Wall clock time and date at job start Tue Mar 31 2020 12:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.34879 * 125.05892 * 153.63927 * 3 2 1 5 5 C 1.39075 * 113.62621 * 180.21898 * 4 3 2 6 6 C 1.47305 * 122.96273 * 179.81415 * 5 4 3 7 7 O 1.21621 * 120.00111 * 359.73907 * 6 5 4 8 8 N 1.34780 * 120.00033 * 179.72940 * 6 5 4 9 9 C 1.46495 * 120.00174 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47310 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.51923 * 55.09009 * 10 9 8 12 12 C 1.53076 * 109.62376 * 175.11021 * 10 9 8 13 13 C 1.53038 * 109.65976 * 181.17508 * 12 10 9 14 14 C 1.53191 * 109.31003 * 298.70288 * 13 12 10 15 15 N 1.46925 * 108.78102 * 54.63368 * 14 13 12 16 16 C 1.36937 * 120.63413 * 126.41583 * 15 14 13 17 17 H 1.08000 * 119.99761 * 331.81126 * 16 15 14 18 18 C 1.38806 * 120.00219 * 151.81378 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.07619 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07294 * 18 16 15 21 21 H 1.48506 * 109.46812 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47258 * 119.99807 * 20 18 16 23 23 H 1.48499 * 109.47344 * 240.00342 * 20 18 16 24 24 C 1.46922 * 118.73547 * 306.39257 * 15 14 13 25 25 C 1.36565 * 114.06670 * 359.54983 * 5 4 3 26 26 S 1.70587 * 110.56125 * 0.24520 * 25 5 4 27 27 H 1.08003 * 123.18035 * 0.03750 * 4 3 2 28 28 H 0.96995 * 119.99660 * 0.02562 * 8 6 5 29 29 H 1.09007 * 109.46855 * 60.00946 * 9 8 6 30 30 H 1.09004 * 109.47538 * 300.00892 * 9 8 6 31 31 H 1.08994 * 109.34643 * 61.14444 * 12 10 9 32 32 H 1.08998 * 109.44042 * 301.25617 * 12 10 9 33 33 H 1.08994 * 109.50160 * 178.74692 * 13 12 10 34 34 H 1.09000 * 109.49510 * 58.64559 * 13 12 10 35 35 H 1.09001 * 109.58317 * 294.84482 * 14 13 12 36 36 H 1.09005 * 109.70935 * 174.49370 * 14 13 12 37 37 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.58836 * 173.39156 * 24 15 14 39 39 H 1.08998 * 109.58900 * 293.67675 * 24 15 14 40 40 H 1.08004 * 124.71689 * 180.26507 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3423 0.9902 -0.4902 5 6 4.7055 0.7417 -0.3722 6 6 5.7357 1.6831 -0.8440 7 8 5.4080 2.7304 -1.3683 8 7 7.0413 1.3838 -0.6944 9 6 8.0658 2.3198 -1.1640 10 6 9.4535 1.7434 -0.8762 11 1 9.5358 0.7521 -1.3219 12 6 10.5246 2.6596 -1.4735 13 6 11.9119 2.0688 -1.2115 14 6 12.1448 1.9737 0.2996 15 7 11.0414 1.2128 0.9014 16 6 11.2946 0.1245 1.6930 17 1 12.1908 -0.4583 1.5393 18 6 10.3994 -0.2298 2.6930 19 7 9.4989 0.6362 3.1072 20 14 10.4726 -1.9356 3.4507 21 1 11.5667 -2.7130 2.8152 22 1 10.7310 -1.8191 4.9084 23 1 9.1788 -2.6307 3.2313 24 6 9.6612 1.6421 0.6382 25 6 5.0048 -0.4495 0.2248 26 16 3.5777 -1.2848 0.6440 27 1 2.9415 1.8891 -0.9351 28 1 7.3025 0.5485 -0.2764 29 1 7.9529 3.2721 -0.6457 30 1 7.9522 2.4744 -2.2370 31 1 10.4561 3.6443 -1.0114 32 1 10.3659 2.7508 -2.5480 33 1 12.6711 2.7115 -1.6570 34 1 11.9726 1.0737 -1.6521 35 1 12.1745 2.9754 0.7284 36 1 13.0888 1.4648 0.4948 37 1 8.8736 0.3888 3.8062 38 1 8.9660 0.9129 1.0543 39 1 9.4875 2.6156 1.0967 40 1 6.0058 -0.8121 0.4066 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330563418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:05 Heat of formation + Delta-G solvation = 37.155291 kcal Electronic energy + Delta-G solvation = -23810.529008 eV Core-core repulsion = 20331.288416 eV Total energy + Delta-G solvation = -3479.240591 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.05640 -38.16020 -37.50355 -36.39918 -34.75677 -33.16433 -31.38133 -30.28522 -29.75529 -26.12219 -25.44929 -25.24111 -22.76427 -22.09677 -20.84682 -19.83230 -19.36718 -18.92862 -17.21954 -16.85824 -16.39484 -15.45318 -15.36355 -14.93380 -14.45217 -14.36526 -14.11260 -13.94271 -13.68279 -13.55042 -13.21651 -13.01311 -12.88273 -12.69299 -12.67226 -12.37768 -12.25835 -12.11607 -11.47076 -11.29791 -11.10208 -10.82267 -10.55688 -10.28704 -10.26035 -10.02365 -9.92235 -9.63750 -9.50996 -9.27837 -9.01341 -8.74961 -8.58403 -6.75870 -5.89194 -3.31893 0.07026 0.80346 1.40823 1.48509 2.59619 2.94090 3.24905 3.26252 3.36130 3.37927 3.40339 3.68215 4.38950 4.68224 4.87908 4.92420 5.09998 5.24560 5.38398 5.47400 5.50711 5.53146 5.63940 5.73774 5.80244 5.93514 6.03978 6.22173 6.24356 6.33654 6.44015 6.58680 6.62741 6.75099 6.79022 6.95023 7.13562 7.21325 7.51092 7.66126 7.69911 8.31324 8.34093 9.11021 9.74037 10.31873 11.18633 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.003826 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.080518 B = 7316.937476 C = 9190.850866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.287 3.713 3 C -0.183 4.183 4 C -0.010 4.010 5 C -0.154 4.154 6 C 0.575 3.425 7 O -0.543 6.543 8 N -0.711 5.711 9 C 0.131 3.869 10 C -0.129 4.129 11 H 0.070 0.930 12 C -0.100 4.100 13 C -0.133 4.133 14 C 0.143 3.857 15 N -0.593 5.593 16 C -0.250 4.250 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.179 3.821 25 C -0.190 4.190 26 S 0.287 5.713 27 H 0.163 0.837 28 H 0.404 0.596 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.017 0.983 36 H 0.052 0.948 37 H 0.253 0.747 38 H 0.086 0.914 39 H 0.019 0.981 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.741 -2.543 -7.599 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.029 4.029 3 C -0.303 4.303 4 C -0.045 4.045 5 C -0.171 4.171 6 C 0.360 3.640 7 O -0.422 6.422 8 N -0.361 5.361 9 C 0.007 3.993 10 C -0.149 4.149 11 H 0.088 0.912 12 C -0.138 4.138 13 C -0.172 4.172 14 C 0.016 3.984 15 N -0.315 5.315 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.728 3.272 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.053 3.947 25 C -0.330 4.330 26 S 0.555 5.445 27 H 0.181 0.819 28 H 0.240 0.760 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.037 0.963 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.082 -3.242 -7.110 11.981 hybrid contribution 1.049 0.144 0.084 1.062 sum -8.034 -3.097 -7.027 11.113 Atomic orbital electron populations 1.81298 1.11110 1.07097 1.08991 1.24216 0.90824 0.94247 0.93661 1.19878 0.89576 1.03728 1.17100 1.20306 0.90864 0.98290 0.95022 1.19070 0.94280 0.96457 1.07306 1.17478 0.82190 0.85437 0.78904 1.90783 1.81786 1.25206 1.44437 1.45888 1.05176 1.23835 1.61220 1.21434 0.86519 0.92597 0.98712 1.22156 0.91619 0.99017 1.02132 0.91205 1.21334 0.95022 0.98635 0.98853 1.21980 0.95774 1.00095 0.99341 1.20940 0.92081 0.94878 0.90475 1.44044 0.99942 1.31781 1.55736 1.19246 1.07643 1.02124 1.08944 0.91661 1.25032 1.00081 0.98127 0.96409 1.70056 1.21989 1.32595 1.29972 0.86290 0.77473 0.84482 0.78981 1.20263 1.21695 1.21570 1.20792 0.87417 0.99053 0.87459 1.26344 1.05792 0.98940 1.01922 1.83247 0.91869 1.16613 1.52754 0.81940 0.76024 0.91411 0.92030 0.92431 0.93347 0.93025 0.92423 0.96470 0.92901 0.93681 0.89566 0.96257 0.79700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.32 18.54 41.83 0.78 -4.54 16 2 C 0.29 3.19 15.79 -22.48 -0.35 2.84 16 3 C -0.18 -1.78 6.24 -38.85 -0.24 -2.03 16 4 C -0.01 -0.11 9.71 -40.46 -0.39 -0.50 16 5 C -0.15 -1.80 5.82 -106.50 -0.62 -2.42 16 6 C 0.58 8.41 7.79 -12.57 -0.10 8.31 16 7 O -0.54 -9.56 16.69 5.26 0.09 -9.47 16 8 N -0.71 -10.11 5.30 -61.42 -0.33 -10.44 16 9 C 0.13 1.97 5.08 -4.04 -0.02 1.95 16 10 C -0.13 -2.11 2.38 -90.48 -0.22 -2.32 16 11 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 12 C -0.10 -1.52 5.17 -26.67 -0.14 -1.66 16 13 C -0.13 -2.12 6.09 -26.61 -0.16 -2.28 16 14 C 0.14 2.80 6.52 -3.71 -0.02 2.78 16 15 N -0.59 -13.68 3.00 -172.32 -0.52 -14.20 16 16 C -0.25 -6.35 9.58 -15.06 -0.14 -6.50 16 17 H 0.07 1.66 7.89 -52.49 -0.41 1.24 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 19 N -0.90 -23.93 11.20 55.49 0.62 -23.31 16 20 Si 0.90 19.90 29.59 -169.99 -5.03 14.87 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.18 3.77 4.38 -3.71 -0.02 3.75 16 25 C -0.19 -1.82 10.40 30.13 0.31 -1.51 16 26 S 0.29 2.32 23.03 -107.50 -2.48 -0.16 16 27 H 0.16 1.69 7.99 -52.48 -0.42 1.27 16 28 H 0.40 5.38 6.15 -40.82 -0.25 5.13 16 29 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 37 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 38 H 0.09 1.95 5.26 -51.93 -0.27 1.68 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.19 1.59 6.98 -52.48 -0.37 1.23 16 LS Contribution 352.29 15.07 5.31 5.31 Total: -1.00 -29.88 352.29 -8.83 -38.71 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.08 Total: 2.85 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.20 Total: 0.37 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.56 Total: -52.49 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.48 Total: -0.16 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.88 -8.83 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330563418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.867 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds