Wall clock time and date at job start Tue Mar 31 2020 12:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34133 * 125.98727 * 2 1 4 4 C 1.30500 * 109.25155 * 180.02562 * 3 2 1 5 5 N 1.35039 * 108.70181 * 359.76816 * 4 3 2 6 6 H 0.97004 * 126.40018 * 180.26827 * 5 4 3 7 7 C 1.34668 * 125.99045 * 180.02562 * 2 1 3 8 8 C 1.50695 * 126.59264 * 359.96454 * 7 2 1 9 9 C 1.50700 * 109.47348 * 84.99749 * 8 7 2 10 10 O 1.21292 * 119.99789 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00144 * 180.02562 * 9 8 7 12 12 C 1.40086 * 120.00043 * 174.44164 * 11 9 8 13 13 C 1.38713 * 120.07628 * 335.19530 * 12 11 9 14 14 C 1.38192 * 120.01750 * 179.69792 * 13 12 11 15 15 C 1.38546 * 120.17755 * 0.59747 * 14 13 12 16 16 F 1.35100 * 119.92519 * 179.70037 * 15 14 13 17 17 C 1.38340 * 120.15509 * 359.68136 * 15 14 13 18 18 C 1.38745 * 119.97859 * 0.02562 * 17 15 14 19 19 O 1.35765 * 120.09149 * 179.97438 * 18 17 15 20 20 C 1.34807 * 117.00192 * 5.16505 * 19 18 17 21 21 H 1.08004 * 119.99826 * 354.98417 * 20 19 18 22 22 C 1.38637 * 120.00268 * 174.98582 * 20 19 18 23 23 N 1.31567 * 119.99987 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99937 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47049 * 59.99670 * 24 22 20 26 26 H 1.48500 * 109.47121 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46903 * 299.99480 * 24 22 20 28 28 H 1.09003 * 109.47213 * 269.99975 * 1 2 3 29 29 H 1.09004 * 109.47132 * 29.99575 * 1 2 3 30 30 H 1.09001 * 109.47259 * 149.99581 * 1 2 3 31 31 H 1.08003 * 125.64704 * 180.02562 * 4 3 2 32 32 H 1.08992 * 109.47487 * 205.00094 * 8 7 2 33 33 H 1.09005 * 109.46746 * 324.99988 * 8 7 2 34 34 H 0.97001 * 119.99821 * 354.43731 * 11 9 8 35 35 H 1.08000 * 119.98914 * 359.97438 * 13 12 11 36 36 H 1.08003 * 119.90751 * 180.30208 * 14 13 12 37 37 H 1.07997 * 120.01421 * 180.02562 * 17 15 14 38 38 H 0.97001 * 119.99632 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5448 0.7095 -0.0006 5 7 3.5912 -0.6400 0.0043 6 1 4.3912 -1.1885 0.0087 7 6 2.2983 -1.0896 -0.0005 8 6 1.8473 -2.5275 -0.0004 9 6 1.5780 -2.9696 -1.4157 10 8 1.7363 -2.1933 -2.3340 11 7 1.1602 -4.2274 -1.6608 12 6 0.7984 -4.6044 -2.9606 13 6 0.3713 -3.6468 -3.8687 14 6 0.0206 -4.0192 -5.1525 15 6 0.0823 -5.3500 -5.5330 16 9 -0.2675 -5.7092 -6.7875 17 6 0.5017 -6.3118 -4.6314 18 6 0.8611 -5.9443 -3.3427 19 8 1.2726 -6.8864 -2.4559 20 6 1.4121 -8.1444 -2.9200 21 1 1.1224 -8.3814 -3.9331 22 6 1.9275 -9.1338 -2.0969 23 7 2.2809 -8.8449 -0.8630 24 14 2.1215 -10.8767 -2.7404 25 1 3.0341 -10.8731 -3.9119 26 1 2.6906 -11.7380 -1.6729 27 1 0.7947 -11.4044 -3.1480 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 4.4003 1.3688 -0.0003 32 1 2.6273 -3.1530 0.4335 33 1 0.9356 -2.6222 0.5896 34 1 1.1102 -4.8715 -0.9373 35 1 0.3171 -2.6093 -3.5737 36 1 -0.3070 -3.2715 -5.8596 37 1 0.5494 -7.3485 -4.9305 38 1 2.6418 -9.5371 -0.2872 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362243221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:19 Heat of formation + Delta-G solvation = -44.577790 kcal Electronic energy + Delta-G solvation = -25893.694931 eV Core-core repulsion = 21844.696952 eV Total energy + Delta-G solvation = -4048.997980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.84166 -43.04135 -41.60666 -40.17179 -38.01331 -35.58999 -34.30918 -34.00642 -33.75493 -31.17200 -30.54836 -29.24786 -27.41729 -26.72144 -24.23403 -23.37977 -22.58361 -21.63890 -20.50594 -20.16350 -19.58937 -18.73928 -18.30184 -18.02311 -17.05934 -16.93676 -16.56780 -16.38571 -16.00859 -15.93015 -15.53775 -15.44504 -15.25333 -15.10735 -14.62057 -14.25567 -13.99646 -13.80755 -13.70913 -13.60962 -13.46340 -13.26298 -13.00579 -12.95685 -12.60059 -12.34995 -12.16434 -11.67584 -11.31790 -10.94286 -10.89664 -10.81695 -10.69073 -9.57371 -9.15006 -8.72875 -8.51562 -6.16809 0.15669 0.44079 1.02627 1.37939 1.45476 1.50852 1.56980 2.03901 2.14171 2.23899 2.39994 2.67167 3.01849 3.18041 3.44175 3.59059 3.77180 3.90944 3.99494 4.07836 4.16430 4.34343 4.42405 4.48206 4.53516 4.65076 4.89075 4.92538 4.99801 5.05203 5.12015 5.21338 5.26866 5.29704 5.34306 5.51764 5.84230 5.92653 6.02066 6.47131 6.60047 6.93485 7.11225 7.16432 7.60354 8.68563 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013296 B = 0.003628 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.417892 B = 7716.828656 C = 9358.279685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.005 4.005 3 N -0.535 5.535 4 C 0.194 3.806 5 N -0.557 5.557 6 H 0.432 0.568 7 C -0.016 4.016 8 C -0.055 4.055 9 C 0.511 3.489 10 O -0.552 6.552 11 N -0.649 5.649 12 C 0.068 3.932 13 C -0.062 4.062 14 C -0.204 4.204 15 C 0.119 3.881 16 F -0.146 7.146 17 C -0.264 4.264 18 C 0.130 3.870 19 O -0.200 6.200 20 C -0.417 4.417 21 H 0.097 0.903 22 C -0.005 4.005 23 N -0.902 5.902 24 Si 1.008 2.992 25 H -0.264 1.264 26 H -0.270 1.270 27 H -0.260 1.260 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.245 0.755 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.421 0.579 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 10.876 3.755 11.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.134 4.134 3 N -0.256 5.256 4 C -0.090 4.090 5 N -0.161 5.161 6 H 0.272 0.728 7 C -0.132 4.132 8 C -0.095 4.095 9 C 0.300 3.700 10 O -0.430 6.430 11 N -0.293 5.293 12 C -0.028 4.028 13 C -0.083 4.083 14 C -0.224 4.224 15 C 0.099 3.901 16 F -0.125 7.125 17 C -0.285 4.285 18 C 0.076 3.924 19 O -0.106 6.106 20 C -0.493 4.493 21 H 0.115 0.885 22 C -0.205 4.205 23 N -0.539 5.539 24 Si 0.828 3.172 25 H -0.188 1.188 26 H -0.194 1.194 27 H -0.185 1.185 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.261 0.739 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.258 0.742 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.154 0.846 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.608 12.162 3.570 12.690 hybrid contribution 0.835 -2.411 -0.382 2.580 sum 1.443 9.751 3.188 10.360 Atomic orbital electron populations 1.20062 0.87161 1.02482 1.02776 1.20805 0.97306 0.88261 1.07048 1.70145 1.02052 1.31566 1.21837 1.25614 0.97583 0.82430 1.03412 1.43169 1.08068 1.08888 1.55929 0.72790 1.20285 0.84781 0.95476 1.12633 1.20050 1.06439 0.90533 0.92522 1.21198 0.75637 0.80620 0.92546 1.90652 1.51806 1.53546 1.46990 1.43299 1.64181 1.13382 1.08425 1.17158 1.07846 0.89668 0.88104 1.20965 0.95841 0.99670 0.91804 1.20887 1.09474 0.93903 0.98139 1.17469 1.00092 0.93418 0.79140 1.91425 1.89807 1.92820 1.38401 1.20937 1.12454 1.00764 0.94304 1.19051 0.95201 0.88941 0.89164 1.83859 1.75164 1.17399 1.34154 1.21671 1.44920 0.82315 1.00383 0.88519 1.26300 0.95086 1.03693 0.95417 1.70087 1.40572 1.35995 1.07199 0.84783 0.79479 0.74794 0.78133 1.18848 1.19392 1.18465 0.89867 0.91843 0.91474 0.73949 0.85500 0.83731 0.74191 0.82570 0.82824 0.84637 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.13 71.23 0.72 -0.77 16 2 C -0.01 -0.15 7.09 41.39 0.29 0.15 16 3 N -0.54 -14.63 11.25 -188.32 -2.12 -16.75 16 4 C 0.19 3.85 13.04 180.26 2.35 6.20 16 5 N -0.56 -10.59 6.15 -186.50 -1.15 -11.74 16 6 H 0.43 5.61 8.96 -92.71 -0.83 4.77 16 7 C -0.02 -0.36 5.73 40.95 0.23 -0.13 16 8 C -0.05 -1.12 5.81 29.10 0.17 -0.95 16 9 C 0.51 15.10 7.63 87.66 0.67 15.77 16 10 O -0.55 -19.76 13.20 -3.07 -0.04 -19.80 16 11 N -0.65 -21.61 5.29 -303.03 -1.60 -23.21 16 12 C 0.07 2.66 6.45 38.23 0.25 2.91 16 13 C -0.06 -2.26 8.72 22.37 0.19 -2.06 16 14 C -0.20 -7.07 10.02 22.33 0.22 -6.85 16 15 C 0.12 4.55 7.29 22.37 0.16 4.71 16 16 F -0.15 -5.31 17.26 44.97 0.78 -4.53 16 17 C -0.26 -11.35 9.14 22.42 0.20 -11.15 16 18 C 0.13 5.88 6.66 22.69 0.15 6.03 16 19 O -0.20 -10.38 9.17 -22.67 -0.21 -10.59 16 20 C -0.42 -21.96 9.49 67.92 0.64 -21.32 16 21 H 0.10 4.81 5.20 -2.91 -0.02 4.80 16 22 C 0.00 -0.25 5.49 84.83 0.47 0.22 16 23 N -0.90 -48.72 13.67 21.61 0.30 -48.42 16 24 Si 1.01 39.50 29.55 68.60 2.03 41.53 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 26 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 27 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.07 1.45 7.89 -2.39 -0.02 1.44 16 31 H 0.24 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.14 2.22 8.03 -2.38 -0.02 2.20 16 34 H 0.42 13.48 8.34 -92.71 -0.77 12.70 16 35 H 0.16 5.47 5.79 -2.91 -0.02 5.46 16 36 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.14 5.92 5.63 -2.91 -0.02 5.91 16 38 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -70.75 338.28 4.27 -66.48 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.45 Total: 34.27 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 6.73 Total: -7.24 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -4.57 Total: -100.12 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.25 Total: -30.39 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.78 Total: -4.53 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -70.75 4.27 -66.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362243221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.906 kcal (2) G-P(sol) polarization free energy of solvation -70.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds