Wall clock time and date at job start Tue Mar 31 2020 12:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 C 1.50706 * 109.46880 * 119.99850 * 2 1 3 5 5 N 1.30131 * 121.06260 * 300.02740 * 4 2 1 6 6 S 1.69947 * 105.76198 * 179.97438 * 5 4 2 7 7 C 1.72298 * 94.57353 * 359.97438 * 6 5 4 8 8 N 1.38322 * 127.50214 * 179.97438 * 7 6 5 9 9 C 1.46507 * 119.99823 * 0.02865 * 8 7 6 10 10 C 1.50705 * 109.46693 * 179.97438 * 9 8 7 11 11 C 1.38325 * 119.96442 * 269.71764 * 10 9 8 12 12 C 1.38275 * 120.13734 * 179.76869 * 11 10 9 13 13 C 1.38125 * 120.06954 * 0.51338 * 12 11 10 14 14 C 1.38861 * 119.92956 * 359.74766 * 13 12 11 15 15 O 1.35749 * 120.07209 * 179.97438 * 14 13 12 16 16 C 1.34838 * 116.99699 * 354.48412 * 15 14 13 17 17 H 1.07995 * 120.00084 * 5.05995 * 16 15 14 18 18 C 1.38656 * 119.99803 * 185.05558 * 16 15 14 19 19 N 1.31553 * 120.00022 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00154 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47226 * 89.99369 * 20 18 16 22 22 H 1.48501 * 109.47101 * 209.99872 * 20 18 16 23 23 H 1.48503 * 109.47017 * 329.99793 * 20 18 16 24 24 C 1.38078 * 119.96466 * 90.00144 * 10 9 8 25 25 N 1.31284 * 121.06197 * 119.74013 * 4 2 1 26 26 H 1.08996 * 109.46992 * 59.99896 * 1 2 3 27 27 H 1.09004 * 109.47101 * 300.00204 * 1 2 3 28 28 H 1.08998 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47014 * 239.99970 * 2 1 3 30 30 H 1.09004 * 109.46865 * 59.99648 * 3 2 1 31 31 H 1.09003 * 109.46881 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46839 * 300.00205 * 3 2 1 33 33 H 0.97002 * 120.00529 * 180.02562 * 8 7 6 34 34 H 1.08992 * 109.46762 * 299.99541 * 9 8 7 35 35 H 1.08996 * 109.47177 * 60.00172 * 9 8 7 36 36 H 1.07998 * 119.92818 * 0.02562 * 11 10 9 37 37 H 1.07994 * 119.96794 * 180.25641 * 12 11 10 38 38 H 1.07994 * 120.04090 * 179.76177 * 13 12 11 39 39 H 0.96997 * 120.00519 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.03574 * 359.95674 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7302 -0.2841 2.4223 6 16 2.4876 -1.3561 3.5019 7 6 3.1785 -2.3336 2.2627 8 7 3.9720 -3.4557 2.4195 9 6 4.3088 -3.9328 3.7632 10 6 5.1764 -5.1605 3.6575 11 6 4.5956 -6.4152 3.6147 12 6 5.3880 -7.5439 3.5129 13 6 6.7630 -7.4221 3.4643 14 6 7.3492 -6.1642 3.5124 15 8 8.7003 -6.0412 3.4653 16 6 9.4199 -7.1813 3.4874 17 1 8.9182 -8.1372 3.4579 18 6 10.8040 -7.1264 3.5479 19 7 11.5061 -8.2387 3.5689 20 14 11.6719 -5.4730 3.5995 21 1 11.8411 -5.0467 5.0119 22 1 13.0046 -5.5932 2.9556 23 1 10.8597 -4.4648 2.8721 24 6 6.5503 -5.0321 3.6093 25 7 2.7841 -1.7824 1.1344 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 4.3054 -3.9269 1.6399 34 1 4.8469 -3.1525 4.3014 35 1 3.3936 -4.1802 4.3009 36 1 3.5209 -6.5133 3.6568 37 1 4.9315 -8.5219 3.4756 38 1 7.3815 -8.3041 3.3887 39 1 12.4744 -8.2004 3.6116 40 1 7.0033 -4.0524 3.6466 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322353264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:24 Heat of formation + Delta-G solvation = 44.167510 kcal Electronic energy + Delta-G solvation = -22713.595033 eV Core-core repulsion = 19234.658514 eV Total energy + Delta-G solvation = -3478.936519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.39313 -39.51054 -37.64714 -36.23932 -34.76251 -32.53568 -31.83683 -30.48325 -29.51102 -27.42738 -26.50223 -25.38322 -24.71549 -22.19013 -21.99546 -20.97887 -19.51550 -18.93488 -17.90874 -17.46198 -16.93641 -15.81166 -15.50608 -15.38615 -15.17081 -15.04331 -14.38703 -14.34338 -13.97281 -13.69683 -13.57593 -13.03506 -12.79446 -12.55102 -12.47976 -12.35313 -12.29935 -11.88293 -11.57778 -11.53026 -11.34143 -11.13830 -11.08519 -11.02770 -10.95211 -10.88538 -10.28922 -9.69994 -9.56768 -9.51603 -9.01294 -8.52744 -8.27591 -7.61367 -6.54155 -4.21993 0.68666 0.91308 1.52055 1.78833 2.01368 2.63019 2.80232 3.14057 3.17875 3.31393 4.04571 4.12791 4.28934 4.43567 4.65276 4.77398 4.84930 4.95618 4.99644 5.10447 5.29306 5.37696 5.42390 5.45294 5.51712 5.57624 5.60318 5.67238 5.78811 5.87424 5.95770 6.00573 6.02249 6.24633 6.37016 6.52412 6.81967 6.93261 7.03371 7.07716 7.36315 7.63050 7.71537 7.88192 8.80121 9.39365 10.52935 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019562 B = 0.002465 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.995384 B =11357.297102 C =12105.127267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.008 4.008 3 C -0.142 4.142 4 C 0.313 3.687 5 N -0.502 5.502 6 S 0.169 5.831 7 C 0.349 3.651 8 N -0.655 5.655 9 C 0.165 3.835 10 C -0.080 4.080 11 C -0.182 4.182 12 C -0.077 4.077 13 C -0.207 4.207 14 C 0.156 3.844 15 O -0.213 6.213 16 C -0.393 4.393 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.874 5.874 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.167 4.167 25 N -0.590 5.590 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.420 0.580 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.281 0.719 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.425 12.390 -3.075 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.200 4.200 4 C 0.023 3.977 5 N -0.335 5.335 6 S 0.302 5.698 7 C -0.031 4.031 8 N -0.293 5.293 9 C 0.043 3.957 10 C -0.081 4.081 11 C -0.202 4.202 12 C -0.095 4.095 13 C -0.226 4.226 14 C 0.103 3.897 15 O -0.117 6.117 16 C -0.468 4.468 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.511 5.511 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.183 1.183 24 C -0.186 4.186 25 N -0.326 5.326 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.259 0.741 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.091 0.909 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.455 13.078 -1.940 22.702 hybrid contribution 1.030 -0.318 -1.096 1.537 sum -17.425 12.761 -3.036 21.810 Atomic orbital electron populations 1.21816 0.93062 1.02314 1.02742 1.19803 0.96315 0.95443 0.91621 1.21818 1.01328 0.94107 1.02739 1.23068 0.91218 0.89106 0.94275 1.77460 1.29229 1.24352 1.02499 1.84951 1.46463 1.20396 1.17959 1.25209 0.92187 0.92146 0.93539 1.44298 1.49990 1.24664 1.10396 1.20555 0.98802 0.94957 0.81408 1.18979 0.92440 0.92996 1.03705 1.20545 0.98757 0.91814 1.09066 1.20815 0.93215 0.97816 0.97639 1.21413 0.95163 0.98146 1.07918 1.19032 0.84096 0.93028 0.93552 1.83578 1.13029 1.34891 1.80247 1.20763 0.89350 0.84181 1.52523 0.87518 1.24480 0.95237 0.98754 0.95417 1.69634 1.07646 1.26753 1.47112 0.86180 0.78640 0.82953 0.79140 1.19764 1.20646 1.18348 1.20071 0.91852 0.97282 1.09438 1.67356 1.23599 1.14757 1.26874 0.91512 0.91642 0.92551 0.88420 0.91641 0.92493 0.91499 0.74098 0.90079 0.90071 0.87114 0.86756 0.84659 0.90855 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.11 37.16 0.34 -0.81 16 2 C -0.01 -0.08 3.31 -91.76 -0.30 -0.38 16 3 C -0.14 -1.18 9.11 37.16 0.34 -0.85 16 4 C 0.31 3.99 6.21 -159.03 -0.99 3.01 16 5 N -0.50 -6.65 11.84 29.54 0.35 -6.30 16 6 S 0.17 2.03 23.17 -107.50 -2.49 -0.46 16 7 C 0.35 4.43 8.57 -86.36 -0.74 3.69 16 8 N -0.66 -7.61 5.69 -62.75 -0.36 -7.97 16 9 C 0.17 1.82 5.86 -5.19 -0.03 1.79 16 10 C -0.08 -1.13 5.25 -104.65 -0.55 -1.68 16 11 C -0.18 -2.57 9.70 -39.54 -0.38 -2.95 16 12 C -0.08 -1.21 10.04 -39.61 -0.40 -1.61 16 13 C -0.21 -4.03 9.17 -39.39 -0.36 -4.39 16 14 C 0.16 3.26 6.65 -39.11 -0.26 3.00 16 15 O -0.21 -5.26 8.59 0.03 0.00 -5.26 16 16 C -0.39 -10.51 9.95 30.89 0.31 -10.21 16 17 H 0.11 2.90 5.44 -52.49 -0.29 2.62 16 18 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16 19 N -0.87 -24.35 13.96 55.48 0.77 -23.58 16 20 Si 0.91 20.86 28.62 -169.99 -4.86 15.99 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.26 -6.00 7.11 56.52 0.40 -5.59 16 24 C -0.17 -2.88 9.65 -39.39 -0.38 -3.26 16 25 N -0.59 -8.11 10.60 -14.58 -0.15 -8.26 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.42 4.93 8.59 -40.82 -0.35 4.58 16 34 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.14 2.81 5.64 -52.49 -0.30 2.51 16 39 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -28.85 357.00 -9.99 -38.85 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.13 Total: 4.60 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -3.50 Total: -12.98 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.61 Total: -46.11 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.86 Total: 15.99 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.49 Total: -0.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.85 -9.99 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322353264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.015 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds