Wall clock time and date at job start Tue Mar 31 2020 12:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47086 * 2 1 4 4 C 1.50703 * 109.46823 * 180.02562 * 3 2 1 5 5 N 1.30126 * 121.06594 * 90.02595 * 4 3 2 6 6 S 1.69951 * 105.76462 * 179.72341 * 5 4 3 7 7 C 1.72304 * 94.57476 * 359.97438 * 6 5 4 8 8 N 1.38313 * 127.50205 * 179.97438 * 7 6 5 9 9 C 1.46495 * 119.99984 * 359.97399 * 8 7 6 10 10 C 1.50700 * 109.47002 * 180.02562 * 9 8 7 11 11 C 1.38330 * 119.96670 * 269.72354 * 10 9 8 12 12 C 1.38281 * 120.13934 * 179.76547 * 11 10 9 13 13 C 1.38126 * 120.06447 * 0.51681 * 12 11 10 14 14 C 1.38850 * 119.93151 * 359.74046 * 13 12 11 15 15 O 1.35755 * 120.06651 * 179.97438 * 14 13 12 16 16 C 1.34832 * 116.99957 * 354.48867 * 15 14 13 17 17 H 1.08000 * 119.99924 * 5.05565 * 16 15 14 18 18 C 1.38657 * 119.99676 * 185.06018 * 16 15 14 19 19 N 1.31553 * 120.00381 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99626 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47065 * 59.99802 * 20 18 16 22 22 H 1.48495 * 109.46780 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47061 * 299.99864 * 20 18 16 24 24 C 1.38075 * 119.96459 * 90.00498 * 10 9 8 25 25 N 1.31292 * 121.05575 * 269.73919 * 4 3 2 26 26 H 1.09004 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47464 * 300.00579 * 1 2 3 28 28 H 1.09011 * 109.46904 * 60.00695 * 1 2 3 29 29 H 1.09005 * 109.47578 * 239.99659 * 2 1 3 30 30 H 1.08998 * 109.46928 * 119.99686 * 2 1 3 31 31 H 1.08992 * 109.47001 * 59.99565 * 3 2 1 32 32 H 1.08998 * 109.46981 * 299.99653 * 3 2 1 33 33 H 0.97000 * 119.99676 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.47983 * 300.00406 * 9 8 7 35 35 H 1.08999 * 109.46963 * 60.00126 * 9 8 7 36 36 H 1.08004 * 119.92782 * 359.97438 * 11 10 9 37 37 H 1.07994 * 119.96452 * 180.25467 * 12 11 10 38 38 H 1.08001 * 120.03046 * 179.76514 * 13 12 11 39 39 H 0.96996 * 120.00310 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.03813 * 359.95653 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2180 1.4431 -1.1155 6 16 5.8574 1.4507 -0.6677 7 6 5.5374 1.4533 1.0253 8 7 6.4593 1.4589 2.0565 9 6 7.8933 1.4627 1.7570 10 6 8.6754 1.4678 3.0451 11 6 9.0352 2.6686 3.6302 12 6 9.7487 2.6775 4.8147 13 6 10.1135 1.4865 5.4117 14 6 9.7585 0.2796 4.8241 15 8 10.1160 -0.8925 5.4083 16 6 10.9115 -0.8175 6.4943 17 1 11.1682 0.1456 6.9102 18 6 11.4001 -1.9769 7.0771 19 7 11.0871 -3.1501 6.5708 20 14 12.5028 -1.8730 8.5814 21 1 11.7734 -1.1969 9.6841 22 1 12.8869 -3.2422 9.0090 23 1 13.7242 -1.0973 8.2471 24 6 9.0371 0.2740 3.6371 25 7 4.2248 1.4474 1.1238 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 6.1562 1.4603 2.9779 34 1 8.1469 0.5722 1.1820 35 1 8.1410 2.3520 1.1775 36 1 8.7554 3.6010 3.1626 37 1 10.0246 3.6165 5.2712 38 1 10.6741 1.4941 6.3349 39 1 11.4285 -3.9611 6.9788 40 1 8.7593 -0.6631 3.1778 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324326177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:25 Heat of formation + Delta-G solvation = 22.048267 kcal Electronic energy + Delta-G solvation = -22490.943000 eV Core-core repulsion = 19011.047319 eV Total energy + Delta-G solvation = -3479.895681 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26047 -40.87238 -38.88225 -37.24160 -35.52446 -34.31692 -33.14694 -31.68536 -30.73647 -29.14127 -27.61288 -26.83718 -24.56273 -23.32190 -22.82210 -22.54608 -20.99887 -19.86267 -19.48168 -18.82329 -18.07359 -16.90648 -16.73751 -16.43608 -16.28437 -16.06804 -15.80587 -15.62865 -15.42790 -15.21607 -14.59582 -14.26506 -14.04276 -13.86716 -13.53772 -13.35666 -13.04541 -12.97990 -12.60601 -12.53661 -12.45791 -12.38175 -12.25341 -12.21060 -12.15228 -11.89461 -11.60249 -11.24157 -10.81975 -10.68059 -10.44513 -9.84044 -9.22064 -9.06344 -8.48354 -6.16952 -0.27952 -0.05313 0.28012 0.67815 0.81644 1.35106 1.44744 1.50953 1.66181 1.81558 2.16409 2.81410 3.11827 3.29389 3.32386 3.69794 4.03289 4.03915 4.11340 4.21314 4.23218 4.33213 4.42351 4.49215 4.53939 4.70190 4.71867 4.79680 4.87305 4.95328 4.96174 5.09633 5.21398 5.22710 5.26281 5.42550 5.43413 5.57383 5.65244 5.69203 5.99327 6.06206 6.13590 6.75692 6.96450 7.76007 8.74315 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.002292 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.227496 B =12215.856509 C =13018.087335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.030 4.030 4 C 0.304 3.696 5 N -0.531 5.531 6 S 0.188 5.812 7 C 0.343 3.657 8 N -0.650 5.650 9 C 0.169 3.831 10 C -0.063 4.063 11 C -0.163 4.163 12 C -0.072 4.072 13 C -0.231 4.231 14 C 0.109 3.891 15 O -0.231 6.231 16 C -0.413 4.413 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.920 5.920 20 Si 1.017 2.983 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.176 4.176 25 N -0.608 5.608 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.419 0.581 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.272 0.728 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 12.734 -11.130 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.073 4.073 4 C 0.015 3.985 5 N -0.365 5.365 6 S 0.322 5.678 7 C -0.036 4.036 8 N -0.288 5.288 9 C 0.046 3.954 10 C -0.064 4.064 11 C -0.182 4.182 12 C -0.090 4.090 13 C -0.250 4.250 14 C 0.058 3.942 15 O -0.138 6.138 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.836 3.164 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.196 4.196 25 N -0.345 5.345 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.258 0.742 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.171 0.829 37 H 0.166 0.834 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.033 12.291 -12.420 21.216 hybrid contribution 0.208 -0.636 2.104 2.207 sum -11.826 11.656 -10.316 19.548 Atomic orbital electron populations 1.21720 0.93156 1.02535 1.02821 1.21412 0.97646 0.94398 1.01695 1.20431 0.82022 0.99562 1.05251 1.23629 1.00585 0.92427 0.81905 1.77478 0.97889 1.35221 1.25891 1.84788 1.13045 1.72549 0.97409 1.25297 0.90261 0.92149 0.95906 1.44209 1.03412 1.75099 1.06064 1.20621 0.75484 1.04788 0.94458 1.19231 0.99067 0.92160 0.95902 1.21053 1.02581 0.97544 0.97000 1.21180 0.95754 0.97012 0.95071 1.21410 1.07704 0.92682 1.03243 1.19888 0.94604 0.86703 0.92978 1.83948 1.60906 1.27232 1.41721 1.21774 1.27110 0.95547 1.04467 0.87898 1.26573 0.99237 0.93547 1.02691 1.70169 1.44986 0.98442 1.42232 0.84670 0.77714 0.78252 0.75763 1.18148 1.19882 1.18076 1.20270 1.05064 0.98854 0.95422 1.67396 1.03505 1.32976 1.30606 0.92054 0.91772 0.91511 0.92513 0.92810 0.88071 0.87981 0.74176 0.89520 0.87034 0.82942 0.83383 0.86250 0.91862 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.11 -1.90 5.92 30.59 0.18 -1.72 16 3 C -0.03 -0.55 5.75 29.85 0.17 -0.37 16 4 C 0.30 7.61 6.82 139.39 0.95 8.56 16 5 N -0.53 -14.08 12.15 -60.45 -0.73 -14.81 16 6 S 0.19 4.40 23.17 -56.49 -1.31 3.09 16 7 C 0.34 8.44 8.57 178.86 1.53 9.97 16 8 N -0.65 -14.43 5.69 -352.45 -2.01 -16.44 16 9 C 0.17 3.46 5.86 85.63 0.50 3.96 16 10 C -0.06 -1.73 5.25 -19.88 -0.10 -1.83 16 11 C -0.16 -4.07 9.70 22.30 0.22 -3.85 16 12 C -0.07 -2.10 10.04 22.25 0.22 -1.88 16 13 C -0.23 -9.07 9.17 22.39 0.21 -8.87 16 14 C 0.11 4.99 6.65 22.58 0.15 5.14 16 15 O -0.23 -13.32 9.76 -22.81 -0.22 -13.54 16 16 C -0.41 -23.14 9.49 67.92 0.64 -22.49 16 17 H 0.10 5.22 5.20 -2.91 -0.02 5.21 16 18 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 19 N -0.92 -55.45 13.67 21.61 0.30 -55.16 16 20 Si 1.02 41.60 29.55 68.60 2.03 43.63 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 24 C -0.18 -6.66 9.65 22.39 0.22 -6.44 16 25 N -0.61 -16.30 10.61 -200.03 -2.12 -18.43 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.42 9.56 8.59 -92.71 -0.80 8.77 16 34 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.11 1.71 8.08 -2.39 -0.02 1.69 16 36 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 37 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.12 4.83 5.64 -2.91 -0.02 4.82 16 39 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -70.10 359.23 2.27 -67.83 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.28 Total: 25.46 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 6.07 Total: -21.64 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -4.57 Total: -104.83 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.22 Total: -13.54 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.31 Total: 3.09 kcal Total: -70.10 2.27 -67.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324326177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.877 kcal (2) G-P(sol) polarization free energy of solvation -70.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds