Wall clock time and date at job start Tue Mar 31 2020 12:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32483 * 120.37309 * 2 1 4 4 C 1.32296 * 120.90012 * 179.97438 * 3 2 1 5 5 O 1.35460 * 119.16332 * 180.02562 * 4 3 2 6 6 N 1.32307 * 121.67212 * 359.71679 * 4 3 2 7 7 C 1.32757 * 120.65814 * 0.57386 * 6 4 3 8 8 O 1.35512 * 120.47582 * 179.71413 * 7 6 4 9 9 C 1.38189 * 120.37738 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.76353 * 359.97438 * 9 2 1 11 11 C 1.50704 * 109.46947 * 270.02891 * 10 9 2 12 12 O 1.21300 * 120.00405 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99823 * 180.02562 * 11 10 9 14 14 C 1.40597 * 120.00332 * 179.97438 * 13 11 10 15 15 C 1.40653 * 126.07617 * 359.69246 * 14 13 11 16 16 N 1.30907 * 108.38251 * 179.81833 * 15 14 13 17 17 N 1.40075 * 108.40860 * 0.43673 * 16 15 14 18 18 C 1.37319 * 126.06684 * 179.69993 * 17 16 15 19 19 H 1.08008 * 119.99638 * 180.02562 * 18 17 16 20 20 C 1.38987 * 120.00289 * 0.02562 * 18 17 16 21 21 N 1.31290 * 120.00330 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46925 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46987 * 119.99914 * 22 20 18 25 25 H 1.48496 * 109.47223 * 240.00501 * 22 20 18 26 26 C 1.35679 * 126.08638 * 179.97438 * 14 13 11 27 27 H 1.09005 * 109.46471 * 270.01793 * 1 2 3 28 28 H 1.08999 * 109.47220 * 30.01490 * 1 2 3 29 29 H 1.08995 * 109.47307 * 150.02192 * 1 2 3 30 30 H 0.96689 * 114.00048 * 89.99411 * 5 4 3 31 31 H 0.96700 * 114.00230 * 269.72399 * 8 7 6 32 32 H 1.08999 * 109.47154 * 30.02648 * 10 9 2 33 33 H 1.08996 * 109.47235 * 150.02828 * 10 9 2 34 34 H 0.97011 * 120.00270 * 359.97438 * 13 11 10 35 35 H 1.07994 * 125.80568 * 359.95674 * 15 14 13 36 36 H 0.96995 * 120.00770 * 179.97438 * 21 20 18 37 37 H 1.08001 * 126.24686 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1430 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1490 2.3441 0.0010 6 7 4.2049 0.0356 0.0066 7 6 3.5993 -1.1458 0.0010 8 8 4.3250 -2.2902 0.0015 9 6 2.2059 -1.1922 0.0005 10 6 1.4785 -2.5120 0.0017 11 6 1.2360 -2.9506 1.4230 12 8 1.6168 -2.2597 2.3444 13 7 0.5969 -4.1111 1.6703 14 6 0.3711 -4.5207 2.9962 15 6 0.7604 -3.8258 4.1554 16 7 0.3738 -4.5148 5.1992 17 7 -0.2661 -5.6770 4.7498 18 6 -0.8070 -6.6598 5.5417 19 1 -1.2796 -7.5190 5.0889 20 6 -0.7464 -6.5489 6.9258 21 7 -0.1723 -5.5043 7.4762 22 14 -1.4816 -7.8863 8.0030 23 1 -2.0646 -8.9486 7.1446 24 1 -0.4195 -8.4708 8.8606 25 1 -2.5447 -7.3029 8.8601 26 6 -0.2564 -5.6591 3.3850 27 1 -0.3632 0.0003 1.0278 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 4.3371 2.6891 0.8845 31 1 4.5361 -2.6225 -0.8818 32 1 0.5237 -2.4011 -0.5122 33 1 2.0826 -3.2602 -0.5114 34 1 0.2926 -4.6640 0.9334 35 1 1.2866 -2.8830 4.1801 36 1 -0.1303 -5.4267 8.4422 37 1 -0.6726 -6.4133 2.7336 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417620800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:32 Heat of formation + Delta-G solvation = 28.609826 kcal Electronic energy + Delta-G solvation = -25844.942505 eV Core-core repulsion = 21819.038140 eV Total energy + Delta-G solvation = -4025.904365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63733 -39.91149 -38.78328 -38.21703 -37.21800 -34.41979 -34.17143 -33.19964 -32.78152 -30.29132 -29.56936 -28.18476 -26.96582 -24.84459 -23.53739 -22.94103 -21.08152 -20.31826 -19.49317 -19.42081 -18.76910 -18.21367 -17.57640 -16.62323 -15.96134 -15.59094 -15.54499 -15.41763 -14.91830 -14.53498 -14.12657 -13.92313 -13.74231 -13.29818 -13.29788 -12.93607 -12.88886 -12.64779 -12.58521 -12.01513 -11.81654 -11.69944 -11.44423 -11.28257 -11.02745 -10.95141 -10.52822 -10.52089 -10.18737 -9.52945 -9.41584 -9.18812 -9.08157 -8.81314 -8.07318 -6.72142 -6.56859 -4.24200 0.51193 0.75874 2.67773 2.78750 3.00762 3.03874 3.10033 3.12262 3.47142 3.64469 3.66903 3.88484 4.05882 4.38270 4.40238 4.57528 4.71193 4.75876 5.00828 5.02144 5.12701 5.24298 5.30558 5.44337 5.61694 5.64078 5.99822 6.22151 6.43858 6.56725 6.88149 6.94062 7.09838 7.12589 7.21311 7.22660 7.79161 7.84774 8.14850 8.26532 8.61563 8.82701 9.36741 9.65915 10.39155 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027371 B = 0.002634 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.734262 B =10628.986538 C =10739.846577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.223 3.777 3 N -0.530 5.530 4 C 0.517 3.483 5 O -0.459 6.459 6 N -0.553 5.553 7 C 0.398 3.602 8 O -0.464 6.464 9 C -0.188 4.188 10 C -0.086 4.086 11 C 0.502 3.498 12 O -0.529 6.529 13 N -0.623 5.623 14 C -0.060 4.060 15 C -0.033 4.033 16 N -0.261 5.261 17 N -0.143 5.143 18 C -0.323 4.323 19 H 0.117 0.883 20 C 0.046 3.954 21 N -0.769 5.769 22 Si 0.934 3.066 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.084 4.084 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.413 0.587 31 H 0.405 0.595 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.397 0.603 35 H 0.174 0.826 36 H 0.274 0.726 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 5.719 -17.533 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.078 3.922 3 N -0.257 5.257 4 C 0.212 3.788 5 O -0.262 6.262 6 N -0.289 5.289 7 C 0.211 3.789 8 O -0.271 6.271 9 C -0.195 4.195 10 C -0.128 4.128 11 C 0.288 3.712 12 O -0.406 6.406 13 N -0.266 5.266 14 C -0.165 4.165 15 C -0.208 4.208 16 N -0.092 5.092 17 N 0.089 4.911 18 C -0.455 4.455 19 H 0.134 0.866 20 C -0.171 4.171 21 N -0.396 5.396 22 Si 0.758 3.242 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.235 4.235 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.273 0.727 31 H 0.265 0.735 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.230 0.770 35 H 0.191 0.809 36 H 0.085 0.915 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.374 7.160 -15.351 17.104 hybrid contribution -0.458 -1.620 -0.783 1.856 sum 1.916 5.540 -16.133 17.165 Atomic orbital electron populations 1.20921 0.87049 1.04133 1.04802 1.21253 0.97481 0.85855 0.87562 1.67840 1.08862 1.31078 1.17942 1.19780 0.83688 0.84520 0.90806 1.84682 1.76173 1.30796 1.34573 1.67364 1.43869 0.98640 1.19023 1.18844 0.86197 0.84595 0.89249 1.84840 1.73791 1.34741 1.33732 1.20944 0.93886 0.97136 1.07496 1.20402 1.01934 0.93899 0.96522 1.20017 0.79468 0.81523 0.90222 1.90626 1.50554 1.53912 1.45494 1.42455 1.56316 1.21299 1.06487 1.17251 1.16285 0.99584 0.83408 1.24088 1.05987 1.02058 0.88679 1.78264 1.16265 0.94862 1.19794 1.44559 1.31312 1.13129 1.02051 1.19912 1.37317 1.00106 0.88194 0.86577 1.25645 0.96181 0.97748 0.97560 1.70221 1.32291 1.25220 1.11878 0.85768 0.78882 0.79809 0.79706 1.18693 1.19921 1.19915 1.21254 1.14430 1.01374 0.86435 0.88535 0.89524 0.89600 0.72715 0.73537 0.87366 0.87673 0.77025 0.80916 0.91511 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.83 36.01 0.35 -0.68 16 2 C 0.22 2.76 6.82 -82.33 -0.56 2.20 16 3 N -0.53 -7.26 10.40 -11.01 -0.11 -7.38 16 4 C 0.52 7.13 8.71 -91.28 -0.80 6.34 16 5 O -0.46 -5.20 13.64 -18.07 -0.25 -5.45 16 6 N -0.55 -8.03 10.49 -14.79 -0.16 -8.18 16 7 C 0.40 5.31 7.81 -16.71 -0.13 5.18 16 8 O -0.46 -5.31 12.74 -18.23 -0.23 -5.55 16 9 C -0.19 -2.30 4.42 -104.20 -0.46 -2.77 16 10 C -0.09 -0.86 5.28 -29.03 -0.15 -1.02 16 11 C 0.50 8.00 7.79 -10.99 -0.09 7.91 16 12 O -0.53 -11.04 13.19 5.54 0.07 -10.97 16 13 N -0.62 -10.13 5.47 -10.00 -0.05 -10.19 16 14 C -0.06 -1.34 6.90 -83.84 -0.58 -1.91 16 15 C -0.03 -0.85 10.85 -17.03 -0.18 -1.04 16 16 N -0.26 -7.58 10.40 30.80 0.32 -7.26 16 17 N -0.14 -3.88 3.74 -11.41 -0.04 -3.93 16 18 C -0.32 -8.47 10.25 -14.82 -0.15 -8.62 16 19 H 0.12 2.71 7.83 -52.48 -0.41 2.30 16 20 C 0.05 1.18 5.50 -17.51 -0.10 1.08 16 21 N -0.77 -21.50 11.81 55.49 0.66 -20.85 16 22 Si 0.93 18.80 29.55 -169.99 -5.02 13.78 16 23 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 C -0.08 -1.93 11.49 -16.40 -0.19 -2.11 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.57 6.06 -51.93 -0.31 0.26 16 30 H 0.41 2.67 9.06 45.56 0.41 3.09 16 31 H 0.41 2.06 9.06 45.56 0.41 2.47 16 32 H 0.11 0.72 6.07 -51.93 -0.32 0.40 16 33 H 0.11 0.76 7.63 -51.93 -0.40 0.36 16 34 H 0.40 4.63 8.83 -40.81 -0.36 4.27 16 35 H 0.17 4.57 5.92 -52.49 -0.31 4.26 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.15 2.73 8.06 -52.49 -0.42 2.30 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -39.39 331.49 -4.54 -43.94 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -1.69 Total: 12.47 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -3.03 Total: 4.56 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.61 Total: -57.78 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.41 Total: -21.96 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -39.39 -4.54 -43.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417620800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.545 kcal (2) G-P(sol) polarization free energy of solvation -39.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds