Wall clock time and date at job start Tue Mar 31 2020 12:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33225 * 126.01661 * 2 1 4 4 C 1.31536 * 109.75949 * 180.15060 * 3 2 1 5 5 O 1.35213 * 125.49243 * 179.82357 * 4 3 2 6 6 N 1.34961 * 109.01898 * 359.56657 * 4 3 2 7 7 H 0.96997 * 126.54867 * 180.23112 * 6 4 3 8 8 C 1.36734 * 126.01736 * 179.66910 * 2 1 3 9 9 C 1.46348 * 126.82833 * 0.02562 * 8 2 1 10 10 O 1.21744 * 120.00270 * 352.35828 * 9 8 2 11 11 N 1.34784 * 119.99810 * 172.36807 * 9 8 2 12 12 C 1.46493 * 120.00006 * 359.87290 * 11 9 8 13 13 C 1.50705 * 109.46950 * 82.69499 * 12 11 9 14 14 H 1.07995 * 119.99756 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99834 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99904 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00065 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46782 * 90.00373 * 17 15 13 19 19 H 1.48499 * 109.46836 * 210.00173 * 17 15 13 20 20 H 1.48500 * 109.46877 * 330.00370 * 17 15 13 21 21 C 1.39956 * 119.99609 * 179.87785 * 11 9 8 22 22 C 1.38870 * 120.04281 * 170.39314 * 21 11 9 23 23 C 1.38110 * 119.94908 * 179.74253 * 22 21 11 24 24 C 1.38482 * 120.04733 * 0.50711 * 23 22 21 25 25 F 1.35095 * 119.95371 * 179.74002 * 24 23 22 26 26 C 1.38477 * 120.09414 * 359.77327 * 24 23 22 27 27 C 1.38108 * 120.04482 * 359.96894 * 26 24 23 28 28 H 1.09000 * 109.46986 * 270.32924 * 1 2 3 29 29 H 1.08999 * 109.46578 * 30.32861 * 1 2 3 30 30 H 1.08995 * 109.47112 * 150.32611 * 1 2 3 31 31 H 0.96696 * 114.00145 * 269.69667 * 5 4 3 32 32 H 1.09003 * 109.46733 * 202.68800 * 12 11 9 33 33 H 1.08997 * 109.47792 * 322.69277 * 12 11 9 34 34 H 0.96996 * 120.00023 * 179.97438 * 16 15 13 35 35 H 1.07994 * 120.02248 * 359.97438 * 22 21 11 36 36 H 1.07997 * 119.98052 * 180.25221 * 23 22 21 37 37 H 1.07994 * 119.97721 * 179.97438 * 26 24 23 38 38 H 1.08002 * 120.02213 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0033 5 8 4.6150 1.5465 -0.0076 6 7 3.6183 -0.6387 0.0042 7 1 4.4244 -1.1781 0.0070 8 6 2.3111 -1.1059 0.0064 9 6 1.8794 -2.5043 0.0139 10 8 0.7014 -2.7770 0.1552 11 7 2.7862 -3.4903 -0.1353 12 6 4.2034 -3.1621 -0.3079 13 6 4.8306 -2.9189 1.0407 14 1 4.2331 -3.0003 1.9366 15 6 6.1672 -2.5926 1.1307 16 7 6.7143 -2.3799 2.3075 17 14 7.2008 -2.4525 -0.4190 18 1 7.1494 -1.0569 -0.9237 19 1 8.6072 -2.8158 -0.1103 20 1 6.6674 -3.3735 -1.4546 21 6 2.3737 -4.8276 -0.1255 22 6 3.2655 -5.8328 -0.4759 23 6 2.8579 -7.1523 -0.4604 24 6 1.5580 -7.4724 -0.1060 25 9 1.1598 -8.7633 -0.0966 26 6 0.6655 -6.4711 0.2380 27 6 1.0705 -5.1508 0.2290 28 1 -0.3633 0.0059 1.0276 29 1 -0.3632 0.8870 -0.5189 30 1 -0.3633 -0.8928 -0.5087 31 1 4.9242 1.7850 -0.8922 32 1 4.7111 -3.9915 -0.8004 33 1 4.2968 -2.2644 -0.9191 34 1 7.6547 -2.1507 2.3709 35 1 4.2780 -5.5832 -0.7566 36 1 3.5522 -7.9348 -0.7288 37 1 -0.3478 -6.7228 0.5137 38 1 0.3740 -4.3701 0.4970 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433666102.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:24 Heat of formation + Delta-G solvation = 5.884495 kcal Electronic energy + Delta-G solvation = -27088.878654 eV Core-core repulsion = 23042.068883 eV Total energy + Delta-G solvation = -4046.809771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.58623 -42.04091 -40.22283 -37.90627 -37.05778 -35.97662 -33.22209 -32.65220 -30.99775 -30.62514 -29.34406 -28.48958 -26.41672 -23.82070 -23.12629 -22.54752 -21.52199 -20.68846 -19.49768 -18.39224 -17.69289 -17.49496 -17.25166 -16.67702 -16.36643 -15.53670 -15.30877 -15.14744 -15.00364 -14.59794 -14.20895 -14.08185 -13.60877 -13.31642 -13.12343 -13.02818 -12.81089 -12.46268 -12.35408 -12.28142 -12.09946 -12.00568 -11.61577 -11.57306 -11.18370 -10.92779 -10.75173 -10.17828 -9.85715 -9.69856 -9.53272 -9.22380 -9.13195 -8.82563 -8.12045 -7.40993 -6.69614 -4.79562 1.20524 1.53734 1.76155 2.74717 2.81717 2.85850 2.89902 2.99508 3.24456 3.52600 3.77234 4.03312 4.21444 4.53810 4.59701 4.79513 5.08655 5.13485 5.23089 5.35360 5.49551 5.61899 5.64563 5.87170 5.96419 5.99756 6.04892 6.17050 6.22689 6.30276 6.44188 6.52309 6.59360 6.75543 6.77920 6.82020 7.11205 7.36006 7.51866 7.84821 7.97271 8.12570 8.33928 8.42079 8.79074 10.40950 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.005774 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.359230 B = 4847.805326 C = 6855.017437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.100 3.900 3 N -0.499 5.499 4 C 0.394 3.606 5 O -0.440 6.440 6 N -0.528 5.528 7 H 0.443 0.557 8 C -0.073 4.073 9 C 0.605 3.395 10 O -0.521 6.521 11 N -0.529 5.529 12 C 0.184 3.816 13 C -0.570 4.570 14 H 0.090 0.910 15 C 0.083 3.917 16 N -0.856 5.856 17 Si 0.849 3.151 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.257 1.257 21 C 0.166 3.834 22 C -0.126 4.126 23 C -0.130 4.130 24 C 0.056 3.944 25 F -0.150 7.150 26 C -0.132 4.132 27 C -0.141 4.141 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.399 0.601 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.276 0.724 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 -1.009 -8.342 9.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.037 4.037 3 N -0.231 5.231 4 C 0.093 3.907 5 O -0.240 6.240 6 N -0.156 5.156 7 H 0.301 0.699 8 C -0.190 4.190 9 C 0.397 3.603 10 O -0.401 6.401 11 N -0.247 5.247 12 C 0.063 3.937 13 C -0.608 4.608 14 H 0.108 0.892 15 C -0.126 4.126 16 N -0.490 5.490 17 Si 0.673 3.327 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.181 1.181 21 C 0.070 3.930 22 C -0.146 4.146 23 C -0.150 4.150 24 C 0.036 3.964 25 F -0.129 7.129 26 C -0.151 4.151 27 C -0.161 4.161 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.256 0.744 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.824 -0.244 -7.541 9.531 hybrid contribution 2.085 -1.133 -0.971 2.564 sum -3.739 -1.376 -8.513 9.399 Atomic orbital electron populations 1.20225 0.86359 1.03155 1.03038 1.20822 0.96523 0.86031 1.00298 1.70129 0.98789 1.30516 1.23630 1.20228 0.87159 0.79762 1.03591 1.84857 1.43608 1.61905 1.33656 1.45552 1.10488 1.07755 1.51833 0.69865 1.20376 0.83855 0.94225 1.20537 1.16790 0.84651 0.82965 0.75890 1.90436 1.16950 1.81707 1.50995 1.45429 1.09567 1.03508 1.66221 1.20416 0.76935 0.97424 0.98951 1.21361 0.95962 1.51328 0.92178 0.89166 1.24950 0.97127 0.94166 0.96347 1.69830 1.13604 1.42401 1.23129 0.87252 0.82042 0.79796 0.83593 1.19114 1.19183 1.18082 1.17966 0.93862 0.83368 0.97786 1.20825 1.00277 0.91044 1.02475 1.20816 0.94581 0.96845 1.02713 1.17708 0.94153 0.78234 1.06320 1.91438 1.91311 1.35372 1.94747 1.21087 0.99713 0.92100 1.02217 1.22483 0.96459 0.97446 0.99681 0.90697 0.91293 0.89528 0.74436 0.92350 0.95366 0.91301 0.84291 0.84914 0.84952 0.79631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 9.80 36.01 0.35 -0.66 16 2 C 0.10 1.82 7.14 -82.53 -0.59 1.23 16 3 N -0.50 -9.38 11.22 -10.82 -0.12 -9.50 16 4 C 0.39 7.35 9.43 -89.58 -0.84 6.50 16 5 O -0.44 -6.98 13.62 -17.33 -0.24 -7.22 16 6 N -0.53 -10.40 4.86 -10.90 -0.05 -10.46 16 7 H 0.44 9.06 2.99 -40.82 -0.12 8.94 16 8 C -0.07 -1.42 6.62 -81.98 -0.54 -1.96 16 9 C 0.60 11.87 7.50 -13.00 -0.10 11.77 16 10 O -0.52 -9.96 11.36 5.15 0.06 -9.90 16 11 N -0.53 -10.34 2.71 -116.28 -0.31 -10.66 16 12 C 0.18 3.69 3.58 -5.19 -0.02 3.67 16 13 C -0.57 -13.56 7.87 -34.44 -0.27 -13.83 16 14 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 15 C 0.08 2.00 5.17 -17.82 -0.09 1.90 16 16 N -0.86 -22.61 13.96 55.43 0.77 -21.84 16 17 Si 0.85 16.86 26.96 -169.99 -4.58 12.27 16 18 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -4.72 6.54 56.52 0.37 -4.35 16 21 C 0.17 3.04 6.48 -83.68 -0.54 2.50 16 22 C -0.13 -2.10 9.30 -39.39 -0.37 -2.46 16 23 C -0.13 -1.95 10.02 -39.54 -0.40 -2.35 16 24 C 0.06 0.86 7.30 -39.40 -0.29 0.57 16 25 F -0.15 -2.26 17.26 2.25 0.04 -2.22 16 26 C -0.13 -2.00 10.02 -39.54 -0.40 -2.40 16 27 C -0.14 -2.42 8.99 -39.40 -0.35 -2.78 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.24 6.65 -51.93 -0.35 0.89 16 31 H 0.40 3.86 9.06 45.56 0.41 4.27 16 32 H 0.06 1.11 4.67 -51.93 -0.24 0.87 16 33 H 0.03 0.55 4.63 -51.93 -0.24 0.31 16 34 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.14 2.23 5.87 -52.49 -0.31 1.92 16 36 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.19 3.29 4.65 -55.61 -0.26 3.03 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -28.15 319.22 -6.46 -34.61 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -2.39 Total: 18.40 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -4.45 Total: 1.70 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.28 Total: -52.46 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.18 Total: -17.11 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -4.58 Total: 12.27 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.15 -6.46 -34.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433666102.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.492 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds