Wall clock time and date at job start Tue Mar 31 2020 12:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.75354 * 124.29611 * 2 1 4 4 C 1.75751 * 92.19041 * 180.02562 * 3 2 1 5 5 N 1.33851 * 131.29199 * 180.02562 * 4 3 2 6 6 C 1.31259 * 120.99722 * 179.97438 * 5 4 3 7 7 N 1.32137 * 122.15004 * 359.97154 * 6 5 4 8 8 C 1.32264 * 121.23118 * 0.02925 * 7 6 5 9 9 O 1.35443 * 120.51486 * 179.97438 * 8 7 6 10 10 C 1.42902 * 117.00043 * 0.02562 * 9 8 7 11 11 H 1.09000 * 110.64515 * 26.85697 * 10 9 8 12 12 C 1.55158 * 110.72296 * 150.00101 * 10 9 8 13 13 C 1.54910 * 101.58302 * 153.86468 * 12 10 9 14 14 N 1.47421 * 104.83090 * 322.99048 * 13 12 10 15 15 C 1.36934 * 125.64568 * 204.09223 * 14 13 12 16 16 H 1.08004 * 120.00035 * 163.19260 * 15 14 13 17 17 C 1.38812 * 120.00404 * 343.18775 * 15 14 13 18 18 N 1.31622 * 119.99728 * 331.97362 * 17 15 14 19 19 Si 1.86799 * 120.00267 * 151.97240 * 17 15 14 20 20 H 1.48506 * 109.46858 * 180.02562 * 19 17 15 21 21 H 1.48494 * 109.47388 * 60.00205 * 19 17 15 22 22 H 1.48501 * 109.46953 * 300.00008 * 19 17 15 23 23 C 1.47021 * 108.70506 * 24.35923 * 14 13 12 24 24 C 1.39817 * 109.61338 * 0.26170 * 4 3 2 25 25 C 1.31879 * 124.29634 * 180.02562 * 2 1 3 26 26 C 1.50700 * 122.59251 * 359.97438 * 25 2 1 27 27 H 1.08995 * 109.47129 * 359.97110 * 1 2 3 28 28 H 1.08995 * 109.47562 * 119.97674 * 1 2 3 29 29 H 1.09007 * 109.46432 * 239.97265 * 1 2 3 30 30 H 1.07996 * 118.92668 * 180.02562 * 6 5 4 31 31 H 1.08994 * 111.00148 * 35.78648 * 12 10 9 32 32 H 1.09000 * 111.00332 * 271.93749 * 12 10 9 33 33 H 1.09000 * 110.36435 * 204.15016 * 13 12 10 34 34 H 1.09005 * 110.36581 * 81.83073 * 13 12 10 35 35 H 0.97004 * 120.00411 * 353.95791 * 18 17 15 36 36 H 1.09002 * 109.88500 * 118.13212 * 23 14 13 37 37 H 1.08999 * 109.87960 * 239.29526 * 23 14 13 38 38 H 1.08993 * 109.47174 * 89.97465 * 26 25 2 39 39 H 1.09001 * 109.47108 * 209.98365 * 26 25 2 40 40 H 1.09001 * 109.47081 * 329.97704 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4950 1.4487 0.0000 4 6 3.9838 0.5146 -0.0008 5 7 5.2665 0.8970 -0.0007 6 6 6.2357 0.0119 -0.0009 7 7 6.0006 -1.2883 -0.0006 8 6 4.7657 -1.7619 -0.0007 9 8 4.5413 -3.0976 -0.0009 10 6 5.6895 -3.9483 -0.0005 11 1 6.5398 -3.4460 0.4608 12 6 5.3822 -5.2851 0.7249 13 6 6.3944 -6.2446 0.0507 14 7 6.4416 -5.8140 -1.3584 15 6 6.8072 -6.5974 -2.4204 16 1 6.5578 -6.2938 -3.4265 17 6 7.4984 -7.7816 -2.2040 18 7 8.2695 -7.9093 -1.1450 19 14 7.3342 -9.1938 -3.4156 20 1 8.1663 -10.3362 -2.9599 21 1 7.7924 -8.7510 -4.7569 22 1 5.9128 -9.6170 -3.4928 23 6 6.0373 -4.4025 -1.4339 24 6 3.6813 -0.8505 -0.0070 25 6 2.2501 -1.0895 -0.0005 26 6 1.6585 -2.4756 -0.0005 27 1 -0.3633 1.0276 0.0005 28 1 -0.3634 -0.5134 -0.8901 29 1 -0.3632 -0.5143 0.8898 30 1 7.2589 0.3577 -0.0004 31 1 4.3570 -5.6043 0.5378 32 1 5.5750 -5.2025 1.7945 33 1 6.0452 -7.2748 0.1212 34 1 7.3772 -6.1440 0.5113 35 1 8.4244 -7.1488 -0.5632 36 1 6.8581 -3.8022 -1.8263 37 1 5.1618 -4.3015 -2.0754 38 1 1.5151 -2.8093 -1.0281 39 1 2.3348 -3.1592 0.5127 40 1 0.6977 -2.4606 0.5140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227082695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:39 Heat of formation + Delta-G solvation = 49.082416 kcal Electronic energy + Delta-G solvation = -24269.272153 eV Core-core repulsion = 20790.548761 eV Total energy + Delta-G solvation = -3478.723392 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.37587 -39.03983 -37.44728 -36.68192 -33.25154 -32.59877 -31.69614 -29.49406 -29.30857 -27.81648 -26.62565 -24.86617 -24.16887 -23.32513 -20.86563 -20.40016 -19.67668 -19.01021 -17.97963 -17.53044 -16.82181 -16.17747 -15.83471 -15.20024 -14.81238 -14.48636 -14.27616 -13.85268 -13.74607 -13.58732 -13.31691 -13.15585 -12.92552 -12.91737 -12.57156 -12.38845 -12.23407 -11.74514 -11.66790 -11.11980 -11.09092 -10.95653 -10.79622 -10.69118 -10.58410 -10.15655 -10.04175 -9.88533 -9.56210 -9.45482 -8.94030 -8.46387 -8.12083 -7.01138 -6.14304 -3.19808 0.26700 0.85725 0.89158 1.56922 1.90661 2.80726 3.48793 3.52612 3.55518 3.70581 3.88790 4.15789 4.22035 4.48439 4.57428 4.75770 4.96856 5.03969 5.08971 5.10368 5.19903 5.30195 5.36431 5.49508 5.50284 5.57123 5.59501 5.70129 5.76017 5.90130 6.01126 6.07689 6.19648 6.26611 6.45024 6.53245 6.66245 6.84197 6.92684 7.22851 7.73457 7.88729 8.43399 8.95994 9.75909 10.28687 11.18169 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.003127 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.660434 B = 8951.268840 C = 9558.838393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.192 4.192 3 S 0.161 5.839 4 C 0.112 3.888 5 N -0.521 5.521 6 C 0.354 3.646 7 N -0.577 5.577 8 C 0.428 3.572 9 O -0.278 6.278 10 C 0.071 3.929 11 H 0.100 0.900 12 C -0.130 4.130 13 C 0.146 3.854 14 N -0.599 5.599 15 C -0.338 4.338 16 H 0.066 0.934 17 C -0.024 4.024 18 N -0.915 5.915 19 Si 1.066 2.934 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.293 1.293 23 C 0.126 3.874 24 C -0.193 4.193 25 C -0.050 4.050 26 C -0.099 4.099 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.207 0.793 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.269 0.731 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.259 17.177 5.565 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.308 4.308 3 S 0.422 5.578 4 C -0.138 4.138 5 N -0.243 5.243 6 C 0.063 3.937 7 N -0.310 5.310 8 C 0.233 3.767 9 O -0.179 6.179 10 C 0.015 3.985 11 H 0.118 0.882 12 C -0.169 4.169 13 C 0.021 3.979 14 N -0.327 5.327 15 C -0.465 4.465 16 H 0.084 0.916 17 C -0.226 4.226 18 N -0.556 5.556 19 Si 0.895 3.105 20 H -0.210 1.210 21 H -0.220 1.220 22 H -0.220 1.220 23 C 0.000 4.000 24 C -0.208 4.208 25 C -0.062 4.062 26 C -0.158 4.158 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.223 0.777 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.531 17.215 5.181 22.501 hybrid contribution -0.373 0.030 0.165 0.409 sum -13.904 17.245 5.346 22.787 Atomic orbital electron populations 1.20331 0.86924 1.02971 1.03352 1.23734 1.00366 0.95208 1.11466 1.84086 0.90353 1.05962 1.77449 1.23674 0.97656 0.93445 0.99020 1.68055 0.97593 1.38952 1.19688 1.24702 0.98789 0.82537 0.87712 1.68032 1.21067 1.18637 1.23276 1.19991 0.87602 0.85315 0.83792 1.86318 1.36306 1.11153 1.84122 1.23788 0.86434 0.89170 0.99141 0.88170 1.23044 1.01819 0.93317 0.98719 1.21551 0.94863 0.96551 0.84947 1.44443 1.79788 1.05248 1.03218 1.19743 1.35502 1.04632 0.86658 0.91643 1.25793 0.94147 1.00491 1.02122 1.70796 1.32004 1.35385 1.17411 0.83518 0.76012 0.76360 0.74623 1.20999 1.21952 1.22029 1.21585 0.97918 0.87858 0.92599 1.19635 0.93879 0.92919 1.14330 1.19283 0.89445 0.97049 1.00382 1.20634 1.00733 0.91270 1.03171 0.91266 0.90186 0.90204 0.77665 0.90410 0.90981 0.92205 0.95101 0.91998 0.94979 0.95004 0.90459 0.90033 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 9.34 36.00 0.34 -0.17 16 2 C -0.19 -1.95 6.38 -36.21 -0.23 -2.18 16 3 S 0.16 1.72 23.19 -107.50 -2.49 -0.77 16 4 C 0.11 1.56 7.69 -16.08 -0.12 1.44 16 5 N -0.52 -7.35 10.47 -13.31 -0.14 -7.49 16 6 C 0.35 4.71 12.27 -92.32 -1.13 3.58 16 7 N -0.58 -9.05 8.75 -14.22 -0.12 -9.17 16 8 C 0.43 6.87 7.60 -16.06 -0.12 6.75 16 9 O -0.28 -4.65 7.80 -18.02 -0.14 -4.79 16 10 C 0.07 1.29 3.25 -24.89 -0.08 1.21 16 11 H 0.10 1.82 6.99 -51.93 -0.36 1.46 16 12 C -0.13 -2.35 6.81 -24.58 -0.17 -2.51 16 13 C 0.15 3.36 5.30 -2.53 -0.01 3.35 16 14 N -0.60 -15.42 3.29 -170.07 -0.56 -15.98 16 15 C -0.34 -9.66 10.02 -15.06 -0.15 -9.81 16 16 H 0.07 1.87 7.97 -52.48 -0.42 1.46 16 17 C -0.02 -0.68 5.09 -17.43 -0.09 -0.77 16 18 N -0.92 -27.51 12.93 55.49 0.72 -26.80 16 19 Si 1.07 25.31 30.00 -169.99 -5.10 20.21 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.13 2.79 7.03 -3.06 -0.02 2.77 16 24 C -0.19 -2.82 6.05 -105.28 -0.64 -3.46 16 25 C -0.05 -0.61 5.96 -103.80 -0.62 -1.23 16 26 C -0.10 -1.07 9.45 36.01 0.34 -0.73 16 27 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.45 7.84 -51.93 -0.41 0.04 16 30 H 0.21 1.92 8.06 -52.49 -0.42 1.49 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.48 7.95 -51.93 -0.41 1.07 16 34 H 0.03 0.75 6.81 -51.93 -0.35 0.39 16 35 H 0.27 8.07 6.06 -40.82 -0.25 7.82 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.00 6.49 -51.93 -0.34 0.66 16 40 H 0.07 0.58 7.20 -51.93 -0.37 0.20 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -32.68 342.25 -10.48 -43.16 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.09 Total: -1.76 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.71 Total: -1.77 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.11 Total: -59.44 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.14 Total: -4.79 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.10 Total: 20.21 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.49 Total: -0.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.68 -10.48 -43.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227082695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.243 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds