Wall clock time and date at job start Tue Mar 31 2020 12:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.75354 * 124.29611 * 2 1 4 4 C 1.75751 * 92.19041 * 180.02562 * 3 2 1 5 5 N 1.33851 * 131.29199 * 180.02562 * 4 3 2 6 6 C 1.31259 * 120.99722 * 179.97438 * 5 4 3 7 7 N 1.32137 * 122.15004 * 359.97154 * 6 5 4 8 8 C 1.32264 * 121.23118 * 0.02925 * 7 6 5 9 9 O 1.35443 * 120.51486 * 179.97438 * 8 7 6 10 10 C 1.42902 * 117.00043 * 0.02562 * 9 8 7 11 11 H 1.09000 * 110.64515 * 26.85697 * 10 9 8 12 12 C 1.55158 * 110.72296 * 150.00101 * 10 9 8 13 13 C 1.54910 * 101.58302 * 153.86468 * 12 10 9 14 14 N 1.47421 * 104.83090 * 322.99048 * 13 12 10 15 15 C 1.36934 * 125.64568 * 204.09223 * 14 13 12 16 16 H 1.08004 * 120.00035 * 163.19260 * 15 14 13 17 17 C 1.38812 * 120.00404 * 343.18775 * 15 14 13 18 18 N 1.31622 * 119.99728 * 331.97362 * 17 15 14 19 19 Si 1.86799 * 120.00267 * 151.97240 * 17 15 14 20 20 H 1.48506 * 109.46858 * 180.02562 * 19 17 15 21 21 H 1.48494 * 109.47388 * 60.00205 * 19 17 15 22 22 H 1.48501 * 109.46953 * 300.00008 * 19 17 15 23 23 C 1.47021 * 108.70506 * 24.35923 * 14 13 12 24 24 C 1.39817 * 109.61338 * 0.26170 * 4 3 2 25 25 C 1.31879 * 124.29634 * 180.02562 * 2 1 3 26 26 C 1.50700 * 122.59251 * 359.97438 * 25 2 1 27 27 H 1.08995 * 109.47129 * 359.97110 * 1 2 3 28 28 H 1.08995 * 109.47562 * 119.97674 * 1 2 3 29 29 H 1.09007 * 109.46432 * 239.97265 * 1 2 3 30 30 H 1.07996 * 118.92668 * 180.02562 * 6 5 4 31 31 H 1.08994 * 111.00148 * 35.78648 * 12 10 9 32 32 H 1.09000 * 111.00332 * 271.93749 * 12 10 9 33 33 H 1.09000 * 110.36435 * 204.15016 * 13 12 10 34 34 H 1.09005 * 110.36581 * 81.83073 * 13 12 10 35 35 H 0.97004 * 120.00411 * 353.95791 * 18 17 15 36 36 H 1.09002 * 109.88500 * 118.13212 * 23 14 13 37 37 H 1.08999 * 109.87960 * 239.29526 * 23 14 13 38 38 H 1.08993 * 109.47174 * 89.97465 * 26 25 2 39 39 H 1.09001 * 109.47108 * 209.98365 * 26 25 2 40 40 H 1.09001 * 109.47081 * 329.97704 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4950 1.4487 0.0000 4 6 3.9838 0.5146 -0.0008 5 7 5.2665 0.8970 -0.0007 6 6 6.2357 0.0119 -0.0009 7 7 6.0006 -1.2883 -0.0006 8 6 4.7657 -1.7619 -0.0007 9 8 4.5413 -3.0976 -0.0009 10 6 5.6895 -3.9483 -0.0005 11 1 6.5398 -3.4460 0.4608 12 6 5.3822 -5.2851 0.7249 13 6 6.3944 -6.2446 0.0507 14 7 6.4416 -5.8140 -1.3584 15 6 6.8072 -6.5974 -2.4204 16 1 6.5578 -6.2938 -3.4265 17 6 7.4984 -7.7816 -2.2040 18 7 8.2695 -7.9093 -1.1450 19 14 7.3342 -9.1938 -3.4156 20 1 8.1663 -10.3362 -2.9599 21 1 7.7924 -8.7510 -4.7569 22 1 5.9128 -9.6170 -3.4928 23 6 6.0373 -4.4025 -1.4339 24 6 3.6813 -0.8505 -0.0070 25 6 2.2501 -1.0895 -0.0005 26 6 1.6585 -2.4756 -0.0005 27 1 -0.3633 1.0276 0.0005 28 1 -0.3634 -0.5134 -0.8901 29 1 -0.3632 -0.5143 0.8898 30 1 7.2589 0.3577 -0.0004 31 1 4.3570 -5.6043 0.5378 32 1 5.5750 -5.2025 1.7945 33 1 6.0452 -7.2748 0.1212 34 1 7.3772 -6.1440 0.5113 35 1 8.4244 -7.1488 -0.5632 36 1 6.8581 -3.8022 -1.8263 37 1 5.1618 -4.3015 -2.0754 38 1 1.5151 -2.8093 -1.0281 39 1 2.3348 -3.1592 0.5127 40 1 0.6977 -2.4606 0.5140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227082695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:38 Heat of formation + Delta-G solvation = 29.393912 kcal Electronic energy + Delta-G solvation = -24270.125911 eV Core-core repulsion = 20790.548761 eV Total energy + Delta-G solvation = -3479.577150 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.47210 -40.42840 -38.36920 -38.32856 -34.71241 -34.15316 -32.71098 -31.16957 -30.27927 -29.45392 -27.62499 -26.49808 -25.60840 -24.34538 -22.39550 -22.23287 -20.63914 -20.14757 -19.71335 -19.02827 -17.74950 -17.40902 -16.91840 -16.70911 -16.22995 -15.87046 -15.54060 -15.29941 -15.15703 -14.84618 -14.75166 -14.46778 -14.17179 -13.76893 -13.58855 -13.45998 -13.32043 -12.94998 -12.76297 -12.71245 -12.64263 -12.55236 -12.20324 -12.07468 -11.92289 -11.89722 -11.66620 -11.63766 -11.09569 -10.60063 -10.56333 -9.89830 -9.13198 -9.03076 -8.39537 -5.42539 -0.72341 -0.27240 -0.02787 0.68205 0.99618 1.53921 1.57729 1.64930 1.84582 2.47063 2.59520 2.80898 3.11879 3.14106 3.30266 3.40993 3.48417 3.52998 3.70941 3.90457 3.99260 4.20037 4.28900 4.33843 4.42616 4.62249 4.64957 4.69171 4.70738 4.76968 4.79597 4.83732 4.93292 4.99209 5.10250 5.15171 5.17138 5.44887 5.55940 5.58000 5.91187 6.24186 6.79727 6.81539 7.61023 8.16528 8.92273 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.003127 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.660434 B = 8951.268840 C = 9558.838393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.173 4.173 3 S 0.202 5.798 4 C 0.082 3.918 5 N -0.526 5.526 6 C 0.346 3.654 7 N -0.596 5.596 8 C 0.404 3.596 9 O -0.276 6.276 10 C 0.091 3.909 11 H 0.101 0.899 12 C -0.112 4.112 13 C 0.148 3.852 14 N -0.620 5.620 15 C -0.355 4.355 16 H 0.057 0.943 17 C -0.071 4.071 18 N -0.939 5.939 19 Si 1.118 2.882 20 H -0.287 1.287 21 H -0.276 1.276 22 H -0.278 1.278 23 C 0.128 3.872 24 C -0.202 4.202 25 C -0.080 4.080 26 C -0.094 4.094 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.239 0.761 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.036 0.964 34 H 0.016 0.984 35 H 0.257 0.743 36 H 0.017 0.983 37 H 0.026 0.974 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.662 18.427 5.844 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.289 4.289 3 S 0.463 5.537 4 C -0.167 4.167 5 N -0.247 5.247 6 C 0.055 3.945 7 N -0.329 5.329 8 C 0.210 3.790 9 O -0.178 6.178 10 C 0.034 3.966 11 H 0.119 0.881 12 C -0.150 4.150 13 C 0.023 3.977 14 N -0.349 5.349 15 C -0.483 4.483 16 H 0.075 0.925 17 C -0.268 4.268 18 N -0.581 5.581 19 Si 0.942 3.058 20 H -0.213 1.213 21 H -0.201 1.201 22 H -0.204 1.204 23 C 0.002 3.998 24 C -0.217 4.217 25 C -0.091 4.091 26 C -0.153 4.153 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.255 0.745 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.055 0.945 34 H 0.034 0.966 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.953 18.525 5.466 25.050 hybrid contribution 0.283 -0.153 0.066 0.328 sum -15.670 18.372 5.532 24.772 Atomic orbital electron populations 1.20552 0.84023 1.04605 1.04724 1.24273 1.02113 0.94318 1.08177 1.83961 0.88232 1.05396 1.76099 1.24230 0.98652 0.94232 0.99584 1.68127 0.97970 1.39108 1.19539 1.25348 1.00116 0.81793 0.87257 1.68019 1.21238 1.19891 1.23767 1.20225 0.88557 0.84980 0.85239 1.86306 1.34951 1.11749 1.84817 1.23356 0.87306 0.89706 0.96229 0.88063 1.22904 1.00645 0.91424 1.00018 1.21482 0.95489 0.96610 0.84099 1.44697 1.79571 1.06794 1.03800 1.19993 1.35370 1.05586 0.87360 0.92507 1.27245 0.93467 1.02860 1.03207 1.70907 1.33776 1.34945 1.18457 0.82830 0.76615 0.73181 0.73217 1.21316 1.20133 1.20430 1.21588 0.96858 0.86056 0.95294 1.19924 0.94865 0.92879 1.14038 1.19430 0.88516 0.98381 1.02785 1.20610 1.01518 0.90097 1.03071 0.89562 0.88927 0.88477 0.74529 0.89479 0.87623 0.94541 0.96628 0.93305 0.96521 0.95633 0.90841 0.91894 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.34 71.23 0.66 -0.08 16 2 C -0.17 -3.03 6.38 24.86 0.16 -2.88 16 3 S 0.20 3.86 23.19 -56.49 -1.31 2.55 16 4 C 0.08 2.22 7.69 84.77 0.65 2.87 16 5 N -0.53 -14.47 10.47 -196.01 -2.05 -16.52 16 6 C 0.35 9.07 12.27 180.94 2.22 11.29 16 7 N -0.60 -18.78 8.75 -311.89 -2.73 -21.51 16 8 C 0.40 13.03 7.60 85.47 0.65 13.67 16 9 O -0.28 -9.25 7.80 -87.40 -0.68 -9.93 16 10 C 0.09 3.33 3.25 31.79 0.10 3.43 16 11 H 0.10 3.71 6.99 -2.39 -0.02 3.70 16 12 C -0.11 -3.96 6.81 31.99 0.22 -3.74 16 13 C 0.15 6.99 5.30 86.86 0.46 7.45 16 14 N -0.62 -32.93 3.29 -691.97 -2.28 -35.20 16 15 C -0.36 -20.82 10.02 84.03 0.84 -19.98 16 16 H 0.06 3.34 7.97 -2.91 -0.02 3.32 16 17 C -0.07 -4.14 5.09 84.86 0.43 -3.71 16 18 N -0.94 -57.83 12.93 21.65 0.28 -57.55 16 19 Si 1.12 51.41 30.00 68.60 2.06 53.47 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 23 C 0.13 5.80 7.03 86.73 0.61 6.41 16 24 C -0.20 -5.79 6.05 -20.29 -0.12 -5.91 16 25 C -0.08 -1.82 5.96 -18.93 -0.11 -1.94 16 26 C -0.09 -1.87 9.45 71.24 0.67 -1.20 16 27 H 0.09 0.54 8.13 -2.39 -0.02 0.52 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.65 7.84 -2.38 -0.02 0.64 16 30 H 0.24 4.21 8.06 -2.91 -0.02 4.19 16 31 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.04 1.86 7.95 -2.39 -0.02 1.84 16 34 H 0.02 0.79 6.81 -2.38 -0.02 0.78 16 35 H 0.26 16.00 6.06 -92.71 -0.56 15.44 16 36 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.03 1.19 8.05 -2.39 -0.02 1.17 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.49 6.49 -2.39 -0.02 1.47 16 40 H 0.10 1.32 7.20 -2.39 -0.02 1.31 16 Total: -1.00 -72.76 342.25 2.01 -70.75 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.27 Total: 8.26 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 7.45 Total: 5.70 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -6.78 Total: -130.79 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.68 Total: -9.93 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.06 Total: 53.47 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.31 Total: 2.55 kcal Total: -72.76 2.01 -70.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227082695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.147 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds