Wall clock time and date at job start Tue Mar 31 2020 12:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35361 * 127.24816 * 2 1 4 4 N 1.35041 * 107.23379 * 179.85235 * 3 2 1 5 5 C 1.46499 * 124.88579 * 180.16829 * 4 3 2 6 6 N 1.28467 * 110.22731 * 0.43753 * 4 3 2 7 7 C 1.31816 * 110.07530 * 359.73277 * 6 4 3 8 8 C 1.47690 * 126.52031 * 180.02562 * 7 6 4 9 9 O 1.21583 * 119.99830 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99689 * 359.97429 * 8 7 6 11 11 C 1.40015 * 119.99680 * 175.62506 * 10 8 7 12 12 C 1.38727 * 120.07778 * 34.60653 * 11 10 8 13 13 C 1.38192 * 120.01727 * 179.72193 * 12 11 10 14 14 C 1.38557 * 120.17659 * 0.55367 * 13 12 11 15 15 F 1.35099 * 119.92374 * 179.74560 * 14 13 12 16 16 C 1.38342 * 120.15755 * 359.71675 * 14 13 12 17 17 C 1.38737 * 119.98164 * 0.02562 * 16 14 13 18 18 O 1.35768 * 120.09163 * 179.97438 * 17 16 14 19 19 C 1.34811 * 117.00095 * 5.42925 * 18 17 16 20 20 H 1.07999 * 119.99682 * 354.94864 * 19 18 17 21 21 C 1.38631 * 120.00040 * 174.95165 * 19 18 17 22 22 N 1.31570 * 120.00190 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99899 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46985 * 89.99862 * 23 21 19 25 25 H 1.48499 * 109.46876 * 209.99569 * 23 21 19 26 26 H 1.48498 * 109.47043 * 330.00064 * 23 21 19 27 27 H 1.09002 * 109.46892 * 269.67601 * 1 2 3 28 28 H 1.09004 * 109.46915 * 149.68180 * 1 2 3 29 29 H 1.08994 * 109.47561 * 29.67652 * 1 2 3 30 30 H 1.08002 * 126.38576 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.46730 * 270.28387 * 5 4 3 32 32 H 1.09003 * 109.46864 * 30.28360 * 5 4 3 33 33 H 1.08997 * 109.46925 * 150.28081 * 5 4 3 34 34 H 0.96997 * 120.00208 * 355.61906 * 10 8 7 35 35 H 1.07994 * 119.99401 * 359.97438 * 12 11 10 36 36 H 1.07993 * 119.91072 * 180.25119 * 13 12 11 37 37 H 1.08001 * 120.01267 * 180.02562 * 16 14 13 38 38 H 0.97008 * 120.00238 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6153 0.0033 5 6 4.7937 1.4577 0.0080 6 7 3.5999 -0.6693 -0.0039 7 6 2.3636 -1.1264 -0.0064 8 6 1.9508 -2.5444 -0.0138 9 8 0.7699 -2.8338 -0.0150 10 7 2.8831 -3.5176 -0.0193 11 6 2.4944 -4.8600 0.0662 12 6 1.3159 -5.2820 -0.5319 13 6 0.9363 -6.6083 -0.4516 14 6 1.7242 -7.5179 0.2352 15 9 1.3455 -8.8123 0.3148 16 6 2.8979 -7.1039 0.8391 17 6 3.2880 -5.7750 0.7581 18 8 4.4392 -5.3662 1.3504 19 6 5.2144 -6.3197 1.9049 20 1 4.8712 -7.3432 1.9374 21 6 6.4520 -5.9864 2.4333 22 7 6.8702 -4.7396 2.3932 23 14 7.5263 -7.3077 3.2009 24 1 8.4066 -7.8965 2.1598 25 1 8.3605 -6.7067 4.2724 26 1 6.6660 -8.3703 3.7805 27 1 -0.3633 -0.0058 1.0277 28 1 -0.3633 -0.8872 -0.5188 29 1 -0.3634 0.8928 -0.5088 30 1 2.0220 2.1138 0.0004 31 1 5.0911 1.6720 -1.0185 32 1 4.5791 2.3920 0.5267 33 1 5.6025 0.9358 0.5193 34 1 3.8234 -3.2881 -0.0825 35 1 0.6971 -4.5746 -1.0638 36 1 0.0206 -6.9357 -0.9213 37 1 3.5105 -7.8150 1.3735 38 1 7.7364 -4.5064 2.7626 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001416808198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:48 Heat of formation + Delta-G solvation = 3.836341 kcal Electronic energy + Delta-G solvation = -26023.773356 eV Core-core repulsion = 21976.874771 eV Total energy + Delta-G solvation = -4046.898585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.22136 -42.60225 -39.88326 -38.39607 -36.26969 -34.09048 -33.85696 -32.38341 -31.84277 -29.46071 -28.73262 -27.91958 -26.37855 -25.45945 -23.15202 -22.11707 -21.32746 -20.56811 -19.63540 -18.30322 -17.94324 -17.29372 -16.50940 -16.30589 -16.27078 -15.27143 -15.20199 -14.93613 -14.42412 -14.25730 -14.08775 -13.71170 -13.59278 -13.48925 -13.36001 -13.19672 -13.06486 -12.61593 -12.45245 -12.29557 -12.14195 -11.96690 -11.63055 -11.33296 -10.93418 -10.69698 -10.64501 -10.52508 -9.78181 -9.67008 -9.35894 -9.18929 -8.93111 -8.69056 -7.84822 -7.07834 -6.56111 -4.14514 1.59697 1.97042 2.15826 2.22080 2.47889 3.08519 3.09652 3.14191 3.54144 3.71449 3.88130 4.34628 4.39674 4.72292 4.88456 4.90591 4.94611 4.99977 5.15472 5.21613 5.27430 5.35878 5.59064 5.64102 5.77970 5.86233 6.01885 6.08286 6.22083 6.28186 6.55261 6.59382 6.77577 6.81289 6.95025 6.97879 7.09376 7.23342 7.67377 7.82978 7.88194 8.11040 8.60147 8.88785 9.50868 10.60315 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.004630 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.045188 B = 6046.515350 C = 8617.642617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.145 4.145 3 C -0.030 4.030 4 N -0.284 5.284 5 C 0.087 3.913 6 N -0.249 5.249 7 C -0.013 4.013 8 C 0.601 3.399 9 O -0.528 6.528 10 N -0.635 5.635 11 C 0.057 3.943 12 C -0.048 4.048 13 C -0.230 4.230 14 C 0.131 3.869 15 F -0.151 7.151 16 C -0.259 4.259 17 C 0.160 3.840 18 O -0.165 6.165 19 C -0.393 4.393 20 H 0.095 0.905 21 C 0.043 3.957 22 N -0.856 5.856 23 Si 0.942 3.058 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.266 1.266 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.179 0.821 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.420 0.580 35 H 0.143 0.857 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 11.870 -5.238 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.156 4.156 3 C -0.172 4.172 4 N -0.072 5.072 5 C -0.053 4.053 6 N -0.085 5.085 7 C -0.173 4.173 8 C 0.387 3.613 9 O -0.404 6.404 10 N -0.279 5.279 11 C -0.037 4.037 12 C -0.069 4.069 13 C -0.250 4.250 14 C 0.111 3.889 15 F -0.130 7.130 16 C -0.280 4.280 17 C 0.104 3.896 18 O -0.068 6.068 19 C -0.469 4.469 20 H 0.112 0.888 21 C -0.162 4.162 22 N -0.490 5.490 23 Si 0.766 3.234 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.190 1.190 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.196 0.804 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.258 0.742 35 H 0.160 0.840 36 H 0.141 0.859 37 H 0.161 0.839 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.479 11.768 -5.096 13.583 hybrid contribution 0.391 -0.415 0.534 0.782 sum -4.088 11.352 -4.562 12.899 Atomic orbital electron populations 1.20159 0.88127 1.02833 1.02352 1.20356 0.97408 0.90364 1.07432 1.22570 0.83790 1.00369 1.10486 1.45290 1.07038 1.03813 1.51091 1.22172 0.85088 0.93707 1.04336 1.73656 1.23162 0.93563 1.18128 1.21779 0.89499 0.94792 1.11264 1.16870 0.85334 0.82529 0.76575 1.90708 1.16783 1.82319 1.50581 1.42969 1.11048 1.03564 1.70285 1.16888 0.98488 0.82759 1.05547 1.20664 0.94684 0.94745 0.96788 1.20473 1.02640 0.93086 1.08821 1.17464 0.94485 0.77722 0.99227 1.91409 1.91286 1.35482 1.94851 1.20841 0.99498 0.97044 1.10648 1.18834 0.88861 0.91011 0.90930 1.83957 1.26117 1.35501 1.61176 1.21363 0.98189 0.89793 1.37567 0.88792 1.25293 0.96275 0.97640 0.97004 1.70040 1.20054 1.16856 1.42028 0.85687 0.79495 0.79414 0.78764 1.19736 1.20207 1.19036 0.91535 0.89824 0.92263 0.80351 0.89792 0.88787 0.88180 0.74239 0.83968 0.85881 0.83948 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.93 36.00 0.36 -0.58 16 2 C -0.15 -2.07 6.25 -104.40 -0.65 -2.72 16 3 C -0.03 -0.34 11.40 -17.17 -0.20 -0.53 16 4 N -0.28 -3.55 3.70 -68.13 -0.25 -3.80 16 5 C 0.09 0.65 11.31 59.85 0.68 1.32 16 6 N -0.25 -4.15 11.67 33.42 0.39 -3.75 16 7 C -0.01 -0.23 7.13 -82.77 -0.59 -0.82 16 8 C 0.60 11.76 7.67 -12.40 -0.10 11.67 16 9 O -0.53 -10.73 12.53 5.29 0.07 -10.67 16 10 N -0.63 -13.14 5.18 -10.61 -0.06 -13.20 16 11 C 0.06 1.26 6.33 -83.47 -0.53 0.73 16 12 C -0.05 -0.96 8.69 -39.42 -0.34 -1.30 16 13 C -0.23 -4.36 10.02 -39.48 -0.40 -4.75 16 14 C 0.13 2.67 7.29 -39.43 -0.29 2.38 16 15 F -0.15 -2.94 17.26 2.25 0.04 -2.91 16 16 C -0.26 -5.81 9.14 -39.36 -0.36 -6.17 16 17 C 0.16 3.83 6.67 -38.93 -0.26 3.58 16 18 O -0.16 -4.48 9.32 0.05 0.00 -4.48 16 19 C -0.39 -10.62 9.49 30.88 0.29 -10.33 16 20 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 22 N -0.86 -23.93 13.67 55.48 0.76 -23.18 16 23 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.16 6.72 -51.93 -0.35 0.81 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.40 8.13 -51.93 -0.42 -0.02 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.42 8.82 8.30 -40.82 -0.34 8.48 16 35 H 0.14 2.69 6.19 -52.49 -0.32 2.36 16 36 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 37 H 0.14 3.17 5.64 -52.49 -0.30 2.87 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -32.42 338.18 -5.13 -37.55 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -3.68 Total: 10.83 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.48 Total: -6.48 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.84 Total: -43.93 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.07 Total: -15.15 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.42 -5.13 -37.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001416808198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.382 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds