Wall clock time and date at job start Tue Mar 31 2020 12:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47086 * 2 1 4 4 C 1.50703 * 109.46823 * 180.02562 * 3 2 1 5 5 N 1.30126 * 121.06594 * 90.02595 * 4 3 2 6 6 S 1.69951 * 105.76462 * 179.72341 * 5 4 3 7 7 C 1.72304 * 94.57476 * 359.97438 * 6 5 4 8 8 N 1.38313 * 127.50205 * 179.97438 * 7 6 5 9 9 C 1.46495 * 119.99984 * 359.97399 * 8 7 6 10 10 C 1.50700 * 109.47002 * 180.02562 * 9 8 7 11 11 C 1.38330 * 119.96670 * 269.72354 * 10 9 8 12 12 C 1.38281 * 120.13934 * 179.76547 * 11 10 9 13 13 C 1.38126 * 120.06447 * 0.51681 * 12 11 10 14 14 C 1.38850 * 119.93151 * 359.74046 * 13 12 11 15 15 O 1.35755 * 120.06651 * 179.97438 * 14 13 12 16 16 C 1.34832 * 116.99957 * 354.48867 * 15 14 13 17 17 H 1.08000 * 119.99924 * 5.05565 * 16 15 14 18 18 C 1.38657 * 119.99676 * 185.06018 * 16 15 14 19 19 N 1.31553 * 120.00381 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99626 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47065 * 59.99802 * 20 18 16 22 22 H 1.48495 * 109.46780 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47061 * 299.99864 * 20 18 16 24 24 C 1.38075 * 119.96459 * 90.00498 * 10 9 8 25 25 N 1.31292 * 121.05575 * 269.73919 * 4 3 2 26 26 H 1.09004 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47464 * 300.00579 * 1 2 3 28 28 H 1.09011 * 109.46904 * 60.00695 * 1 2 3 29 29 H 1.09005 * 109.47578 * 239.99659 * 2 1 3 30 30 H 1.08998 * 109.46928 * 119.99686 * 2 1 3 31 31 H 1.08992 * 109.47001 * 59.99565 * 3 2 1 32 32 H 1.08998 * 109.46981 * 299.99653 * 3 2 1 33 33 H 0.97000 * 119.99676 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.47983 * 300.00406 * 9 8 7 35 35 H 1.08999 * 109.46963 * 60.00126 * 9 8 7 36 36 H 1.08004 * 119.92782 * 359.97438 * 11 10 9 37 37 H 1.07994 * 119.96452 * 180.25467 * 12 11 10 38 38 H 1.08001 * 120.03046 * 179.76514 * 13 12 11 39 39 H 0.96996 * 120.00310 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.03813 * 359.95653 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2180 1.4431 -1.1155 6 16 5.8574 1.4507 -0.6677 7 6 5.5374 1.4533 1.0253 8 7 6.4593 1.4589 2.0565 9 6 7.8933 1.4627 1.7570 10 6 8.6754 1.4678 3.0451 11 6 9.0352 2.6686 3.6302 12 6 9.7487 2.6775 4.8147 13 6 10.1135 1.4865 5.4117 14 6 9.7585 0.2796 4.8241 15 8 10.1160 -0.8925 5.4083 16 6 10.9115 -0.8175 6.4943 17 1 11.1682 0.1456 6.9102 18 6 11.4001 -1.9769 7.0771 19 7 11.0871 -3.1501 6.5708 20 14 12.5028 -1.8730 8.5814 21 1 11.7734 -1.1969 9.6841 22 1 12.8869 -3.2422 9.0090 23 1 13.7242 -1.0973 8.2471 24 6 9.0371 0.2740 3.6371 25 7 4.2248 1.4474 1.1238 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 6.1562 1.4603 2.9779 34 1 8.1469 0.5722 1.1820 35 1 8.1410 2.3520 1.1775 36 1 8.7554 3.6010 3.1626 37 1 10.0246 3.6165 5.2712 38 1 10.6741 1.4941 6.3349 39 1 11.4285 -3.9611 6.9788 40 1 8.7593 -0.6631 3.1778 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324326177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:26 Heat of formation + Delta-G solvation = 39.261014 kcal Electronic energy + Delta-G solvation = -22490.196599 eV Core-core repulsion = 19011.047319 eV Total energy + Delta-G solvation = -3479.149280 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24874 -39.34725 -37.46490 -36.01833 -34.72848 -32.45491 -32.00161 -30.44097 -29.24404 -28.37112 -26.16278 -25.24216 -23.61118 -21.99278 -21.87529 -21.17769 -19.94131 -18.82143 -17.85538 -17.25351 -16.95297 -15.73620 -15.43445 -15.22535 -15.09302 -14.86058 -14.68978 -14.47888 -13.94834 -13.73185 -13.47778 -13.09372 -12.73270 -12.57538 -12.51175 -12.27911 -11.80224 -11.66575 -11.53041 -11.47366 -11.38552 -11.03559 -11.01365 -10.96289 -10.90570 -10.81534 -10.56126 -9.64784 -9.52436 -9.44972 -8.97194 -8.43418 -8.21982 -7.45578 -6.56936 -4.16846 0.73682 0.96705 1.60547 1.85252 2.13619 2.66512 2.87660 3.05970 3.07228 3.10054 3.85713 4.16699 4.39044 4.63622 4.75517 4.80353 4.92049 4.98376 5.00791 5.25476 5.27761 5.41891 5.45102 5.53694 5.55169 5.59115 5.69798 5.71686 5.89444 5.93564 5.95129 6.05774 6.11312 6.36736 6.44981 6.66915 6.86446 6.99677 7.08147 7.15737 7.24770 7.56561 7.76139 7.86320 8.87915 9.54464 10.60365 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.002292 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.227496 B =12215.856509 C =13018.087335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.031 4.031 4 C 0.310 3.690 5 N -0.508 5.508 6 S 0.169 5.831 7 C 0.350 3.650 8 N -0.654 5.654 9 C 0.165 3.835 10 C -0.078 4.078 11 C -0.192 4.192 12 C -0.075 4.075 13 C -0.221 4.221 14 C 0.149 3.851 15 O -0.173 6.173 16 C -0.395 4.395 17 H 0.093 0.907 18 C 0.041 3.959 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.166 4.166 25 N -0.589 5.589 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.420 0.580 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.272 0.728 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 9.495 -10.306 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.074 4.074 4 C 0.020 3.980 5 N -0.342 5.342 6 S 0.303 5.697 7 C -0.030 4.030 8 N -0.292 5.292 9 C 0.043 3.957 10 C -0.079 4.079 11 C -0.211 4.211 12 C -0.093 4.093 13 C -0.240 4.240 14 C 0.095 3.905 15 O -0.076 6.076 16 C -0.471 4.471 17 H 0.110 0.890 18 C -0.164 4.164 19 N -0.493 5.493 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.186 4.186 25 N -0.326 5.326 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.259 0.741 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.147 0.853 39 H 0.082 0.918 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.310 8.988 -11.566 18.506 hybrid contribution 0.151 0.082 2.107 2.114 sum -11.158 9.070 -9.459 17.212 Atomic orbital electron populations 1.21748 0.94985 1.01986 1.01979 1.21463 0.96133 0.95116 1.02904 1.20272 0.83944 0.98968 1.04182 1.23116 0.99285 0.93278 0.82363 1.77512 0.97085 1.34374 1.25204 1.84943 1.13702 1.72743 0.98351 1.25222 0.90201 0.92103 0.95452 1.44311 1.03458 1.75199 1.06204 1.20561 0.76179 1.02866 0.96135 1.18979 1.00155 0.93418 0.95339 1.20473 1.06034 0.96144 0.98478 1.20756 0.96687 0.97065 0.94839 1.21281 1.07460 0.92050 1.03224 1.19298 0.93022 0.86752 0.91450 1.83983 1.58538 1.24717 1.40368 1.21289 1.26945 0.94790 1.04093 0.88996 1.25315 0.97650 0.94156 0.99285 1.70018 1.42066 0.97579 1.39623 0.85764 0.79637 0.78050 0.79915 1.19421 1.20178 1.19402 1.20076 1.05085 0.97388 0.96047 1.67349 1.02970 1.32389 1.29862 0.92418 0.92419 0.92560 0.91601 0.91319 0.88973 0.89313 0.74092 0.90071 0.90149 0.87337 0.87073 0.85300 0.91768 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 3 C -0.03 -0.30 5.75 -27.88 -0.16 -0.46 16 4 C 0.31 4.08 6.82 -159.03 -1.08 3.00 16 5 N -0.51 -7.10 12.15 29.54 0.36 -6.74 16 6 S 0.17 2.14 23.17 -107.50 -2.49 -0.35 16 7 C 0.35 4.66 8.57 -86.35 -0.74 3.92 16 8 N -0.65 -8.08 5.69 -62.75 -0.36 -8.44 16 9 C 0.17 1.97 5.86 -5.20 -0.03 1.94 16 10 C -0.08 -1.18 5.25 -104.65 -0.55 -1.73 16 11 C -0.19 -2.85 9.70 -39.53 -0.38 -3.23 16 12 C -0.08 -1.23 10.04 -39.61 -0.40 -1.62 16 13 C -0.22 -4.37 9.17 -39.40 -0.36 -4.73 16 14 C 0.15 3.31 6.65 -39.11 -0.26 3.05 16 15 O -0.17 -4.66 9.76 0.03 0.00 -4.66 16 16 C -0.40 -10.51 9.49 30.89 0.29 -10.22 16 17 H 0.09 2.24 5.20 -52.49 -0.27 1.96 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.34 13.67 55.48 0.76 -23.58 16 20 Si 0.94 19.69 29.55 -169.99 -5.02 14.66 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.17 -3.11 9.65 -39.39 -0.38 -3.49 16 25 N -0.59 -8.33 10.61 -14.58 -0.15 -8.49 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.42 5.24 8.59 -40.82 -0.35 4.89 16 34 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.13 2.57 5.64 -52.49 -0.30 2.27 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -29.83 359.23 -10.55 -40.39 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.12 Total: 6.25 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -3.94 Total: -14.45 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.61 Total: -47.25 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: 0.00 Total: -4.66 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.49 Total: -0.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.83 -10.55 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324326177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.649 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds