Wall clock time and date at job start Tue Mar 31 2020 12:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39671 * 127.31408 * 2 1 4 4 N 1.30872 * 107.85704 * 179.82853 * 3 2 1 5 5 N 1.28437 * 110.93324 * 0.45288 * 4 3 2 6 6 C 1.46498 * 125.19177 * 179.74907 * 5 4 3 7 7 C 1.36605 * 109.61868 * 359.71356 * 5 4 3 8 8 C 1.47130 * 126.88391 * 179.97438 * 7 5 4 9 9 O 1.21648 * 119.99808 * 92.19244 * 8 7 5 10 10 N 1.34772 * 120.00408 * 272.18791 * 8 7 5 11 11 C 1.39991 * 120.00464 * 185.61203 * 10 8 7 12 12 C 1.38732 * 120.07732 * 16.20748 * 11 10 8 13 13 C 1.38181 * 120.01578 * 179.72164 * 12 11 10 14 14 C 1.38560 * 120.18204 * 0.55615 * 13 12 11 15 15 F 1.35097 * 119.92222 * 179.74569 * 14 13 12 16 16 C 1.38346 * 120.15457 * 359.72127 * 14 13 12 17 17 C 1.38733 * 119.97885 * 0.02562 * 16 14 13 18 18 O 1.35774 * 120.08727 * 180.02562 * 17 16 14 19 19 C 1.34809 * 116.99867 * 5.88455 * 18 17 16 20 20 H 1.07999 * 120.00039 * 5.79355 * 19 18 17 21 21 C 1.38638 * 119.99938 * 185.79575 * 19 18 17 22 22 N 1.31575 * 119.99914 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00269 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46813 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47161 * 119.99590 * 23 21 19 26 26 H 1.48492 * 109.47374 * 239.99967 * 23 21 19 27 27 H 1.08994 * 109.47113 * 269.68212 * 1 2 3 28 28 H 1.09001 * 109.46349 * 149.68264 * 1 2 3 29 29 H 1.09001 * 109.47211 * 29.68826 * 1 2 3 30 30 H 1.07995 * 126.07333 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47423 * 274.80217 * 6 5 4 32 32 H 1.09004 * 109.47070 * 34.80575 * 6 5 4 33 33 H 1.08996 * 109.47185 * 154.80177 * 6 5 4 34 34 H 0.97006 * 119.99440 * 5.61501 * 10 8 7 35 35 H 1.07994 * 119.99133 * 359.97438 * 12 11 10 36 36 H 1.08002 * 119.91248 * 180.26042 * 13 12 11 37 37 H 1.07998 * 120.00747 * 180.02562 * 16 14 13 38 38 H 0.97003 * 119.99847 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3537 1.1108 0.0000 4 7 3.5877 0.6749 0.0037 5 7 3.6208 -0.6090 -0.0033 6 6 4.8394 -1.4222 -0.0071 7 6 2.3463 -1.1007 -0.0061 8 6 1.9460 -2.5165 -0.0144 9 8 1.7419 -3.0970 1.0350 10 7 1.8054 -3.1702 -1.1845 11 6 1.3120 -4.4802 -1.1997 12 6 0.6589 -4.9901 -0.0870 13 6 0.1673 -6.2814 -0.1054 14 6 0.3346 -7.0745 -1.2291 15 9 -0.1436 -8.3379 -1.2395 16 6 0.9898 -6.5754 -2.3407 17 6 1.4814 -5.2781 -2.3313 18 8 2.1242 -4.7859 -3.4212 19 6 2.1453 -5.5634 -4.5223 20 1 1.5863 -6.4872 -4.5418 21 6 2.8847 -5.1770 -5.6296 22 7 3.5654 -4.0513 -5.6060 23 14 2.9134 -6.2540 -7.1556 24 1 2.0717 -7.4562 -6.9289 25 1 2.3824 -5.4882 -8.3119 26 1 4.3093 -6.6739 -7.4390 27 1 -0.3633 -0.0057 1.0276 28 1 -0.3632 -0.8872 -0.5188 29 1 -0.3634 0.8928 -0.5090 30 1 2.0450 2.1457 -0.0004 31 1 5.1901 -1.5466 -1.0316 32 1 5.6096 -0.9252 0.5828 33 1 4.6253 -2.3997 0.4249 34 1 2.0461 -2.7329 -2.0163 35 1 0.5311 -4.3763 0.7923 36 1 -0.3446 -6.6752 0.7603 37 1 1.1185 -7.1955 -3.2155 38 1 4.0825 -3.7808 -6.3809 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361765200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:46 Heat of formation + Delta-G solvation = -11.023498 kcal Electronic energy + Delta-G solvation = -26348.333321 eV Core-core repulsion = 22300.790365 eV Total energy + Delta-G solvation = -4047.542956 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.84652 -43.58898 -41.70975 -40.21913 -38.02475 -35.80224 -34.99848 -34.33896 -33.03743 -31.16689 -30.34641 -29.09195 -27.44408 -27.10744 -24.93943 -23.88731 -22.84068 -21.95683 -20.94483 -20.22279 -19.66254 -18.90104 -18.46869 -17.44427 -17.12752 -16.96771 -16.67884 -16.48585 -16.12471 -15.96602 -15.80395 -15.45723 -15.31203 -14.91270 -14.60614 -14.31284 -14.25062 -14.07577 -13.89323 -13.54793 -13.47882 -13.38355 -13.16389 -13.07742 -12.66978 -12.40919 -12.13483 -11.73842 -11.67383 -11.54702 -11.00971 -10.86081 -10.24036 -9.71692 -9.61439 -8.80103 -8.54151 -6.20108 0.04379 0.41108 0.53773 0.99680 1.36849 1.42096 1.52726 1.58247 1.65956 1.99434 2.12557 2.63223 3.00781 3.10457 3.33156 3.41403 3.50430 3.91782 4.06235 4.13884 4.16248 4.19252 4.29476 4.41337 4.46576 4.50030 4.61426 4.84048 4.87022 4.95944 5.08084 5.12851 5.18843 5.24663 5.32020 5.38858 5.56229 5.71223 5.89487 5.98550 6.20156 6.74289 6.90993 7.00025 7.56974 8.66295 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.004705 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.156329 B = 5949.444443 C = 7874.635946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.156 4.156 3 C 0.005 3.995 4 N -0.298 5.298 5 N -0.276 5.276 6 C 0.079 3.921 7 C -0.057 4.057 8 C 0.598 3.402 9 O -0.532 6.532 10 N -0.628 5.628 11 C 0.059 3.941 12 C -0.073 4.073 13 C -0.200 4.200 14 C 0.123 3.877 15 F -0.144 7.144 16 C -0.260 4.260 17 C 0.132 3.868 18 O -0.204 6.204 19 C -0.413 4.413 20 H 0.101 0.899 21 C -0.008 4.008 22 N -0.905 5.905 23 Si 1.011 2.989 24 H -0.255 1.255 25 H -0.268 1.268 26 H -0.270 1.270 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.221 0.779 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.419 0.581 35 H 0.173 0.827 36 H 0.160 0.840 37 H 0.138 0.862 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 5.777 8.704 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.167 4.167 3 C -0.172 4.172 4 N -0.129 5.129 5 N -0.064 5.064 6 C -0.061 4.061 7 C -0.185 4.185 8 C 0.384 3.616 9 O -0.409 6.409 10 N -0.270 5.270 11 C -0.036 4.036 12 C -0.093 4.093 13 C -0.219 4.219 14 C 0.103 3.897 15 F -0.123 7.123 16 C -0.281 4.281 17 C 0.078 3.922 18 O -0.109 6.109 19 C -0.488 4.488 20 H 0.118 0.882 21 C -0.208 4.208 22 N -0.541 5.541 23 Si 0.831 3.169 24 H -0.179 1.179 25 H -0.193 1.193 26 H -0.195 1.195 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.238 0.762 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.108 0.892 34 H 0.255 0.745 35 H 0.190 0.810 36 H 0.177 0.823 37 H 0.155 0.845 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.811 5.957 9.262 11.160 hybrid contribution -0.371 -0.969 -1.390 1.735 sum -2.182 4.988 7.872 9.571 Atomic orbital electron populations 1.20233 0.86700 1.03500 1.03151 1.21106 0.98103 0.90264 1.07257 1.24032 0.86868 1.01204 1.05071 1.73106 1.25530 0.93230 1.21006 1.45751 1.05734 1.03883 1.51073 1.22413 0.83558 0.94468 1.05656 1.21186 0.87396 0.93749 1.16191 1.17096 0.77297 0.84203 0.82988 1.90645 1.50907 1.67031 1.32314 1.43193 1.61221 1.12538 1.10028 1.17220 1.06045 0.85238 0.95059 1.21482 0.94447 0.95685 0.97643 1.20952 1.07855 0.94568 0.98555 1.17512 0.97462 0.79590 0.95114 1.91434 1.86174 1.37622 1.97030 1.20916 1.09352 0.96920 1.00877 1.18990 0.93833 0.91326 0.88016 1.83888 1.65227 1.43623 1.18191 1.21760 1.31684 1.05880 0.89503 0.88206 1.26372 0.94496 0.98236 1.01666 1.70124 1.29470 1.22549 1.31973 0.84618 0.78859 0.77667 0.75742 1.17890 1.19345 1.19497 0.90081 0.93000 0.88358 0.76238 0.88942 0.86002 0.89224 0.74477 0.81027 0.82273 0.84484 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 10.28 71.24 0.73 -0.87 16 2 C -0.16 -4.09 6.30 -19.47 -0.12 -4.21 16 3 C 0.00 0.12 12.00 85.18 1.02 1.14 16 4 N -0.30 -8.34 11.90 -57.14 -0.68 -9.02 16 5 N -0.28 -7.95 3.75 -356.05 -1.33 -9.29 16 6 C 0.08 1.82 11.21 127.77 1.43 3.26 16 7 C -0.06 -1.75 6.71 40.78 0.27 -1.48 16 8 C 0.60 20.34 6.64 86.58 0.58 20.92 16 9 O -0.53 -19.59 13.86 -4.18 -0.06 -19.65 16 10 N -0.63 -23.07 5.34 -306.24 -1.64 -24.70 16 11 C 0.06 2.36 6.56 38.26 0.25 2.62 16 12 C -0.07 -2.58 8.84 22.37 0.20 -2.38 16 13 C -0.20 -6.60 10.02 22.33 0.22 -6.38 16 14 C 0.12 4.56 7.29 22.37 0.16 4.72 16 15 F -0.14 -5.04 17.26 44.97 0.78 -4.27 16 16 C -0.26 -10.97 9.10 22.41 0.20 -10.76 16 17 C 0.13 5.96 6.66 22.69 0.15 6.11 16 18 O -0.20 -10.67 9.08 -22.80 -0.21 -10.88 16 19 C -0.41 -21.73 9.44 67.92 0.64 -21.09 16 20 H 0.10 4.94 5.31 -2.91 -0.02 4.92 16 21 C -0.01 -0.41 5.49 84.83 0.47 0.06 16 22 N -0.90 -49.92 13.67 21.61 0.30 -49.62 16 23 Si 1.01 39.83 29.55 68.60 2.03 41.85 16 24 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 25 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.20 8.07 -2.39 -0.02 1.18 16 29 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.22 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.12 7.66 -2.39 -0.02 2.11 16 34 H 0.42 16.01 8.18 -92.70 -0.76 15.25 16 35 H 0.17 5.89 5.18 -6.68 -0.03 5.85 16 36 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 37 H 0.14 5.89 5.72 -2.91 -0.02 5.87 16 38 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -64.53 339.39 5.76 -58.77 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.36 Total: 35.16 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 6.21 Total: -8.36 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -3.36 Total: -92.63 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.26 Total: -30.53 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.78 Total: -4.27 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.85 kcal Total: -64.53 5.76 -58.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361765200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.746 kcal (2) G-P(sol) polarization free energy of solvation -64.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds