Wall clock time and date at job start Tue Mar 31 2020 12:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.34879 * 125.05892 * 153.63927 * 3 2 1 5 5 C 1.39075 * 113.62621 * 180.21898 * 4 3 2 6 6 C 1.47305 * 122.96273 * 179.81415 * 5 4 3 7 7 O 1.21621 * 120.00111 * 359.73907 * 6 5 4 8 8 N 1.34780 * 120.00033 * 179.72940 * 6 5 4 9 9 C 1.46495 * 120.00174 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47310 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.51923 * 55.09009 * 10 9 8 12 12 C 1.53076 * 109.62376 * 175.11021 * 10 9 8 13 13 C 1.53038 * 109.65976 * 181.17508 * 12 10 9 14 14 C 1.53191 * 109.31003 * 298.70288 * 13 12 10 15 15 N 1.46925 * 108.78102 * 54.63368 * 14 13 12 16 16 C 1.36937 * 120.63413 * 126.41583 * 15 14 13 17 17 H 1.08000 * 119.99761 * 331.81126 * 16 15 14 18 18 C 1.38806 * 120.00219 * 151.81378 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.07619 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07294 * 18 16 15 21 21 H 1.48506 * 109.46812 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47258 * 119.99807 * 20 18 16 23 23 H 1.48499 * 109.47344 * 240.00342 * 20 18 16 24 24 C 1.46922 * 118.73547 * 306.39257 * 15 14 13 25 25 C 1.36565 * 114.06670 * 359.54983 * 5 4 3 26 26 S 1.70587 * 110.56125 * 0.24520 * 25 5 4 27 27 H 1.08003 * 123.18035 * 0.03750 * 4 3 2 28 28 H 0.96995 * 119.99660 * 0.02562 * 8 6 5 29 29 H 1.09007 * 109.46855 * 60.00946 * 9 8 6 30 30 H 1.09004 * 109.47538 * 300.00892 * 9 8 6 31 31 H 1.08994 * 109.34643 * 61.14444 * 12 10 9 32 32 H 1.08998 * 109.44042 * 301.25617 * 12 10 9 33 33 H 1.08994 * 109.50160 * 178.74692 * 13 12 10 34 34 H 1.09000 * 109.49510 * 58.64559 * 13 12 10 35 35 H 1.09001 * 109.58317 * 294.84482 * 14 13 12 36 36 H 1.09005 * 109.70935 * 174.49370 * 14 13 12 37 37 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.58836 * 173.39156 * 24 15 14 39 39 H 1.08998 * 109.58900 * 293.67675 * 24 15 14 40 40 H 1.08004 * 124.71689 * 180.26507 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3423 0.9902 -0.4902 5 6 4.7055 0.7417 -0.3722 6 6 5.7357 1.6831 -0.8440 7 8 5.4080 2.7304 -1.3683 8 7 7.0413 1.3838 -0.6944 9 6 8.0658 2.3198 -1.1640 10 6 9.4535 1.7434 -0.8762 11 1 9.5358 0.7521 -1.3219 12 6 10.5246 2.6596 -1.4735 13 6 11.9119 2.0688 -1.2115 14 6 12.1448 1.9737 0.2996 15 7 11.0414 1.2128 0.9014 16 6 11.2946 0.1245 1.6930 17 1 12.1908 -0.4583 1.5393 18 6 10.3994 -0.2298 2.6930 19 7 9.4989 0.6362 3.1072 20 14 10.4726 -1.9356 3.4507 21 1 11.5667 -2.7130 2.8152 22 1 10.7310 -1.8191 4.9084 23 1 9.1788 -2.6307 3.2313 24 6 9.6612 1.6421 0.6382 25 6 5.0048 -0.4495 0.2248 26 16 3.5777 -1.2848 0.6440 27 1 2.9415 1.8891 -0.9351 28 1 7.3025 0.5485 -0.2764 29 1 7.9529 3.2721 -0.6457 30 1 7.9522 2.4744 -2.2370 31 1 10.4561 3.6443 -1.0114 32 1 10.3659 2.7508 -2.5480 33 1 12.6711 2.7115 -1.6570 34 1 11.9726 1.0737 -1.6521 35 1 12.1745 2.9754 0.7284 36 1 13.0888 1.4648 0.4948 37 1 8.8736 0.3888 3.8062 38 1 8.9660 0.9129 1.0543 39 1 9.4875 2.6156 1.0967 40 1 6.0058 -0.8121 0.4066 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330563418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:04 Heat of formation + Delta-G solvation = 19.994689 kcal Electronic energy + Delta-G solvation = -23811.273147 eV Core-core repulsion = 20331.288416 eV Total energy + Delta-G solvation = -3479.984731 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.14633 -39.46521 -38.61476 -37.35317 -36.12733 -34.79265 -32.72850 -31.69397 -31.01787 -27.37983 -27.06979 -26.32302 -24.01610 -23.55742 -22.19615 -21.06286 -20.32254 -20.11361 -18.67582 -18.12492 -17.44890 -16.87871 -16.50530 -16.34030 -15.74565 -15.51097 -15.29438 -15.18628 -14.96688 -14.89169 -14.50213 -14.18231 -13.98933 -13.80512 -13.76199 -13.68864 -13.56656 -13.31878 -12.85886 -12.84793 -12.51438 -12.25259 -12.16416 -11.92008 -11.74713 -11.51260 -11.31230 -11.05352 -10.94625 -10.50189 -10.15888 -10.02652 -9.62670 -8.60633 -7.80713 -5.26910 -0.73631 0.04354 0.54764 0.62884 1.49534 1.55308 1.63948 1.69954 2.01455 2.20639 2.38121 2.56626 2.79080 3.31206 3.65429 3.86379 3.94534 4.04554 4.10171 4.13727 4.19557 4.39904 4.53615 4.59486 4.70030 4.81204 4.86035 4.92727 4.92817 5.00589 5.08385 5.19882 5.26895 5.39560 5.43400 5.51750 5.60521 5.72813 5.83718 6.26068 6.45435 6.53293 7.18513 7.21635 7.91613 8.44629 9.24761 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.003826 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.080518 B = 7316.937476 C = 9190.850866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.306 3.694 3 C -0.192 4.192 4 C -0.012 4.012 5 C -0.176 4.176 6 C 0.575 3.425 7 O -0.580 6.580 8 N -0.710 5.710 9 C 0.138 3.862 10 C -0.112 4.112 11 H 0.074 0.926 12 C -0.100 4.100 13 C -0.121 4.121 14 C 0.135 3.865 15 N -0.611 5.611 16 C -0.263 4.263 17 H 0.061 0.939 18 C -0.041 4.041 19 N -0.929 5.929 20 Si 0.959 3.041 21 H -0.273 1.273 22 H -0.301 1.301 23 H -0.277 1.277 24 C 0.189 3.811 25 C -0.187 4.187 26 S 0.368 5.632 27 H 0.159 0.841 28 H 0.409 0.591 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.007 0.993 36 H 0.049 0.951 37 H 0.251 0.749 38 H 0.068 0.932 39 H -0.015 1.015 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -4.163 -8.488 11.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.009 4.009 3 C -0.313 4.313 4 C -0.047 4.047 5 C -0.192 4.192 6 C 0.361 3.639 7 O -0.461 6.461 8 N -0.360 5.360 9 C 0.014 3.986 10 C -0.132 4.132 11 H 0.092 0.908 12 C -0.138 4.138 13 C -0.160 4.160 14 C 0.009 3.991 15 N -0.335 5.335 16 C -0.393 4.393 17 H 0.079 0.921 18 C -0.237 4.237 19 N -0.575 5.575 20 Si 0.787 3.213 21 H -0.198 1.198 22 H -0.228 1.228 23 H -0.202 1.202 24 C 0.063 3.937 25 C -0.328 4.328 26 S 0.636 5.364 27 H 0.177 0.823 28 H 0.245 0.755 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.003 0.997 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.872 -4.874 -8.019 12.914 hybrid contribution 1.073 0.633 0.436 1.319 sum -7.799 -4.241 -7.583 11.675 Atomic orbital electron populations 1.81317 1.12139 1.08344 1.10317 1.24281 0.90875 0.93169 0.92605 1.19897 0.89006 1.04686 1.17677 1.20235 0.90652 0.98547 0.95238 1.18799 0.93756 0.97053 1.09643 1.17863 0.82537 0.85380 0.78100 1.90755 1.82287 1.26863 1.46233 1.45872 1.05168 1.23830 1.61137 1.21305 0.85959 0.91966 0.99366 1.21915 0.92982 0.99841 0.98469 0.90763 1.21365 0.93956 0.97823 1.00656 1.21858 0.97094 1.00949 0.96115 1.21111 0.91118 0.93766 0.93064 1.44339 1.01389 1.31819 1.55914 1.19495 1.07588 1.02898 1.09344 0.92095 1.25670 0.99973 1.01108 0.96937 1.70199 1.22694 1.34116 1.30508 0.85353 0.77952 0.80759 0.77208 1.19800 1.22830 1.20237 1.20601 0.86331 0.96402 0.90380 1.26582 1.07428 0.98330 1.00419 1.83070 0.89336 1.13977 1.50045 0.82342 0.75483 0.93009 0.90478 0.92865 0.90146 0.90111 0.92323 0.97455 0.93210 0.93985 0.91400 0.99696 0.78671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.30 18.54 19.00 0.35 -10.95 16 2 C 0.31 6.49 15.79 88.33 1.39 7.88 16 3 C -0.19 -3.46 6.24 22.74 0.14 -3.32 16 4 C -0.01 -0.25 9.71 21.70 0.21 -0.04 16 5 C -0.18 -3.96 5.82 -21.08 -0.12 -4.08 16 6 C 0.57 16.75 7.79 86.63 0.67 17.43 16 7 O -0.58 -20.66 16.69 -4.10 -0.07 -20.73 16 8 N -0.71 -19.96 5.30 -466.47 -2.47 -22.43 16 9 C 0.14 4.07 5.08 86.38 0.44 4.51 16 10 C -0.11 -3.55 2.38 -10.70 -0.03 -3.58 16 11 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 12 C -0.10 -2.82 5.17 30.63 0.16 -2.67 16 13 C -0.12 -3.60 6.09 30.67 0.19 -3.41 16 14 C 0.13 5.25 6.52 86.36 0.56 5.82 16 15 N -0.61 -28.41 3.00 -699.11 -2.09 -30.51 16 16 C -0.26 -13.43 9.58 84.03 0.81 -12.63 16 17 H 0.06 3.10 7.89 -2.91 -0.02 3.07 16 18 C -0.04 -2.09 4.92 84.86 0.42 -1.67 16 19 N -0.93 -49.97 11.20 21.65 0.24 -49.73 16 20 Si 0.96 40.59 29.59 68.60 2.03 42.62 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 24 C 0.19 8.05 4.38 86.36 0.38 8.43 16 25 C -0.19 -3.22 10.40 67.43 0.70 -2.52 16 26 S 0.37 4.91 23.03 -56.49 -1.30 3.61 16 27 H 0.16 3.34 7.99 -2.91 -0.02 3.31 16 28 H 0.41 10.65 6.15 -92.71 -0.57 10.08 16 29 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.05 1.92 7.93 -2.38 -0.02 1.90 16 37 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 38 H 0.07 3.12 5.26 -2.39 -0.01 3.11 16 39 H -0.02 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H 0.20 2.95 6.98 -2.91 -0.02 2.93 16 Total: -1.00 -65.21 352.29 3.12 -62.10 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.51 Total: 15.87 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.92 Total: 10.15 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -3.97 Total: -113.61 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.07 Total: -20.73 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -1.30 Total: 3.61 kcal Total: -65.21 3.12 -62.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330563418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.090 kcal (2) G-P(sol) polarization free energy of solvation -65.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds