Wall clock time and date at job start Tue Mar 31 2020 12:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47386 * 2 1 4 4 C 1.50696 * 109.46902 * 120.00094 * 2 1 3 5 5 O 1.21305 * 120.00063 * 95.31898 * 4 2 1 6 6 N 1.34775 * 120.00031 * 275.30953 * 4 2 1 7 7 C 1.40598 * 120.00153 * 180.02562 * 6 4 2 8 8 C 1.40652 * 126.08082 * 359.95839 * 7 6 4 9 9 N 1.30908 * 108.38608 * 180.02562 * 8 7 6 10 10 N 1.40066 * 108.40598 * 0.02562 * 9 8 7 11 11 C 1.37329 * 126.06632 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99841 * 180.02562 * 11 10 9 13 13 C 1.38982 * 120.00295 * 0.02562 * 11 10 9 14 14 N 1.31295 * 119.99967 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00197 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47217 * 90.00400 * 15 13 11 17 17 H 1.48506 * 109.47160 * 210.00248 * 15 13 11 18 18 H 1.48500 * 109.47263 * 330.00018 * 15 13 11 19 19 C 1.35682 * 126.08399 * 180.02562 * 7 6 4 20 20 C 1.50697 * 109.46809 * 239.99963 * 2 1 3 21 21 C 1.38247 * 119.97542 * 307.39368 * 20 2 1 22 22 C 1.38198 * 120.02169 * 179.72682 * 21 20 2 23 23 C 1.38458 * 119.97702 * 0.57125 * 22 21 20 24 24 F 1.35107 * 120.02809 * 179.67965 * 23 22 21 25 25 C 1.38458 * 119.94861 * 359.70737 * 23 22 21 26 26 C 1.38195 * 119.97447 * 359.97438 * 25 23 22 27 27 H 1.09000 * 109.47119 * 300.00129 * 1 2 3 28 28 H 1.08997 * 109.47237 * 59.99926 * 1 2 3 29 29 H 1.08993 * 109.47218 * 180.02562 * 1 2 3 30 30 H 0.96694 * 114.00225 * 179.97438 * 3 2 1 31 31 H 0.96997 * 120.00128 * 0.02562 * 6 4 2 32 32 H 1.07993 * 125.80809 * 0.07401 * 8 7 6 33 33 H 0.96995 * 120.00740 * 179.97438 * 14 13 11 34 34 H 1.08002 * 126.24642 * 0.23025 * 19 7 6 35 35 H 1.07998 * 119.98571 * 359.97438 * 21 20 2 36 36 H 1.08003 * 120.01233 * 180.25744 * 22 21 20 37 37 H 1.07994 * 120.01560 * 180.02562 * 25 23 22 38 38 H 1.07997 * 119.98953 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3263 -1.8860 1.1745 6 7 2.1551 -0.0396 2.3929 7 6 2.6242 -0.7023 3.5408 8 6 2.9992 -2.0555 3.6209 9 7 3.3803 -2.3064 4.8479 10 7 3.2636 -1.1286 5.5969 11 6 3.5672 -0.9837 6.9283 12 1 3.4392 -0.0256 7.4102 13 6 4.0390 -2.0699 7.6557 14 7 4.1951 -3.2345 7.0698 15 14 4.4512 -1.8730 9.4670 16 1 3.2462 -2.1664 10.2836 17 1 5.5385 -2.8161 9.8326 18 1 4.8967 -0.4800 9.7247 19 6 2.7944 -0.1505 4.7686 20 6 2.0323 -0.7104 -1.2305 21 6 1.5768 -1.9812 -1.5286 22 6 2.0325 -2.6313 -2.6598 23 6 2.9544 -2.0143 -3.4882 24 9 3.4055 -2.6515 -4.5909 25 6 3.4142 -0.7438 -3.1855 26 6 2.9522 -0.0930 -2.0574 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 2.9703 1.4236 0.0004 31 1 1.9198 0.9003 2.4377 32 1 2.9773 -2.7664 2.8083 33 1 4.5247 -3.9925 7.5773 34 1 2.5913 0.8745 5.0418 35 1 0.8616 -2.4644 -0.8795 36 1 1.6734 -3.6224 -2.8948 37 1 4.1330 -0.2614 -3.8311 38 1 3.3104 0.8981 -1.8212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464513540.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:28 Heat of formation + Delta-G solvation = -37.693783 kcal Electronic energy + Delta-G solvation = -25907.776366 eV Core-core repulsion = 21859.076899 eV Total energy + Delta-G solvation = -4048.699467 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.92827 -41.98913 -41.15558 -39.50420 -37.72355 -35.94156 -34.89893 -33.28196 -32.22564 -31.98681 -30.27519 -29.46609 -26.97339 -25.43523 -23.97083 -23.43136 -22.76247 -21.41329 -21.07881 -19.69606 -19.00163 -18.62185 -17.87969 -17.40636 -17.31737 -16.68381 -16.60608 -16.24070 -16.12735 -15.60728 -15.28249 -15.25794 -14.81625 -14.66546 -14.55958 -14.11812 -13.90042 -13.50677 -13.42277 -13.33251 -13.25242 -13.09568 -12.91178 -12.86880 -12.69766 -12.08820 -11.99218 -11.88746 -11.75128 -11.00888 -10.81759 -10.46444 -10.10111 -10.05050 -9.62385 -8.53034 -8.46778 -6.24044 0.04398 0.27642 1.17700 1.40273 1.46959 1.57970 1.85354 1.99812 2.21592 2.50181 2.62473 2.91410 3.03489 3.09470 3.24612 3.45060 3.72074 3.80954 3.93765 4.06813 4.31397 4.44054 4.45848 4.59970 4.70499 4.78816 4.92233 4.95062 5.00591 5.08430 5.11532 5.13980 5.24078 5.29908 5.45154 5.46673 5.87098 5.96096 6.29433 6.43199 6.74146 6.76652 7.34420 7.46736 7.68671 8.52527 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.002758 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.766769 B =10148.414416 C =10754.185252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.188 3.812 3 O -0.537 6.537 4 C 0.474 3.526 5 O -0.560 6.560 6 N -0.604 5.604 7 C -0.045 4.045 8 C -0.058 4.058 9 N -0.311 5.311 10 N -0.168 5.168 11 C -0.354 4.354 12 H 0.141 0.859 13 C -0.007 4.007 14 N -0.825 5.825 15 Si 1.018 2.982 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.244 1.244 19 C -0.080 4.080 20 C -0.125 4.125 21 C -0.061 4.061 22 C -0.164 4.164 23 C 0.083 3.917 24 F -0.147 7.147 25 C -0.156 4.156 26 C -0.077 4.077 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.395 0.605 31 H 0.421 0.579 32 H 0.167 0.833 33 H 0.276 0.724 34 H 0.187 0.813 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 10.685 -15.606 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.143 3.857 3 O -0.345 6.345 4 C 0.260 3.740 5 O -0.438 6.438 6 N -0.250 5.250 7 C -0.151 4.151 8 C -0.233 4.233 9 N -0.143 5.143 10 N 0.063 4.937 11 C -0.485 4.485 12 H 0.158 0.842 13 C -0.218 4.218 14 N -0.453 5.453 15 Si 0.837 3.163 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.167 1.167 19 C -0.230 4.230 20 C -0.126 4.126 21 C -0.079 4.079 22 C -0.183 4.183 23 C 0.064 3.936 24 F -0.126 7.126 25 C -0.174 4.174 26 C -0.095 4.095 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.246 0.754 31 H 0.259 0.741 32 H 0.184 0.816 33 H 0.085 0.915 34 H 0.204 0.796 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.176 0.824 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.098 8.879 -14.863 18.048 hybrid contribution 0.549 0.110 -0.051 0.562 sum -4.549 8.990 -14.914 17.998 Atomic orbital electron populations 1.21848 0.88376 1.03932 1.05200 1.19870 0.97255 0.81606 0.86974 1.86572 1.28856 1.22674 1.96427 1.21798 0.79043 0.87713 0.85481 1.90622 1.50377 1.17794 1.85053 1.42430 1.62473 1.13797 1.06257 1.17337 1.16925 0.92751 0.88061 1.24157 1.06970 0.96205 0.96006 1.78156 1.26771 1.06486 1.02902 1.44837 1.36099 1.05046 1.07728 1.20612 1.46102 1.00343 0.81416 0.84168 1.26866 0.94848 0.93827 1.06265 1.70394 1.34856 1.01370 1.38676 0.84601 0.78310 0.79791 0.73565 1.18924 1.20305 1.16686 1.22013 1.13992 0.96790 0.90208 1.20183 0.99655 0.95825 0.96942 1.20914 0.98665 0.93557 0.94767 1.21293 0.99225 1.02016 0.95752 1.18006 0.97598 0.92800 0.85172 1.91478 1.87966 1.81967 1.51206 1.21341 1.02721 0.93580 0.99803 1.21084 0.94544 1.01006 0.92878 0.90281 0.88591 0.90418 0.75379 0.74144 0.81575 0.91452 0.79589 0.84996 0.83646 0.82371 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.55 71.98 0.62 -1.87 16 2 C 0.19 4.03 1.15 -12.29 -0.01 4.02 16 3 O -0.54 -8.78 11.52 -148.98 -1.72 -10.50 16 4 C 0.47 14.90 6.65 87.66 0.58 15.49 16 5 O -0.56 -22.55 12.34 -3.11 -0.04 -22.59 16 6 N -0.60 -19.55 5.38 -303.92 -1.63 -21.19 16 7 C -0.04 -1.98 6.90 37.73 0.26 -1.72 16 8 C -0.06 -3.11 10.85 85.42 0.93 -2.18 16 9 N -0.31 -18.61 10.40 -56.47 -0.59 -19.20 16 10 N -0.17 -9.23 3.74 -190.01 -0.71 -9.94 16 11 C -0.35 -18.55 10.25 84.01 0.86 -17.69 16 12 H 0.14 6.35 7.83 -2.91 -0.02 6.32 16 13 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 14 N -0.82 -47.51 11.81 21.66 0.26 -47.26 16 15 Si 1.02 38.30 29.55 68.60 2.03 40.33 16 16 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 17 H -0.28 -10.40 7.11 99.48 0.71 -9.70 16 18 H -0.24 -8.28 7.11 99.48 0.71 -7.57 16 19 C -0.08 -3.60 11.49 83.38 0.96 -2.64 16 20 C -0.12 -2.76 4.56 -19.86 -0.09 -2.85 16 21 C -0.06 -1.46 8.00 22.26 0.18 -1.28 16 22 C -0.16 -3.74 10.03 22.31 0.22 -3.52 16 23 C 0.08 1.87 7.30 22.37 0.16 2.04 16 24 F -0.15 -3.47 17.27 44.97 0.78 -2.69 16 25 C -0.16 -2.92 10.03 22.31 0.22 -2.70 16 26 C -0.08 -1.40 9.24 22.26 0.21 -1.19 16 27 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.46 7.01 -2.39 -0.02 1.44 16 30 H 0.40 4.52 7.74 -74.06 -0.57 3.95 16 31 H 0.42 10.34 8.27 -92.71 -0.77 9.57 16 32 H 0.17 8.98 5.92 -2.91 -0.02 8.96 16 33 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.19 6.60 8.06 -2.91 -0.02 6.58 16 35 H 0.13 3.19 6.97 -2.91 -0.02 3.17 16 36 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.16 1.90 6.43 -2.91 -0.02 1.89 16 Total: -1.00 -75.45 332.76 3.74 -71.71 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.19 Total: 37.29 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 5.56 Total: -15.97 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -2.68 Total: -97.58 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.75 Total: -33.08 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -75.45 3.74 -71.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464513540.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.018 kcal (2) G-P(sol) polarization free energy of solvation -75.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds