Wall clock time and date at job start Tue Mar 31 2020 12:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30300 * 126.33972 * 2 1 4 4 N 1.28526 * 110.07607 * 180.02562 * 3 2 1 5 5 C 1.31280 * 109.85547 * 359.97438 * 4 3 2 6 6 S 1.76199 * 126.48194 * 180.02562 * 5 4 3 7 7 C 1.81002 * 100.00182 * 0.02838 * 6 5 4 8 8 C 1.52998 * 109.47085 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47558 * 60.00200 * 8 7 6 10 10 O 1.42903 * 109.46872 * 299.99495 * 8 7 6 11 11 C 1.50704 * 109.46615 * 180.02562 * 8 7 6 12 12 H 1.07991 * 120.00439 * 359.97438 * 11 8 7 13 13 C 1.37885 * 119.99466 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00156 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99470 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.46971 * 89.99952 * 15 13 11 17 17 H 1.48499 * 109.46899 * 209.99762 * 15 13 11 18 18 H 1.48490 * 109.47441 * 330.00051 * 15 13 11 19 19 N 1.36538 * 107.03572 * 0.26420 * 5 4 3 20 20 C 1.46500 * 127.14312 * 179.73685 * 19 5 4 21 21 C 1.50700 * 109.47042 * 90.02823 * 20 19 5 22 22 C 1.38233 * 119.99830 * 269.72273 * 21 20 19 23 23 C 1.38232 * 120.00036 * 179.76533 * 22 21 20 24 24 C 1.38237 * 119.99723 * 0.51220 * 23 22 21 25 25 C 1.38233 * 120.00299 * 359.74091 * 24 23 22 26 26 C 1.38235 * 119.99804 * 0.02562 * 25 24 23 27 27 H 1.08999 * 109.47339 * 89.97265 * 1 2 3 28 28 H 1.09001 * 109.46966 * 209.97257 * 1 2 3 29 29 H 1.09000 * 109.46805 * 329.97119 * 1 2 3 30 30 H 1.09005 * 109.46889 * 299.99975 * 7 6 5 31 31 H 1.09000 * 109.47231 * 59.99947 * 7 6 5 32 32 H 0.96705 * 114.00150 * 300.00595 * 10 8 7 33 33 H 0.97000 * 119.99592 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.46750 * 210.02520 * 20 19 5 35 35 H 1.08997 * 109.47529 * 330.02094 * 20 19 5 36 36 H 1.08000 * 119.99680 * 0.02562 * 22 21 20 37 37 H 1.08002 * 120.00445 * 180.23441 * 23 22 21 38 38 H 1.08006 * 119.99833 * 179.72686 * 24 23 22 39 39 H 1.07992 * 120.00465 * 179.97438 * 25 24 23 40 40 H 1.07998 * 120.00264 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5130 0.6896 -0.0005 5 6 3.5952 -0.6206 -0.0004 6 16 5.0748 -1.5774 -0.0003 7 6 6.3067 -0.2513 0.0004 8 6 7.7107 -0.8595 -0.0001 9 1 7.8398 -1.4748 -0.8904 10 8 7.8801 -1.6675 1.1663 11 6 8.7363 0.2447 0.0010 12 1 8.4186 1.2769 0.0016 13 6 10.0804 -0.0629 0.0014 14 7 10.4673 -1.3198 0.0012 15 14 11.3517 1.3058 0.0021 16 1 11.6881 1.6681 1.4025 17 1 12.5771 0.8434 -0.6976 18 1 10.8005 2.4938 -0.6977 19 7 2.3174 -1.1016 -0.0057 20 6 1.9010 -2.5061 -0.0129 21 6 1.7540 -2.9938 1.4054 22 6 2.8327 -3.5630 2.0558 23 6 2.6993 -4.0059 3.3584 24 6 1.4841 -3.8893 4.0070 25 6 0.4039 -3.3249 3.3548 26 6 0.5387 -2.8775 2.0538 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 6.1778 0.3649 -0.8895 31 1 6.1774 0.3644 0.8905 32 1 7.7787 -1.1842 1.9977 33 1 11.4128 -1.5362 0.0010 34 1 0.9459 -2.5992 -0.5300 35 1 2.6524 -3.1053 -0.5272 36 1 3.7810 -3.6578 1.5477 37 1 3.5431 -4.4472 3.8680 38 1 1.3786 -4.2394 5.0233 39 1 -0.5456 -3.2341 3.8613 40 1 -0.3054 -2.4369 1.5440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364264750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:33 Heat of formation + Delta-G solvation = 25.994218 kcal Electronic energy + Delta-G solvation = -23721.219766 eV Core-core repulsion = 20241.495195 eV Total energy + Delta-G solvation = -3479.724572 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.94523 -40.22030 -37.94851 -36.42250 -34.31000 -33.43107 -32.38758 -31.86314 -31.64945 -28.93203 -27.61264 -27.32856 -24.14982 -23.53236 -22.94892 -22.78474 -21.55453 -19.31720 -18.81505 -18.05897 -17.50993 -16.93895 -16.71645 -16.29607 -16.18028 -16.16190 -15.99205 -15.53880 -15.12212 -14.47110 -14.38086 -14.23764 -13.92568 -13.70344 -13.50508 -13.43359 -13.35992 -13.27491 -12.86408 -12.78825 -12.65312 -12.42318 -12.10552 -11.98632 -11.81597 -11.39350 -11.31783 -11.10838 -10.79404 -10.74935 -10.35637 -9.87424 -9.86152 -8.64620 -8.18787 -6.45145 0.01527 0.25358 0.45105 0.61139 1.13701 1.41137 1.42116 1.53225 1.70248 1.71201 2.38606 2.85186 3.07739 3.42607 3.49564 3.56700 3.88349 4.03783 4.05508 4.07058 4.18545 4.22709 4.24308 4.29594 4.46720 4.54428 4.60462 4.67007 4.83759 4.89354 4.92727 4.98574 5.02532 5.13039 5.47984 5.48260 5.55338 5.58413 5.63551 5.78390 5.95185 6.03650 6.63070 7.25864 7.42118 7.56751 8.85706 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016875 B = 0.003441 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.874839 B = 8134.892857 C = 9306.539895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.191 3.809 3 N -0.338 5.338 4 N -0.337 5.337 5 C 0.149 3.851 6 S 0.019 5.981 7 C -0.103 4.103 8 C 0.250 3.750 9 H 0.039 0.961 10 O -0.569 6.569 11 C -0.586 4.586 12 H 0.059 0.941 13 C 0.033 3.967 14 N -0.893 5.893 15 Si 0.962 3.038 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.268 1.268 19 N -0.455 5.455 20 C 0.142 3.858 21 C -0.131 4.131 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.114 4.114 25 C -0.127 4.127 26 C -0.101 4.101 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.359 0.641 33 H 0.265 0.735 34 H 0.147 0.853 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.346 -7.041 4.159 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 N -0.177 5.177 4 N -0.181 5.181 5 C -0.227 4.227 6 S 0.248 5.752 7 C -0.252 4.252 8 C 0.190 3.810 9 H 0.057 0.943 10 O -0.373 6.373 11 C -0.625 4.625 12 H 0.077 0.923 13 C -0.171 4.171 14 N -0.530 5.530 15 Si 0.786 3.214 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.192 1.192 19 N -0.149 5.149 20 C 0.021 3.979 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.154 4.154 24 C -0.132 4.132 25 C -0.145 4.145 26 C -0.119 4.119 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.205 0.795 33 H 0.074 0.926 34 H 0.164 0.836 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.559 -7.371 3.662 25.901 hybrid contribution 0.802 1.210 0.286 1.479 sum -23.757 -6.161 3.948 24.858 Atomic orbital electron populations 1.20584 0.79687 1.06147 1.05920 1.26017 0.98622 0.81446 1.01859 1.73826 0.96654 1.26242 1.21004 1.74619 1.13150 1.08279 1.22002 1.27151 0.92506 0.95321 1.07674 1.85417 0.88732 1.08765 1.92293 1.24410 0.96983 0.98493 1.05330 1.18951 0.86246 0.89819 0.85939 0.94334 1.86516 1.94757 1.40101 1.15900 1.21851 0.92011 0.93366 1.55286 0.92291 1.25832 1.00510 0.97704 0.93013 1.70185 1.16444 1.18744 1.47598 0.85525 0.78121 0.79196 0.78569 1.19672 1.20466 1.19249 1.46733 1.03585 1.09262 1.55274 1.21139 1.05095 0.76121 0.95502 1.19950 0.95350 1.02085 0.95868 1.21344 0.98269 0.97624 0.95875 1.21420 0.98889 1.00373 0.94690 1.21585 0.92705 0.98042 1.00864 1.21522 0.99937 0.98220 0.94789 1.21403 0.96681 0.98472 0.95393 0.87271 0.87669 0.88002 0.90098 0.90320 0.79543 0.92626 0.83563 0.87778 0.86727 0.85186 0.83845 0.83006 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.80 10.09 71.24 0.72 -0.08 16 2 C 0.19 4.98 8.07 137.63 1.11 6.09 16 3 N -0.34 -12.31 12.18 -49.52 -0.60 -12.91 16 4 N -0.34 -13.88 11.60 -56.85 -0.66 -14.54 16 5 C 0.15 5.34 8.07 179.55 1.45 6.79 16 6 S 0.02 0.68 20.99 -56.49 -1.19 -0.50 16 7 C -0.10 -4.51 4.87 71.98 0.35 -4.16 16 8 C 0.25 12.81 2.87 29.85 0.09 12.90 16 9 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 10 O -0.57 -28.91 12.32 -148.98 -1.84 -30.75 16 11 C -0.59 -32.42 8.76 25.60 0.22 -32.20 16 12 H 0.06 3.22 7.74 -2.92 -0.02 3.20 16 13 C 0.03 1.84 5.40 84.66 0.46 2.30 16 14 N -0.89 -52.51 12.84 21.45 0.28 -52.23 16 15 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 N -0.45 -12.10 2.79 -517.18 -1.45 -13.55 16 20 C 0.14 2.55 5.88 85.63 0.50 3.05 16 21 C -0.13 -2.48 5.46 -19.87 -0.11 -2.58 16 22 C -0.11 -2.55 9.70 22.27 0.22 -2.34 16 23 C -0.14 -2.74 10.05 22.27 0.22 -2.52 16 24 C -0.11 -1.80 10.05 22.27 0.22 -1.58 16 25 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 26 C -0.10 -1.40 9.54 22.27 0.21 -1.19 16 27 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 0.66 5.81 -2.39 -0.01 0.65 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 3.66 8.14 -2.39 -0.02 3.64 16 31 H 0.08 3.52 8.14 -2.40 -0.02 3.50 16 32 H 0.36 16.39 9.04 -74.05 -0.67 15.72 16 33 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.15 1.37 7.85 -2.39 -0.02 1.36 16 35 H 0.10 1.96 7.80 -2.39 -0.02 1.94 16 36 H 0.11 2.93 7.59 -2.91 -0.02 2.91 16 37 H 0.13 2.40 8.06 -2.91 -0.02 2.37 16 38 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.15 1.07 6.12 -2.91 -0.02 1.06 16 Total: -1.00 -75.67 357.59 2.86 -72.81 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.40 Total: 23.13 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 5.89 Total: -16.99 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -2.43 Total: -93.23 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.84 Total: -30.75 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -1.19 Total: -0.50 kcal Total: -75.67 2.86 -72.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364264750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.804 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds