Wall clock time and date at job start Tue Mar 31 2020 12:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46772 * 2 1 4 4 C 1.31873 * 124.28810 * 90.00588 * 3 2 1 5 5 C 1.45111 * 114.81059 * 180.02562 * 4 3 2 6 6 C 1.39849 * 111.97038 * 359.97438 * 5 4 3 7 7 N 1.33828 * 119.08868 * 180.02562 * 6 5 4 8 8 C 1.31282 * 120.99524 * 0.02562 * 7 6 5 9 9 N 1.32106 * 122.15815 * 359.71933 * 8 7 6 10 10 C 1.32290 * 121.22297 * 0.56960 * 9 8 7 11 11 O 1.35449 * 120.51313 * 179.71561 * 10 9 8 12 12 C 1.42906 * 117.00151 * 359.72903 * 11 10 9 13 13 H 1.09000 * 110.88001 * 333.87595 * 12 11 10 14 14 C 1.55161 * 111.00283 * 209.99941 * 12 11 10 15 15 C 1.54323 * 102.93603 * 206.38144 * 14 12 11 16 16 N 1.47018 * 107.27391 * 22.19349 * 15 14 12 17 17 C 1.36939 * 125.64487 * 181.02127 * 16 15 14 18 18 H 1.08000 * 119.99581 * 189.83269 * 17 16 15 19 19 C 1.38805 * 120.00356 * 9.82904 * 17 16 15 20 20 N 1.31621 * 120.00209 * 208.93508 * 19 17 16 21 21 Si 1.86800 * 120.00028 * 28.93562 * 19 17 16 22 22 H 1.48503 * 109.47084 * 275.30206 * 21 19 17 23 23 H 1.48493 * 109.47453 * 155.29993 * 21 19 17 24 24 H 1.48503 * 109.46914 * 35.29834 * 21 19 17 25 25 C 1.47418 * 108.70509 * 1.28535 * 16 15 14 26 26 S 1.75347 * 124.29351 * 270.02259 * 3 2 1 27 27 H 1.09003 * 109.47170 * 299.99796 * 1 2 3 28 28 H 1.08999 * 109.47566 * 60.00147 * 1 2 3 29 29 H 1.09006 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46809 * 240.00445 * 2 1 3 31 31 H 1.08999 * 109.46823 * 119.99867 * 2 1 3 32 32 H 1.08002 * 122.59506 * 359.97438 * 4 3 2 33 33 H 1.07997 * 118.92015 * 180.02562 * 8 7 6 34 34 H 1.09002 * 110.71740 * 88.02056 * 14 12 11 35 35 H 1.08996 * 110.71703 * 324.74653 * 14 12 11 36 36 H 1.09002 * 109.88212 * 262.76856 * 15 14 12 37 37 H 1.09000 * 109.87848 * 141.61041 * 15 14 12 38 38 H 0.96996 * 119.99849 * 4.81527 * 20 19 17 39 39 H 1.09002 * 110.36921 * 94.48294 * 25 16 15 40 40 H 1.09000 * 110.37005 * 216.80481 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2799 2.1213 1.0896 5 6 2.7564 3.4709 0.8506 6 6 2.8572 3.7562 -0.5148 7 7 3.2846 4.9654 -0.8970 8 6 3.6081 5.8791 -0.0116 9 7 3.5251 5.6591 1.2884 10 6 3.1186 4.4927 1.7619 11 8 3.0444 4.2808 3.0976 12 6 3.4275 5.3632 3.9485 13 1 4.1356 6.0213 3.4449 14 6 4.0109 4.8386 5.2871 15 6 3.7214 5.9952 6.2670 16 7 2.6134 6.7790 5.7019 17 6 2.0671 7.9047 6.2583 18 1 1.1560 8.3196 5.8532 19 6 2.6843 8.5125 7.3429 20 7 1.9655 9.1818 8.2191 21 14 4.5350 8.3805 7.5591 22 1 4.8626 7.1113 8.2572 23 1 5.0225 9.5286 8.3647 24 1 5.1913 8.3963 6.2270 25 6 2.1837 6.1489 4.4403 26 16 2.3610 2.3525 -1.4487 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1383 1.7216 2.0829 33 1 3.9487 6.8439 -0.3573 34 1 5.0838 4.6670 5.1993 35 1 3.4982 3.9295 5.6012 36 1 4.6058 6.6240 6.3699 37 1 3.4339 5.5943 7.2390 38 1 0.9984 9.1922 8.1463 39 1 1.3500 5.4701 4.6200 40 1 1.9039 6.9101 3.7120 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227100350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:17 Heat of formation + Delta-G solvation = 58.263111 kcal Electronic energy + Delta-G solvation = -23878.423285 eV Core-core repulsion = 20400.097998 eV Total energy + Delta-G solvation = -3478.325287 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.35766 -39.09095 -37.16941 -36.81197 -33.78056 -32.99176 -32.37028 -29.83146 -29.13324 -28.12542 -25.42592 -24.92310 -23.72176 -22.97625 -21.15968 -20.91022 -20.45563 -19.11328 -18.08850 -17.39970 -16.65934 -16.30125 -15.93463 -15.44748 -15.26480 -14.67151 -14.41654 -14.24669 -14.08475 -13.76251 -13.40867 -13.34627 -13.14295 -12.93073 -12.57641 -12.00843 -11.98304 -11.90508 -11.69238 -11.39139 -11.16390 -11.08891 -11.07563 -10.98088 -10.60282 -10.25708 -9.99434 -9.64625 -9.48182 -9.22029 -8.99256 -8.49568 -8.28827 -7.15538 -6.41369 -3.23193 0.22343 0.82390 0.83463 1.52385 1.90193 2.74574 3.40462 3.51077 3.53187 3.68436 3.84917 4.10591 4.15826 4.50916 4.59603 4.60250 4.72795 4.87757 4.88748 4.97659 5.12191 5.23511 5.32673 5.39225 5.39639 5.40616 5.51312 5.61541 5.69692 5.81098 5.83821 5.93514 5.96662 6.05775 6.35927 6.41913 6.46650 6.61877 6.67968 7.14807 7.62649 7.86152 8.29257 8.96825 9.51443 10.17271 11.07971 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.003059 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.553100 B = 9150.887956 C = 9713.894735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.052 4.052 3 C -0.179 4.179 4 C -0.081 4.081 5 C -0.197 4.197 6 C 0.111 3.889 7 N -0.521 5.521 8 C 0.356 3.644 9 N -0.576 5.576 10 C 0.427 3.573 11 O -0.282 6.282 12 C 0.064 3.936 13 H 0.106 0.894 14 C -0.124 4.124 15 C 0.122 3.878 16 N -0.603 5.603 17 C -0.334 4.334 18 H 0.079 0.921 19 C -0.011 4.011 20 N -0.910 5.910 21 Si 1.052 2.948 22 H -0.292 1.292 23 H -0.297 1.297 24 H -0.292 1.292 25 C 0.127 3.873 26 S 0.165 5.835 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.153 0.847 33 H 0.208 0.792 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.032 0.968 37 H 0.048 0.952 38 H 0.265 0.735 39 H 0.033 0.967 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.818 -18.744 -19.077 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.091 4.091 3 C -0.294 4.294 4 C -0.110 4.110 5 C -0.211 4.211 6 C -0.139 4.139 7 N -0.243 5.243 8 C 0.064 3.936 9 N -0.308 5.308 10 C 0.232 3.768 11 O -0.182 6.182 12 C 0.007 3.993 13 H 0.124 0.876 14 C -0.162 4.162 15 C -0.003 4.003 16 N -0.332 5.332 17 C -0.460 4.460 18 H 0.097 0.903 19 C -0.212 4.212 20 N -0.549 5.549 21 Si 0.884 3.116 22 H -0.220 1.220 23 H -0.225 1.225 24 H -0.220 1.220 25 C 0.001 3.999 26 S 0.424 5.576 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.171 0.829 33 H 0.224 0.776 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.099 -17.888 -19.734 26.815 hybrid contribution -1.250 -0.527 0.805 1.578 sum 1.848 -18.415 -18.929 26.474 Atomic orbital electron populations 1.21818 0.93991 1.02239 1.02805 1.20152 0.96437 0.88851 1.03668 1.24012 1.08287 1.01381 0.95758 1.20551 0.99645 0.90800 1.00022 1.19712 1.11988 0.96606 0.92840 1.23735 0.98867 0.97862 0.93420 1.68056 1.17177 1.00047 1.38970 1.24721 0.88849 0.97536 0.82485 1.68045 1.23002 1.21100 1.18669 1.19980 0.84376 0.87245 0.85179 1.86243 1.79079 1.41617 1.11302 1.24161 0.99478 0.86854 0.88830 0.87604 1.22752 1.00705 0.99683 0.93089 1.21644 0.91736 0.90975 0.95975 1.44681 1.39017 1.28781 1.20720 1.20020 1.07549 1.04466 1.13979 0.90309 1.25774 1.06052 0.96874 0.92525 1.70894 1.07588 1.45016 1.31382 0.84000 0.77277 0.75252 0.75024 1.21997 1.22491 1.21951 1.21918 0.93536 0.95227 0.89252 1.84138 1.67486 1.00099 1.05924 0.92007 0.92312 0.91793 0.90435 0.89502 0.82936 0.77610 0.90587 0.90080 0.95080 0.93430 0.92484 0.94899 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.54 16 2 C -0.05 -0.33 6.37 -27.88 -0.18 -0.50 16 3 C -0.18 -1.65 5.63 -36.21 -0.20 -1.85 16 4 C -0.08 -0.89 10.16 -38.76 -0.39 -1.29 16 5 C -0.20 -2.70 6.09 -105.28 -0.64 -3.34 16 6 C 0.11 1.47 7.70 -16.08 -0.12 1.35 16 7 N -0.52 -7.09 10.47 -13.31 -0.14 -7.23 16 8 C 0.36 4.61 12.27 -92.32 -1.13 3.47 16 9 N -0.58 -8.81 8.75 -14.22 -0.12 -8.94 16 10 C 0.43 6.60 7.60 -16.07 -0.12 6.48 16 11 O -0.28 -4.55 9.91 -18.04 -0.18 -4.73 16 12 C 0.06 1.13 3.38 -24.46 -0.08 1.04 16 13 H 0.11 1.93 6.99 -51.93 -0.36 1.56 16 14 C -0.12 -2.11 6.68 -24.89 -0.17 -2.28 16 15 C 0.12 2.65 4.99 -3.07 -0.02 2.63 16 16 N -0.60 -15.03 3.28 -169.94 -0.56 -15.59 16 17 C -0.33 -9.62 10.41 -15.06 -0.16 -9.78 16 18 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 19 C -0.01 -0.32 5.41 -17.43 -0.09 -0.41 16 20 N -0.91 -28.33 13.70 55.49 0.76 -27.57 16 21 Si 1.05 26.45 24.74 -169.99 -4.21 22.25 16 22 H -0.29 -6.85 6.74 56.52 0.38 -6.47 16 23 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 24 H -0.29 -7.05 6.87 56.52 0.39 -6.66 16 25 C 0.13 2.69 6.98 -2.41 -0.02 2.67 16 26 S 0.16 1.64 23.19 -107.50 -2.49 -0.85 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.21 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.03 0.71 3.71 -51.93 -0.19 0.52 16 37 H 0.05 1.06 8.01 -51.93 -0.42 0.65 16 38 H 0.27 8.16 8.73 -40.82 -0.36 7.81 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -32.80 343.18 -9.96 -42.75 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -5.23 Total: -2.92 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.96 Total: -2.34 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.06 Total: -59.34 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.18 Total: -4.73 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -4.21 Total: 22.25 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.49 Total: -0.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.80 -9.96 -42.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227100350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.018 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds