Wall clock time and date at job start Tue Mar 31 2020 12:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46767 * 2 1 4 4 C 1.50700 * 109.46893 * 184.69872 * 3 2 1 5 5 C 1.39245 * 119.50006 * 266.47282 * 4 3 2 6 6 C 1.36167 * 120.94186 * 180.32656 * 5 4 3 7 7 C 1.40454 * 119.72473 * 359.63650 * 6 5 4 8 8 C 1.40779 * 121.35877 * 180.02562 * 7 6 5 9 9 C 1.36565 * 118.14915 * 179.97438 * 8 7 6 10 10 C 1.39337 * 119.92667 * 359.97438 * 9 8 7 11 11 N 1.31083 * 121.72775 * 359.97438 * 10 9 8 12 12 C 1.33593 * 121.33452 * 0.02562 * 11 10 9 13 13 C 1.36569 * 119.49970 * 86.10940 * 4 3 2 14 14 O 1.35849 * 120.17766 * 0.02562 * 13 4 3 15 15 C 1.42901 * 117.00013 * 106.78463 * 14 13 4 16 16 H 1.08997 * 109.47048 * 36.14707 * 15 14 13 17 17 C 1.50695 * 109.47432 * 156.15273 * 15 14 13 18 18 H 1.08008 * 119.99653 * 359.97438 * 17 15 14 19 19 C 1.37871 * 120.00313 * 180.02562 * 17 15 14 20 20 N 1.31514 * 119.99804 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 120.00127 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47307 * 89.99539 * 21 19 17 23 23 H 1.48503 * 109.47032 * 209.99467 * 21 19 17 24 24 H 1.48501 * 109.47162 * 329.99447 * 21 19 17 25 25 C 1.52998 * 109.46841 * 276.15298 * 15 14 13 26 26 Cl 1.80305 * 109.47269 * 67.08029 * 25 15 14 27 27 H 1.08994 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47139 * 300.00325 * 1 2 3 29 29 H 1.08996 * 109.46792 * 60.00000 * 1 2 3 30 30 H 1.08995 * 109.47221 * 239.99904 * 2 1 3 31 31 H 1.08996 * 109.46701 * 119.99452 * 2 1 3 32 32 H 1.08995 * 109.47749 * 64.69655 * 3 2 1 33 33 H 1.09007 * 109.46884 * 304.69186 * 3 2 1 34 34 H 1.07998 * 119.52403 * 359.94249 * 5 4 3 35 35 H 1.07995 * 120.13664 * 179.65893 * 6 5 4 36 36 H 1.08001 * 120.92083 * 359.97438 * 8 7 6 37 37 H 1.08012 * 120.03745 * 179.97438 * 9 8 7 38 38 H 1.07995 * 119.13335 * 180.02562 * 10 9 8 39 39 H 0.97008 * 119.99899 * 180.02562 * 20 19 17 40 40 H 1.09006 * 109.47069 * 307.07826 * 25 15 14 41 41 H 1.08999 * 109.47027 * 187.07684 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5425 1.4442 -0.1164 5 6 4.3196 1.4864 1.0383 6 6 5.6794 1.4957 0.9670 7 6 6.3114 1.4546 -0.2866 8 6 7.7146 1.4621 -0.4002 9 6 8.2599 1.4198 -1.6516 10 6 7.4303 1.3703 -2.7700 11 7 6.1242 1.3625 -2.6597 12 6 5.5276 1.4022 -1.4650 13 6 4.1213 1.3966 -1.3524 14 8 3.3471 1.3488 -2.4677 15 6 3.2748 2.5367 -3.2587 16 1 4.2433 3.0366 -3.2528 17 6 2.9042 2.1760 -4.6741 18 1 2.7406 1.1428 -4.9429 19 6 2.7749 3.1648 -5.6262 20 7 2.9746 4.4228 -5.2991 21 14 2.3162 2.7175 -7.3809 22 1 0.8382 2.7307 -7.5249 23 1 2.9134 3.7049 -8.3157 24 1 2.8323 1.3614 -7.6972 25 6 2.2141 3.4732 -2.6766 26 17 2.7585 4.0699 -1.0646 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.7470 1.9316 0.9290 33 1 1.6096 1.9800 -0.8450 34 1 3.8369 1.5185 2.0038 35 1 6.2694 1.5342 1.8707 36 1 8.3423 1.5003 0.4778 37 1 9.3330 1.4247 -1.7742 38 1 7.8752 1.3368 -3.7535 39 1 2.8833 5.1185 -5.9689 40 1 1.2739 2.9329 -2.5656 41 1 2.0695 4.3200 -3.3476 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231325785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:20 Heat of formation + Delta-G solvation = -9.028795 kcal Electronic energy + Delta-G solvation = -25288.955380 eV Core-core repulsion = 21773.375639 eV Total energy + Delta-G solvation = -3515.579741 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59186 -38.14533 -36.51526 -34.78293 -34.29090 -33.37193 -32.39288 -30.40526 -29.69531 -28.51377 -26.22165 -25.22861 -23.70385 -22.70303 -21.96368 -20.88706 -20.46304 -17.83858 -16.96624 -16.70826 -16.53079 -15.66758 -14.84405 -14.68912 -14.29088 -14.23034 -13.97356 -13.56166 -13.38685 -13.30337 -12.85235 -12.63448 -12.49723 -12.18456 -12.05727 -11.75842 -11.57062 -11.31676 -11.23502 -11.04270 -10.93239 -10.69942 -10.64735 -10.37450 -10.20857 -9.98500 -9.81342 -9.41785 -9.27505 -8.91329 -8.78518 -8.45617 -8.26618 -7.31386 -6.28211 -4.33282 0.80662 1.19352 2.35908 3.20442 3.27629 3.28397 3.33095 3.48664 4.19342 4.42454 4.66897 4.76160 4.98775 5.07084 5.07674 5.15723 5.28673 5.33751 5.38973 5.49946 5.51093 5.71266 5.78494 5.90543 6.05866 6.13400 6.19928 6.21904 6.26035 6.28593 6.34279 6.43172 6.45980 6.54378 6.66633 6.76115 6.91173 6.95051 6.98935 7.21248 7.39041 7.68818 7.96315 8.36407 8.57036 8.87926 9.32814 10.79034 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.006502 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.890538 B = 4305.368851 C = 5811.843119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.073 4.073 4 C -0.088 4.088 5 C -0.086 4.086 6 C -0.132 4.132 7 C -0.092 4.092 8 C -0.072 4.072 9 C -0.176 4.176 10 C 0.112 3.888 11 N -0.434 5.434 12 C 0.099 3.901 13 C 0.165 3.835 14 O -0.321 6.321 15 C 0.231 3.769 16 H 0.043 0.957 17 C -0.504 4.504 18 H 0.074 0.926 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.912 3.088 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.043 4.043 26 Cl -0.243 7.243 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.154 0.846 39 H 0.269 0.731 40 H 0.072 0.928 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 -4.801 11.068 12.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.110 4.110 4 C -0.091 4.091 5 C -0.105 4.105 6 C -0.151 4.151 7 C -0.094 4.094 8 C -0.098 4.098 9 C -0.196 4.196 10 C -0.062 4.062 11 N -0.141 5.141 12 C -0.023 4.023 13 C 0.119 3.881 14 O -0.237 6.237 15 C 0.177 3.823 16 H 0.061 0.939 17 C -0.542 4.542 18 H 0.092 0.908 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.739 3.261 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.105 4.105 26 Cl -0.217 7.217 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.171 0.829 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.244 -4.743 10.301 11.795 hybrid contribution 0.607 0.253 -0.046 0.659 sum 3.850 -4.489 10.255 11.838 Atomic orbital electron populations 1.21749 0.96082 1.01061 1.01720 1.21516 0.95410 0.96752 1.01886 1.20685 0.90381 0.96777 1.03123 1.19595 0.96727 1.01148 0.91608 1.20598 0.93422 0.98854 0.97583 1.20714 0.94768 1.03881 0.95695 1.18691 0.93966 1.02375 0.94344 1.21309 0.93483 0.97087 0.97920 1.21833 1.01114 1.02883 0.93733 1.22950 0.89183 0.95225 0.98808 1.68130 1.11441 1.09127 1.25383 1.19432 0.94331 1.00165 0.88411 1.18152 0.86730 0.95327 0.87902 1.85986 1.65193 1.38623 1.33935 1.20273 0.94709 0.79310 0.87991 0.93915 1.20951 1.47743 0.94770 0.90760 0.90779 1.24941 0.94765 0.94700 0.99681 1.69821 1.48663 0.99620 1.34940 0.86246 0.78585 0.78579 0.82672 1.20363 1.20951 1.19442 1.25984 1.00534 1.02998 0.81002 1.98633 1.92546 1.91163 1.39369 0.93197 0.93213 0.92412 0.91391 0.92837 0.91935 0.89359 0.86035 0.85950 0.85055 0.85191 0.82878 0.92144 0.90951 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.74 5.92 -26.73 -0.16 -1.90 16 3 C -0.07 -1.19 3.90 -27.88 -0.11 -1.30 16 4 C -0.09 -1.58 3.50 -104.85 -0.37 -1.95 16 5 C -0.09 -1.31 9.57 -39.95 -0.38 -1.70 16 6 C -0.13 -1.94 9.77 -39.49 -0.39 -2.32 16 7 C -0.09 -1.56 5.74 -106.81 -0.61 -2.17 16 8 C -0.07 -1.00 9.90 -39.23 -0.39 -1.39 16 9 C -0.18 -2.38 10.03 -39.78 -0.40 -2.78 16 10 C 0.11 1.86 11.15 -17.46 -0.19 1.67 16 11 N -0.43 -9.23 9.41 -10.88 -0.10 -9.33 16 12 C 0.10 2.04 6.36 -84.73 -0.54 1.50 16 13 C 0.17 3.49 4.68 -39.11 -0.18 3.31 16 14 O -0.32 -7.66 8.64 -19.26 -0.17 -7.83 16 15 C 0.23 5.86 2.20 -27.89 -0.06 5.80 16 16 H 0.04 1.22 7.24 -51.93 -0.38 0.84 16 17 C -0.50 -13.65 8.88 -34.44 -0.31 -13.96 16 18 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 19 C 0.06 1.62 5.28 -17.82 -0.09 1.52 16 20 N -0.89 -24.20 11.29 55.43 0.63 -23.57 16 21 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C -0.04 -1.00 5.41 37.16 0.20 -0.79 16 26 Cl -0.24 -5.07 23.65 -51.86 -1.23 -6.29 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 33 H 0.09 1.65 4.28 -51.93 -0.22 1.43 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.15 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.07 1.61 7.26 -51.93 -0.38 1.23 16 41 H 0.13 3.31 5.91 -51.93 -0.31 3.01 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -29.48 345.92 -9.76 -39.24 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.47 Total: 4.93 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -3.61 Total: -18.00 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.52 Total: -32.91 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.17 Total: -7.83 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 17 Polarization: -5.07 SS G_CDS: -1.23 Total: -6.29 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.48 -9.76 -39.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231325785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.216 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds