Wall clock time and date at job start Tue Mar 31 2020 12:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30851 * 125.41541 * 2 1 4 4 C 1.33317 * 109.68540 * 179.88318 * 3 2 1 5 5 C 1.50706 * 126.10869 * 180.14931 * 4 3 2 6 6 C 1.36682 * 107.78819 * 0.37247 * 4 3 2 7 7 C 1.46734 * 126.84715 * 179.79221 * 6 4 3 8 8 O 1.21700 * 120.00200 * 0.02562 * 7 6 4 9 9 N 1.34771 * 119.99776 * 179.97438 * 7 6 4 10 10 C 1.40006 * 119.99973 * 175.62871 * 9 7 6 11 11 C 1.38727 * 120.08030 * 34.60841 * 10 9 7 12 12 C 1.38192 * 120.01649 * 179.76853 * 11 10 9 13 13 C 1.38550 * 120.17959 * 0.51633 * 12 11 10 14 14 F 1.35096 * 119.91830 * 179.75967 * 13 12 11 15 15 C 1.38346 * 120.15785 * 359.74330 * 13 12 11 16 16 C 1.38737 * 119.98192 * 359.97438 * 15 13 12 17 17 O 1.35767 * 120.08972 * 179.97438 * 16 15 13 18 18 C 1.34802 * 117.00222 * 5.43269 * 17 16 15 19 19 H 1.08008 * 119.99871 * 354.95000 * 18 17 16 20 20 C 1.38638 * 120.00341 * 174.94855 * 18 17 16 21 21 N 1.31572 * 119.99673 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00000 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47183 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47145 * 120.00526 * 22 20 18 25 25 H 1.48503 * 109.46989 * 240.00220 * 22 20 18 26 26 N 1.34508 * 125.41696 * 180.30268 * 2 1 3 27 27 H 0.97000 * 126.47620 * 359.94649 * 26 2 1 28 28 H 1.08993 * 109.47541 * 269.69458 * 1 2 3 29 29 H 1.09007 * 109.46957 * 149.69074 * 1 2 3 30 30 H 1.08996 * 109.47448 * 29.69960 * 1 2 3 31 31 H 1.09000 * 109.47005 * 270.26454 * 5 4 3 32 32 H 1.09006 * 109.47130 * 30.26152 * 5 4 3 33 33 H 1.08995 * 109.47382 * 150.26206 * 5 4 3 34 34 H 0.96999 * 120.00249 * 355.62274 * 9 7 6 35 35 H 1.07998 * 119.99001 * 0.02562 * 11 10 9 36 36 H 1.07999 * 119.90748 * 180.23246 * 12 11 10 37 37 H 1.08002 * 120.00973 * 180.02562 * 15 13 12 38 38 H 0.97001 * 119.99733 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7050 0.0026 5 6 4.7335 1.6362 0.0066 6 6 3.5976 -0.6610 -0.0042 7 6 4.8027 -1.4981 -0.0086 8 8 5.9038 -0.9798 -0.0058 9 7 4.6902 -2.8411 -0.0147 10 6 5.8364 -3.6392 -0.1113 11 6 7.0201 -3.2313 0.4863 12 6 8.1494 -4.0224 0.3942 13 6 8.1067 -5.2188 -0.3032 14 9 9.2152 -5.9857 -0.3940 15 6 6.9317 -5.6301 -0.9066 16 6 5.7924 -4.8439 -0.8134 17 8 4.6382 -5.2451 -1.4050 18 6 4.6338 -6.4684 -1.9714 19 1 5.5447 -7.0474 -2.0132 20 6 3.4603 -6.9834 -2.5002 21 7 2.3509 -6.2779 -2.4497 22 14 3.4545 -8.6782 -3.2855 23 1 4.8191 -9.2600 -3.2175 24 1 2.5041 -9.5575 -2.5584 25 1 3.0359 -8.5642 -4.7058 26 7 2.2865 -1.0962 -0.0058 27 1 1.9851 -2.0181 -0.0099 28 1 -0.3634 -0.0055 1.0276 29 1 -0.3633 -0.8873 -0.5187 30 1 -0.3634 0.8926 -0.5091 31 1 5.0187 1.8657 -1.0201 32 1 4.4695 2.5579 0.5251 33 1 5.5693 1.1584 0.5177 34 1 3.8151 -3.2548 0.0479 35 1 7.0578 -2.2973 1.0272 36 1 9.0689 -3.7050 0.8633 37 1 6.9010 -6.5633 -1.4493 38 1 1.5298 -6.6380 -2.8200 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362244867.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:22 Heat of formation + Delta-G solvation = -29.733695 kcal Electronic energy + Delta-G solvation = -26063.492302 eV Core-core repulsion = 22015.138011 eV Total energy + Delta-G solvation = -4048.354291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.33655 -42.26893 -40.01980 -38.53297 -36.41679 -34.45741 -33.20803 -32.51592 -32.17959 -29.58376 -29.16228 -28.63746 -26.31643 -25.59074 -22.95082 -22.06558 -21.40826 -20.69984 -19.76393 -18.48908 -18.41664 -17.69929 -16.73474 -16.01508 -15.85149 -15.34124 -15.25867 -15.02287 -14.55341 -14.38580 -14.23860 -13.88106 -13.70100 -13.61997 -13.34272 -13.14531 -13.00624 -12.55424 -12.47549 -12.38451 -12.32020 -11.97300 -11.75850 -11.46686 -11.07311 -10.83612 -10.59920 -10.33606 -9.98068 -9.90949 -9.81669 -9.50758 -9.06960 -8.38441 -7.98817 -7.24749 -6.72218 -4.29637 1.24546 1.81588 2.02105 2.79006 2.86898 2.98513 3.01190 3.06501 3.30197 3.45463 3.76434 4.21311 4.23474 4.74500 4.78492 4.84956 4.99309 5.01323 5.10414 5.29832 5.34282 5.50200 5.64778 5.66135 5.75420 5.87365 5.92089 6.02718 6.05210 6.17309 6.44152 6.62215 6.65500 6.80621 6.83693 6.91456 7.08219 7.19827 7.52891 7.66363 7.73230 7.93880 8.32841 8.74785 9.34424 10.45134 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010155 B = 0.004633 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.674788 B = 6042.191576 C = 8618.205807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.240 3.760 3 N -0.498 5.498 4 C 0.097 3.903 5 C -0.075 4.075 6 C -0.088 4.088 7 C 0.592 3.408 8 O -0.519 6.519 9 N -0.647 5.647 10 C 0.055 3.945 11 C -0.046 4.046 12 C -0.228 4.228 13 C 0.133 3.867 14 F -0.150 7.150 15 C -0.258 4.258 16 C 0.160 3.840 17 O -0.169 6.169 18 C -0.392 4.392 19 H 0.096 0.904 20 C 0.044 3.956 21 N -0.861 5.861 22 Si 0.943 3.057 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.274 1.274 26 N -0.548 5.548 27 H 0.426 0.574 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.408 0.592 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.102 7.541 5.412 9.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.023 4.023 3 N -0.219 5.219 4 C -0.038 4.038 5 C -0.133 4.133 6 C -0.203 4.203 7 C 0.380 3.620 8 O -0.396 6.396 9 N -0.290 5.290 10 C -0.039 4.039 11 C -0.066 4.066 12 C -0.249 4.249 13 C 0.114 3.886 14 F -0.129 7.129 15 C -0.279 4.279 16 C 0.104 3.896 17 O -0.072 6.072 18 C -0.468 4.468 19 H 0.113 0.887 20 C -0.161 4.161 21 N -0.496 5.496 22 Si 0.768 3.232 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.200 1.200 26 N -0.154 5.154 27 H 0.265 0.735 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.243 0.757 35 H 0.161 0.839 36 H 0.143 0.857 37 H 0.161 0.839 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.040 8.771 5.278 10.438 hybrid contribution -0.206 -2.717 -0.574 2.784 sum -2.246 6.054 4.703 7.989 Atomic orbital electron populations 1.20310 0.84266 1.04689 1.03958 1.23375 0.95814 0.81497 1.01656 1.70072 1.01610 1.28276 1.21987 1.21035 0.93156 0.90151 0.99476 1.20278 0.93058 0.96914 1.03034 1.20825 0.83697 0.95341 1.20471 1.16821 0.87144 0.81165 0.76878 1.90768 1.25516 1.72891 1.50380 1.42942 1.09345 1.04996 1.71713 1.16821 0.88489 0.92802 1.05826 1.20671 0.90208 0.99083 0.96660 1.20505 1.00002 0.95856 1.08499 1.17477 0.82258 0.89983 0.98926 1.91419 1.51637 1.75061 1.94748 1.20864 0.91886 1.04698 1.10435 1.18818 0.87482 0.92420 0.90905 1.83909 1.28069 1.34129 1.61119 1.21427 0.97426 0.90942 1.36997 0.88669 1.25289 0.93995 0.99948 0.96910 1.70000 0.99887 1.37292 1.42381 0.85596 0.79110 0.79765 0.78765 1.18877 1.19959 1.19977 1.43258 1.06003 1.10544 1.55574 0.73463 0.89661 0.90119 0.88762 0.90797 0.91262 0.89194 0.75678 0.83896 0.85718 0.83855 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.51 36.01 0.38 -0.21 16 2 C 0.24 3.03 8.12 -155.61 -1.26 1.77 16 3 N -0.50 -7.46 11.20 -6.84 -0.08 -7.54 16 4 C 0.10 1.50 7.15 -82.51 -0.59 0.91 16 5 C -0.08 -1.01 9.88 36.01 0.36 -0.65 16 6 C -0.09 -1.38 7.07 -82.15 -0.58 -1.96 16 7 C 0.59 10.39 7.63 -12.83 -0.10 10.29 16 8 O -0.52 -9.83 12.23 5.19 0.06 -9.77 16 9 N -0.65 -11.66 5.18 -10.88 -0.06 -11.72 16 10 C 0.05 1.10 6.33 -83.47 -0.53 0.57 16 11 C -0.05 -0.85 8.69 -39.42 -0.34 -1.19 16 12 C -0.23 -4.09 10.02 -39.48 -0.40 -4.48 16 13 C 0.13 2.58 7.29 -39.43 -0.29 2.30 16 14 F -0.15 -2.79 17.26 2.25 0.04 -2.75 16 15 C -0.26 -5.47 9.14 -39.36 -0.36 -5.83 16 16 C 0.16 3.57 6.67 -38.93 -0.26 3.31 16 17 O -0.17 -4.27 9.32 0.07 0.00 -4.27 16 18 C -0.39 -10.02 9.49 30.88 0.29 -9.73 16 19 H 0.10 2.30 5.20 -52.48 -0.27 2.03 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -22.57 13.67 55.48 0.76 -21.81 16 22 Si 0.94 19.13 29.55 -169.99 -5.02 14.10 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 N -0.55 -7.17 6.07 -7.02 -0.04 -7.22 16 27 H 0.43 4.75 8.32 -40.82 -0.34 4.41 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.25 6.48 -51.93 -0.34 0.92 16 34 H 0.41 6.91 7.82 -40.82 -0.32 6.59 16 35 H 0.14 2.53 6.19 -52.49 -0.32 2.20 16 36 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.14 3.04 5.64 -52.49 -0.30 2.74 16 38 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -30.15 336.02 -6.61 -36.76 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -3.56 Total: 13.07 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.77 Total: -3.92 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.58 Total: -48.29 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.06 Total: -14.04 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.15 -6.61 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362244867.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.024 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds