Wall clock time and date at job start Tue Mar 31 2020 12:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32483 * 120.37309 * 2 1 4 4 C 1.32296 * 120.90012 * 179.97438 * 3 2 1 5 5 O 1.35460 * 119.16332 * 180.02562 * 4 3 2 6 6 N 1.32307 * 121.67212 * 359.71679 * 4 3 2 7 7 C 1.32757 * 120.65814 * 0.57386 * 6 4 3 8 8 O 1.35512 * 120.47582 * 179.71413 * 7 6 4 9 9 C 1.38189 * 120.37738 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.76353 * 359.97438 * 9 2 1 11 11 C 1.50704 * 109.46947 * 270.02891 * 10 9 2 12 12 O 1.21300 * 120.00405 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99823 * 180.02562 * 11 10 9 14 14 C 1.40597 * 120.00332 * 179.97438 * 13 11 10 15 15 C 1.40653 * 126.07617 * 359.69246 * 14 13 11 16 16 N 1.30907 * 108.38251 * 179.81833 * 15 14 13 17 17 N 1.40075 * 108.40860 * 0.43673 * 16 15 14 18 18 C 1.37319 * 126.06684 * 179.69993 * 17 16 15 19 19 H 1.08008 * 119.99638 * 180.02562 * 18 17 16 20 20 C 1.38987 * 120.00289 * 0.02562 * 18 17 16 21 21 N 1.31290 * 120.00330 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46925 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46987 * 119.99914 * 22 20 18 25 25 H 1.48496 * 109.47223 * 240.00501 * 22 20 18 26 26 C 1.35679 * 126.08638 * 179.97438 * 14 13 11 27 27 H 1.09005 * 109.46471 * 270.01793 * 1 2 3 28 28 H 1.08999 * 109.47220 * 30.01490 * 1 2 3 29 29 H 1.08995 * 109.47307 * 150.02192 * 1 2 3 30 30 H 0.96689 * 114.00048 * 89.99411 * 5 4 3 31 31 H 0.96700 * 114.00230 * 269.72399 * 8 7 6 32 32 H 1.08999 * 109.47154 * 30.02648 * 10 9 2 33 33 H 1.08996 * 109.47235 * 150.02828 * 10 9 2 34 34 H 0.97011 * 120.00270 * 359.97438 * 13 11 10 35 35 H 1.07994 * 125.80568 * 359.95674 * 15 14 13 36 36 H 0.96995 * 120.00770 * 179.97438 * 21 20 18 37 37 H 1.08001 * 126.24686 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1430 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1490 2.3441 0.0010 6 7 4.2049 0.0356 0.0066 7 6 3.5993 -1.1458 0.0010 8 8 4.3250 -2.2902 0.0015 9 6 2.2059 -1.1922 0.0005 10 6 1.4785 -2.5120 0.0017 11 6 1.2360 -2.9506 1.4230 12 8 1.6168 -2.2597 2.3444 13 7 0.5969 -4.1111 1.6703 14 6 0.3711 -4.5207 2.9962 15 6 0.7604 -3.8258 4.1554 16 7 0.3738 -4.5148 5.1992 17 7 -0.2661 -5.6770 4.7498 18 6 -0.8070 -6.6598 5.5417 19 1 -1.2796 -7.5190 5.0889 20 6 -0.7464 -6.5489 6.9258 21 7 -0.1723 -5.5043 7.4762 22 14 -1.4816 -7.8863 8.0030 23 1 -2.0646 -8.9486 7.1446 24 1 -0.4195 -8.4708 8.8606 25 1 -2.5447 -7.3029 8.8601 26 6 -0.2564 -5.6591 3.3850 27 1 -0.3632 0.0003 1.0278 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 4.3371 2.6891 0.8845 31 1 4.5361 -2.6225 -0.8818 32 1 0.5237 -2.4011 -0.5122 33 1 2.0826 -3.2602 -0.5114 34 1 0.2926 -4.6640 0.9334 35 1 1.2866 -2.8830 4.1801 36 1 -0.1303 -5.4267 8.4422 37 1 -0.6726 -6.4133 2.7336 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417620800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:32 Heat of formation + Delta-G solvation = -10.694560 kcal Electronic energy + Delta-G solvation = -25846.646871 eV Core-core repulsion = 21819.038140 eV Total energy + Delta-G solvation = -4027.608731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.58338 -41.61938 -40.19069 -39.21090 -38.11052 -35.90242 -35.26589 -34.91621 -33.77813 -32.21132 -30.56011 -29.62333 -28.19215 -26.64428 -24.57379 -23.88266 -22.83567 -21.81663 -21.14030 -20.38068 -19.69807 -19.32485 -19.07180 -17.93272 -17.37437 -17.04834 -16.86077 -16.45803 -16.17671 -15.87137 -15.37271 -15.13651 -15.02459 -14.77289 -14.62180 -14.44596 -13.75056 -13.54441 -13.46691 -13.43091 -13.25844 -12.97299 -12.83645 -12.82367 -12.57721 -12.02321 -11.93559 -11.80136 -11.48392 -10.99593 -10.83168 -10.73159 -10.41074 -10.13525 -10.07507 -8.47491 -8.45011 -6.21778 -0.42816 -0.16440 1.25110 1.40911 1.57214 1.59690 1.78981 1.90974 2.07481 2.22532 2.46684 2.57043 2.61868 2.99103 3.11523 3.20795 3.50364 3.73178 3.91083 4.12090 4.23681 4.44183 4.48434 4.58928 4.65989 4.73818 4.86339 4.88143 5.03216 5.13307 5.28192 5.33288 5.54037 5.67810 5.99249 6.35907 6.42962 6.49859 6.77313 6.83795 6.84662 7.47279 7.53443 7.73031 8.54561 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.027371 B = 0.002634 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.734262 B =10628.986538 C =10739.846577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.214 3.786 3 N -0.548 5.548 4 C 0.508 3.492 5 O -0.464 6.464 6 N -0.580 5.580 7 C 0.391 3.609 8 O -0.476 6.476 9 C -0.196 4.196 10 C -0.071 4.071 11 C 0.501 3.499 12 O -0.581 6.581 13 N -0.613 5.613 14 C -0.039 4.039 15 C -0.062 4.062 16 N -0.314 5.314 17 N -0.171 5.171 18 C -0.352 4.352 19 H 0.142 0.858 20 C -0.009 4.009 21 N -0.827 5.827 22 Si 1.018 2.982 23 H -0.239 1.239 24 H -0.275 1.275 25 H -0.274 1.274 26 C -0.079 4.079 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.430 0.570 31 H 0.430 0.570 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.424 0.576 35 H 0.161 0.839 36 H 0.274 0.726 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 3.717 -20.218 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 N -0.276 5.276 4 C 0.203 3.797 5 O -0.270 6.270 6 N -0.317 5.317 7 C 0.204 3.796 8 O -0.287 6.287 9 C -0.202 4.202 10 C -0.111 4.111 11 C 0.290 3.710 12 O -0.461 6.461 13 N -0.259 5.259 14 C -0.145 4.145 15 C -0.238 4.238 16 N -0.146 5.146 17 N 0.060 4.940 18 C -0.483 4.483 19 H 0.160 0.840 20 C -0.220 4.220 21 N -0.456 5.456 22 Si 0.837 3.163 23 H -0.161 1.161 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.229 4.229 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.137 0.863 30 H 0.293 0.707 31 H 0.294 0.706 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.262 0.738 35 H 0.178 0.822 36 H 0.084 0.916 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.986 5.135 -18.125 18.865 hybrid contribution 0.069 -0.887 -0.112 0.897 sum 1.055 4.248 -18.237 18.755 Atomic orbital electron populations 1.21044 0.84943 1.06409 1.04370 1.21845 0.98902 0.85705 0.86571 1.67913 1.08844 1.31996 1.18839 1.20001 0.84042 0.84953 0.90681 1.84633 1.75998 1.30139 1.36241 1.67387 1.44629 0.99354 1.20343 1.19136 0.86986 0.84679 0.88814 1.84788 1.73693 1.34012 1.36171 1.21137 0.93529 0.98075 1.07444 1.20480 1.04723 0.93457 0.92462 1.21117 0.77395 0.80292 0.92222 1.90629 1.52205 1.55324 1.47934 1.42403 1.56592 1.22127 1.04742 1.17305 1.13733 0.98251 0.85259 1.24101 1.07164 1.02206 0.90301 1.78153 1.18027 0.96567 1.21872 1.44843 1.32408 1.13090 1.03695 1.20643 1.37842 1.00824 0.89016 0.84033 1.26876 0.96020 1.00085 0.98981 1.70411 1.34879 1.28138 1.12148 0.84547 0.77648 0.76721 0.77351 1.16117 1.20031 1.19904 1.22055 1.13114 1.02134 0.85585 0.90028 0.88379 0.86347 0.70682 0.70581 0.82878 0.83830 0.73834 0.82229 0.91587 0.79194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.83 71.24 0.70 -1.08 16 2 C 0.21 4.95 6.82 42.45 0.29 5.24 16 3 N -0.55 -14.75 10.40 -301.71 -3.14 -17.89 16 4 C 0.51 14.01 8.71 180.58 1.57 15.58 16 5 O -0.46 -10.54 13.64 -87.58 -1.19 -11.74 16 6 N -0.58 -16.71 10.49 -426.36 -4.47 -21.18 16 7 C 0.39 9.92 7.81 84.84 0.66 10.58 16 8 O -0.48 -10.03 12.74 -88.14 -1.12 -11.15 16 9 C -0.20 -4.35 4.42 -19.59 -0.09 -4.44 16 10 C -0.07 -1.12 5.28 29.10 0.15 -0.97 16 11 C 0.50 14.75 7.79 87.66 0.68 15.43 16 12 O -0.58 -24.21 13.19 -3.09 -0.04 -24.25 16 13 N -0.61 -18.04 5.47 -303.92 -1.66 -19.70 16 14 C -0.04 -1.71 6.90 37.73 0.26 -1.45 16 15 C -0.06 -3.38 10.85 85.42 0.93 -2.45 16 16 N -0.31 -18.96 10.40 -56.47 -0.59 -19.55 16 17 N -0.17 -9.36 3.74 -190.01 -0.71 -10.07 16 18 C -0.35 -18.41 10.25 84.01 0.86 -17.55 16 19 H 0.14 6.35 7.83 -2.91 -0.02 6.33 16 20 C -0.01 -0.44 5.50 84.95 0.47 0.03 16 21 N -0.83 -48.12 11.81 21.66 0.26 -47.86 16 22 Si 1.02 38.45 29.55 68.60 2.03 40.48 16 23 H -0.24 -7.95 7.11 99.48 0.71 -7.25 16 24 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 25 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 26 C -0.08 -3.47 11.49 83.38 0.96 -2.51 16 27 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.12 1.04 6.06 -2.39 -0.01 1.03 16 30 H 0.43 5.68 9.06 -74.06 -0.67 5.01 16 31 H 0.43 3.28 9.06 -74.06 -0.67 2.61 16 32 H 0.15 1.09 6.07 -2.39 -0.01 1.07 16 33 H 0.14 1.26 7.63 -2.39 -0.02 1.24 16 34 H 0.42 7.82 8.83 -92.70 -0.82 7.00 16 35 H 0.16 8.93 5.92 -2.91 -0.02 8.91 16 36 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.19 6.37 8.06 -2.91 -0.02 6.34 16 Total: -1.00 -92.30 331.49 -4.15 -96.46 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.96 Total: 30.04 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 7.45 Total: 16.42 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -10.31 Total: -136.25 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -2.36 Total: -47.14 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -92.30 -4.15 -96.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417620800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.762 kcal (2) G-P(sol) polarization free energy of solvation -92.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds