.91095 -18.19198 -17.59309 -16.77063 -16.33441 -16.29211 -16.10066 -15.60908 -15.37644 -14.94228 -14.80235 -14.66719 -14.33324 -13.86272 -13.59826 -13.48775 -13.24726 -13.08705 -12.95787 -12.84257 -12.65130 -12.57842 -12.44759 -12.31899 -12.12469 -12.05101 -11.88220 -11.79643 -11.29807 -10.92666 -10.71962 -10.60091 -9.97082 -9.76732 -8.55060 -8.48428 -6.14503 -0.47998 -0.08452 0.37480 0.56983 0.81409 1.37650 1.44576 1.53649 1.60313 1.64882 2.17366 2.72428 3.09334 3.12491 3.45207 3.84930 3.88424 3.96679 3.99270 4.07552 4.39291 4.43608 4.50403 4.55442 4.75065 4.78165 4.81620 4.88409 4.98883 4.99405 5.00764 5.04723 5.11600 5.21034 5.27810 5.33165 5.37662 5.44450 5.53391 5.62143 5.99143 6.01528 6.17380 6.70072 6.96746 7.73137 8.73756 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024582 B = 0.002729 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.783030 B =10257.546648 C =11074.661196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.015 3.985 3 C -0.129 4.129 4 C -0.130 4.130 5 C 0.306 3.694 6 N -0.524 5.524 7 S 0.175 5.825 8 C 0.336 3.664 9 N -0.581 5.581 10 C 0.055 3.945 11 C -0.093 4.093 12 C -0.210 4.210 13 C 0.115 3.885 14 O -0.220 6.220 15 C -0.411 4.411 16 H 0.103 0.897 17 C -0.018 4.018 18 N -0.915 5.915 19 Si 1.013 2.987 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.254 1.254 23 C -0.170 4.170 24 C -0.063 4.063 25 N -0.581 5.581 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.434 0.566 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.273 0.727 39 H 0.134 0.866 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 13.569 -18.668 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.010 3.990 3 C -0.187 4.187 4 C -0.188 4.188 5 C 0.016 3.984 6 N -0.356 5.356 7 S 0.311 5.689 8 C -0.043 4.043 9 N -0.213 5.213 10 C -0.039 4.039 11 C -0.114 4.114 12 C -0.229 4.229 13 C 0.063 3.937 14 O -0.126 6.126 15 C -0.487 4.487 16 H 0.121 0.879 17 C -0.216 4.216 18 N -0.552 5.552 19 Si 0.833 3.167 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.177 1.177 23 C -0.190 4.190 24 C -0.084 4.084 25 N -0.315 5.315 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.276 0.724 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.110 13.068 -17.630 23.068 hybrid contribution 0.645 -0.517 -0.084 0.831 sum -6.465 12.551 -17.714 22.652 Atomic orbital electron populations 1.21743 0.91819 1.02275 1.02781 1.19498 0.96650 0.95295 0.87596 1.21804 1.01663 0.92345 1.02918 1.21806 1.01624 0.99671 0.95686 1.23662 0.83466 0.94153 0.97145 1.77529 1.25762 1.25057 1.07236 1.85533 0.94089 1.58211 1.31092 1.25281 0.93815 0.93075 0.92113 1.40771 1.02289 1.47989 1.30245 1.17293 1.02448 0.93208 0.90946 1.20731 1.00067 0.93085 0.97566 1.21016 1.02026 1.03139 0.96766 1.19957 0.94464 0.91672 0.87566 1.83967 1.49776 1.38876 1.39993 1.21791 1.03513 1.05237 1.18207 0.87933 1.26494 0.99748 1.00609 0.94790 1.70177 1.29099 1.36833 1.19137 0.84654 0.77343 0.76491 0.78249 1.18876 1.19709 1.17731 1.20343 1.02633 0.94933 1.01071 1.20708 0.97732 0.99250 0.90692 1.67295 1.17465 1.27891 1.18855 0.93151 0.89176 0.93189 0.92095 0.88859 0.93537 0.93616 0.88834 0.92166 0.72389 0.85542 0.85492 0.91759 0.84860 0.81599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 7.73 71.98 0.56 -1.64 16 2 C 0.02 0.28 0.95 -52.93 -0.05 0.23 16 3 C -0.13 -2.00 8.39 71.98 0.60 -1.39 16 4 C -0.13 -2.06 8.39 71.98 0.60 -1.45 16 5 C 0.31 8.06 6.07 139.39 0.85 8.91 16 6 N -0.52 -15.59 11.01 -60.44 -0.67 -16.26 16 7 S 0.17 5.21 20.57 -56.49 -1.16 4.05 16 8 C 0.34 9.17 8.19 178.83 1.46 10.64 16 9 N -0.58 -13.87 5.47 -188.54 -1.03 -14.90 16 10 C 0.06 1.58 6.24 38.21 0.24 1.82 16 11 C -0.09 -3.08 8.32 22.38 0.19 -2.90 16 12 C -0.21 -8.45 9.13 22.37 0.20 -8.24 16 13 C 0.12 5.19 6.65 22.59 0.15 5.34 16 14 O -0.22 -12.31 9.75 -22.94 -0.22 -12.54 16 15 C -0.41 -22.66 9.44 67.91 0.64 -22.01 16 16 H 0.10 5.18 5.27 -2.91 -0.02 5.16 16 17 C -0.02 -0.98 5.49 84.82 0.47 -0.51 16 18 N -0.91 -53.90 13.68 21.61 0.30 -53.60 16 19 Si 1.01 41.37 29.55 68.60 2.03 43.39 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 23 C -0.17 -6.19 9.98 22.37 0.22 -5.96 16 24 C -0.06 -1.76 9.96 22.38 0.22 -1.54 16 25 N -0.58 -15.54 10.31 -199.95 -2.06 -17.61 16 26 H 0.05 0.98 8.09 -2.39 -0.02 0.96 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 0.98 8.09 -2.39 -0.02 0.96 16 29 H 0.06 1.03 8.08 -2.39 -0.02 1.01 16 30 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.05 8.09 -2.38 -0.02 1.03 16 35 H 0.43 7.89 8.95 -92.71 -0.83 7.06 16 36 H 0.13 3.95 6.16 -2.91 -0.02 3.93 16 37 H 0.13 5.26 5.69 -2.91 -0.02 5.25 16 38 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -67.02 350.16 3.79 -63.23 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.25 Total: 22.95 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 6.36 Total: -18.72 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -3.46 Total: -102.36 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.22 Total: -12.54 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -1.16 Total: 4.05 kcal Total: -67.02 3.79 -63.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.862 kcal (2) G-P(sol) polarization free energy of solvation -67.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds