Wall clock time and date at job start Tue Mar 31 2020 12:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.75363 * 124.29749 * 2 1 4 4 C 1.75742 * 92.19059 * 179.97438 * 3 2 1 5 5 N 1.33855 * 131.29976 * 179.42782 * 4 3 2 6 6 C 1.31263 * 120.99490 * 180.02562 * 5 4 3 7 7 N 1.32135 * 122.15938 * 359.97438 * 6 5 4 8 8 C 1.32264 * 121.22268 * 0.02562 * 7 6 5 9 9 O 1.35451 * 120.51190 * 180.02562 * 8 7 6 10 10 C 1.42903 * 116.99917 * 0.02562 * 9 8 7 11 11 C 1.53514 * 114.17081 * 149.99590 * 10 9 8 12 12 N 1.47483 * 87.92777 * 87.61994 * 11 10 9 13 13 C 1.46903 * 110.99717 * 138.70421 * 12 11 10 14 14 C 1.50694 * 109.47066 * 169.99804 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47480 * 87.83900 * 27.00973 * 12 11 10 23 23 C 1.39823 * 109.61212 * 359.68350 * 4 3 2 24 24 C 1.31871 * 124.29439 * 179.43136 * 2 1 3 25 25 C 1.50698 * 122.59249 * 0.02562 * 24 2 1 26 26 H 1.08997 * 109.47561 * 270.57282 * 1 2 3 27 27 H 1.09008 * 109.46887 * 30.56797 * 1 2 3 28 28 H 1.08995 * 109.47325 * 150.56547 * 1 2 3 29 29 H 1.07999 * 118.91855 * 179.97438 * 6 5 4 30 30 H 1.08997 * 113.25538 * 17.04257 * 10 9 8 31 31 H 1.09000 * 113.47331 * 332.85672 * 11 10 9 32 32 H 1.08997 * 113.47627 * 202.38796 * 11 10 9 33 33 H 1.09007 * 109.47052 * 49.99488 * 13 12 11 34 34 H 1.09003 * 109.46808 * 290.00181 * 13 12 11 35 35 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 36 36 H 1.09004 * 113.47132 * 87.75237 * 22 12 11 37 37 H 1.09000 * 113.47538 * 218.21976 * 22 12 11 38 38 H 1.08994 * 109.47564 * 269.98064 * 25 24 2 39 39 H 1.08999 * 109.47033 * 29.98115 * 25 24 2 40 40 H 1.09006 * 109.47439 * 149.97624 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4951 1.4487 0.0000 4 6 3.9837 0.5146 0.0008 5 7 5.2665 0.8969 -0.0089 6 6 6.2357 0.0116 -0.0065 7 7 6.0005 -1.2886 0.0060 8 6 4.7655 -1.7620 0.0162 9 8 4.5410 -3.0977 0.0294 10 6 5.6891 -3.9485 0.0323 11 6 5.4751 -5.2907 0.7459 12 7 4.9809 -5.8315 -0.5341 13 6 5.4898 -7.1903 -0.7630 14 6 4.7785 -7.8010 -1.9428 15 1 4.0235 -7.2365 -2.4697 16 6 5.0908 -9.0811 -2.3491 17 7 6.0099 -9.7689 -1.7073 18 14 4.2085 -9.8383 -3.8111 19 1 2.9932 -10.5507 -3.3412 20 1 3.8177 -8.7672 -4.7625 21 1 5.1133 -10.7992 -4.4918 22 6 5.8210 -4.8303 -1.2174 23 6 3.6812 -0.8505 0.0083 24 6 2.2500 -1.0894 0.0108 25 6 1.6584 -2.4754 0.0240 26 1 -0.3634 0.0103 1.0276 27 1 -0.3633 0.8849 -0.5227 28 1 -0.3634 -0.8950 -0.5050 29 1 7.2588 0.3572 -0.0149 30 1 6.6062 -3.4328 0.3171 31 1 4.7129 -5.2519 1.5242 32 1 6.4013 -5.7549 1.0848 33 1 5.3120 -7.7991 0.1236 34 1 6.5600 -7.1481 -0.9659 35 1 6.2293 -10.6696 -1.9929 36 1 6.8395 -5.1717 -1.4024 37 1 5.3520 -4.4015 -2.1029 38 1 1.5157 -2.7998 1.0547 39 1 0.6973 -2.4651 -0.4900 40 1 2.3343 -3.1638 -0.4833 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227080766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:35 Heat of formation + Delta-G solvation = 69.257067 kcal Electronic energy + Delta-G solvation = -23892.314213 eV Core-core repulsion = 20414.465659 eV Total energy + Delta-G solvation = -3477.848554 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.42588 -39.82036 -37.43762 -37.36842 -33.24082 -32.88267 -31.80297 -29.39838 -29.37218 -26.84238 -25.68240 -25.40627 -24.49209 -23.37661 -21.79444 -20.31686 -19.53925 -18.84494 -17.60526 -16.84045 -16.44859 -16.16912 -15.91046 -15.37066 -14.98912 -14.65189 -14.43753 -14.12276 -13.81843 -13.71373 -13.40060 -13.24900 -12.93358 -12.84896 -12.56864 -12.10694 -12.00856 -11.98357 -11.65196 -11.40062 -11.07896 -11.05210 -10.86203 -10.69343 -10.53681 -10.32489 -9.83146 -9.71693 -9.52485 -9.30941 -8.92709 -8.46718 -8.11679 -7.93158 -6.07140 -4.08273 0.25590 0.82114 0.89121 1.58579 1.93004 2.71434 3.30285 3.36037 3.40524 3.51241 3.82889 4.11230 4.22465 4.39690 4.49648 4.66327 4.73329 4.85765 5.02916 5.15430 5.23747 5.26102 5.28938 5.41515 5.53060 5.60357 5.71505 5.79491 5.82952 5.92013 6.01415 6.05398 6.13469 6.26238 6.39501 6.52683 6.60623 7.07889 7.16960 7.59072 7.80455 7.83939 8.04582 8.40195 8.99238 9.56055 11.03972 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018259 B = 0.003054 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.116131 B = 9166.204356 C =10156.478419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.193 4.193 3 S 0.161 5.839 4 C 0.111 3.889 5 N -0.521 5.521 6 C 0.352 3.648 7 N -0.582 5.582 8 C 0.426 3.574 9 O -0.250 6.250 10 C 0.043 3.957 11 C -0.001 4.001 12 N -0.457 5.457 13 C 0.156 3.844 14 C -0.504 4.504 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.900 5.900 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.273 1.273 21 H -0.287 1.287 22 C 0.002 3.998 23 C -0.191 4.191 24 C -0.047 4.047 25 C -0.103 4.103 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.206 0.794 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.005 0.995 35 H 0.262 0.738 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 22.011 5.762 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.308 4.308 3 S 0.421 5.579 4 C -0.138 4.138 5 N -0.243 5.243 6 C 0.060 3.940 7 N -0.315 5.315 8 C 0.231 3.769 9 O -0.151 6.151 10 C -0.013 4.013 11 C -0.131 4.131 12 N -0.181 5.181 13 C 0.030 3.970 14 C -0.543 4.543 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.540 5.540 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.198 1.198 21 H -0.213 1.213 22 C -0.127 4.127 23 C -0.205 4.205 24 C -0.058 4.058 25 C -0.161 4.161 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.223 0.777 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.023 0.977 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.142 23.409 5.604 24.842 hybrid contribution 0.489 -2.409 -0.649 2.542 sum -5.653 21.001 4.955 22.305 Atomic orbital electron populations 1.20389 0.86899 1.03561 1.03077 1.23728 1.00424 0.95130 1.11510 1.84081 0.90341 1.06041 1.77443 1.23680 0.97622 0.93471 0.99015 1.68047 0.97619 1.38948 1.19653 1.24662 0.98764 0.82567 0.87985 1.67977 1.21066 1.18655 1.23818 1.20049 0.87660 0.85373 0.83773 1.86374 1.34381 1.10686 1.83632 1.23852 0.87575 0.89561 1.00333 1.24067 1.00705 0.91311 0.96981 1.69102 1.43288 1.04667 1.00997 1.20303 0.94177 0.84552 0.97966 1.21080 1.21132 0.98973 1.13110 0.91843 1.25007 0.95333 0.97108 0.97261 1.69952 1.31797 1.11401 1.40845 0.86471 0.79389 0.78987 0.82430 1.20575 1.19820 1.21277 1.24171 0.98362 0.93234 0.96947 1.19629 0.93946 0.92820 1.14122 1.19341 0.89381 0.97215 0.99905 1.20696 1.01156 0.91127 1.03135 0.90403 0.91147 0.89812 0.77738 0.87408 0.89804 0.90163 0.95147 0.97749 0.92881 0.90173 0.90146 0.90556 0.91028 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 9.98 36.00 0.36 -0.21 16 2 C -0.19 -1.99 6.38 -36.21 -0.23 -2.22 16 3 S 0.16 1.68 23.20 -107.50 -2.49 -0.81 16 4 C 0.11 1.49 7.70 -16.08 -0.12 1.37 16 5 N -0.52 -6.87 10.47 -13.31 -0.14 -7.01 16 6 C 0.35 4.17 12.27 -92.31 -1.13 3.03 16 7 N -0.58 -8.07 8.71 -14.22 -0.12 -8.19 16 8 C 0.43 6.40 7.60 -16.06 -0.12 6.28 16 9 O -0.25 -4.01 8.11 -18.05 -0.15 -4.15 16 10 C 0.04 0.69 4.54 -26.20 -0.12 0.57 16 11 C 0.00 -0.02 7.52 -7.53 -0.06 -0.08 16 12 N -0.46 -9.80 6.32 -246.08 -1.55 -11.36 16 13 C 0.16 4.00 4.57 -4.98 -0.02 3.98 16 14 C -0.50 -14.29 9.39 -34.44 -0.32 -14.62 16 15 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 18 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 C 0.00 0.05 7.55 -7.54 -0.06 -0.01 16 23 C -0.19 -2.70 6.05 -105.28 -0.64 -3.33 16 24 C -0.05 -0.58 5.96 -103.80 -0.62 -1.20 16 25 C -0.10 -1.20 9.45 36.00 0.34 -0.86 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 28 H 0.08 0.54 6.51 -51.93 -0.34 0.21 16 29 H 0.21 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.56 6.90 -51.93 -0.36 1.20 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.31 7.91 -51.93 -0.41 0.90 16 33 H 0.03 0.83 8.08 -51.92 -0.42 0.41 16 34 H 0.00 0.12 7.30 -51.93 -0.38 -0.25 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 36 H 0.08 1.46 7.42 -51.93 -0.39 1.08 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.69 6.48 -51.93 -0.34 0.35 16 40 H 0.09 1.26 6.49 -51.93 -0.34 0.92 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -31.91 347.36 -11.40 -43.31 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.05 Total: -2.01 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.84 Total: -5.85 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -1.08 Total: -52.42 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.15 Total: -4.15 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.49 Total: -0.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.91 -11.40 -43.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227080766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.565 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds