Wall clock time and date at job start Tue Mar 31 2020 12:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46979 * 2 1 4 4 C 1.50694 * 109.46798 * 240.00023 * 2 1 3 5 5 O 1.21311 * 120.00299 * 265.10755 * 4 2 1 6 6 N 1.34774 * 120.00268 * 85.11570 * 4 2 1 7 7 C 1.40596 * 120.00345 * 179.97438 * 6 4 2 8 8 C 1.40647 * 126.08176 * 359.97290 * 7 6 4 9 9 N 1.30913 * 108.38664 * 179.77657 * 8 7 6 10 10 N 1.40068 * 108.40568 * 0.37962 * 9 8 7 11 11 C 1.37318 * 126.06715 * 179.87410 * 10 9 8 12 12 H 1.08001 * 120.00320 * 179.68601 * 11 10 9 13 13 C 1.38989 * 120.00351 * 359.42026 * 11 10 9 14 14 N 1.31301 * 119.99752 * 0.27241 * 13 11 10 15 15 Si 1.86795 * 120.00422 * 180.27105 * 13 11 10 16 16 H 1.48503 * 109.47027 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46919 * 119.99941 * 15 13 11 18 18 H 1.48493 * 109.47348 * 240.00119 * 15 13 11 19 19 C 1.35682 * 126.07994 * 179.97438 * 7 6 4 20 20 C 1.50698 * 109.47169 * 120.00109 * 2 1 3 21 21 C 1.38247 * 119.97475 * 52.09283 * 20 2 1 22 22 C 1.38196 * 120.02334 * 179.73191 * 21 20 2 23 23 C 1.38457 * 119.97436 * 0.51348 * 22 21 20 24 24 F 1.35103 * 120.02191 * 179.73132 * 23 22 21 25 25 C 1.38454 * 119.95108 * 359.75758 * 23 22 21 26 26 C 1.38197 * 119.97190 * 359.97438 * 25 23 22 27 27 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47119 * 299.99925 * 1 2 3 29 29 H 1.09000 * 109.47194 * 59.99947 * 1 2 3 30 30 H 0.96704 * 114.00062 * 180.02562 * 3 2 1 31 31 H 0.97006 * 120.00167 * 359.97438 * 6 4 2 32 32 H 1.07994 * 125.80594 * 0.02562 * 8 7 6 33 33 H 0.96994 * 119.99817 * 180.02562 * 14 13 11 34 34 H 1.07996 * 126.24946 * 0.02562 * 19 7 6 35 35 H 1.08001 * 119.98742 * 359.97438 * 21 20 2 36 36 H 1.08001 * 120.01397 * 180.29803 * 22 21 20 37 37 H 1.07997 * 120.01707 * 179.97438 * 25 23 22 38 38 H 1.08000 * 119.98602 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0322 -0.7104 -1.2304 5 8 2.3189 -1.8879 -1.1765 6 7 2.1632 -0.0375 -2.3908 7 6 2.6322 -0.7002 -3.5387 8 6 3.0006 -2.0551 -3.6206 9 7 3.3800 -2.3064 -4.8481 10 7 3.2776 -1.1249 -5.5933 11 6 3.5868 -0.9785 -6.9232 12 1 3.4657 -0.0187 -7.4034 13 6 4.0610 -2.0641 -7.6501 14 7 4.2082 -3.2310 -7.0665 15 14 4.4887 -1.8632 -9.4573 16 1 4.2351 -0.4602 -9.8729 17 1 5.9221 -2.1904 -9.6659 18 1 3.6485 -2.7791 -10.2697 19 6 2.8101 -0.1463 -4.7645 20 6 2.0323 -0.7104 1.2304 21 6 1.5689 -1.9769 1.5343 22 6 2.0331 -2.6316 2.6594 23 6 2.9545 -2.0143 3.4881 24 9 3.4049 -2.6512 4.5912 25 6 3.4138 -0.7436 3.1858 26 6 2.9524 -0.0931 2.0572 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9703 1.4237 -0.0004 31 1 1.9337 0.9040 -2.4341 32 1 2.9713 -2.7679 -2.8098 33 1 4.5394 -3.9886 -7.5736 34 1 2.6178 0.8815 -5.0348 35 1 0.8468 -2.4565 0.8901 36 1 1.6745 -3.6230 2.8941 37 1 4.1322 -0.2609 3.8317 38 1 3.3107 0.8980 1.8210 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464513547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:30 Heat of formation + Delta-G solvation = -14.242769 kcal Electronic energy + Delta-G solvation = -25906.296336 eV Core-core repulsion = 21858.613781 eV Total energy + Delta-G solvation = -4047.682554 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.01143 -40.69776 -39.54654 -38.28852 -36.72836 -34.29080 -33.13738 -32.38016 -31.13698 -30.27617 -29.27594 -27.78693 -25.23450 -24.26270 -23.10467 -22.25736 -20.95233 -20.09183 -19.46446 -18.50188 -17.77684 -17.21208 -16.82589 -16.39176 -15.69789 -15.49966 -15.19187 -14.95240 -14.87283 -14.49025 -13.84493 -13.76992 -13.73370 -13.26897 -13.23915 -12.96256 -12.86421 -12.50986 -12.45989 -12.23380 -11.85515 -11.69519 -11.43247 -11.30094 -11.14858 -10.99754 -10.84059 -10.52888 -10.20518 -9.27308 -9.20462 -9.08577 -8.84883 -8.67905 -8.09629 -6.74366 -6.58701 -4.26012 0.94854 1.12511 2.66903 2.97657 3.03197 3.09418 3.25502 3.60466 3.64426 3.84199 3.89152 4.12013 4.33033 4.41313 4.56290 4.65945 4.74189 4.93824 4.99657 5.08906 5.14970 5.28922 5.50374 5.58127 5.73790 5.81117 5.90970 5.97714 6.11226 6.21336 6.31670 6.41172 6.72525 6.84498 6.91702 7.03436 7.19524 7.23325 7.82893 8.12294 8.24228 8.57451 8.77755 9.34425 9.63458 10.37285 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024725 B = 0.002759 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.199908 B =10146.298996 C =10749.951613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.168 3.832 3 O -0.546 6.546 4 C 0.473 3.527 5 O -0.524 6.524 6 N -0.611 5.611 7 C -0.063 4.063 8 C -0.032 4.032 9 N -0.261 5.261 10 N -0.142 5.142 11 C -0.323 4.323 12 H 0.117 0.883 13 C 0.046 3.954 14 N -0.769 5.769 15 Si 0.935 3.065 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.082 4.082 20 C -0.111 4.111 21 C -0.047 4.047 22 C -0.155 4.155 23 C 0.098 3.902 24 F -0.142 7.142 25 C -0.157 4.157 26 C -0.080 4.080 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.383 0.617 31 H 0.402 0.598 32 H 0.175 0.825 33 H 0.274 0.726 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 7.744 15.381 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.123 3.877 3 O -0.353 6.353 4 C 0.257 3.743 5 O -0.401 6.401 6 N -0.254 5.254 7 C -0.169 4.169 8 C -0.208 4.208 9 N -0.092 5.092 10 N 0.091 4.909 11 C -0.455 4.455 12 H 0.135 0.865 13 C -0.171 4.171 14 N -0.396 5.396 15 Si 0.759 3.241 16 H -0.187 1.187 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.233 4.233 20 C -0.112 4.112 21 C -0.065 4.065 22 C -0.174 4.174 23 C 0.079 3.921 24 F -0.121 7.121 25 C -0.176 4.176 26 C -0.098 4.098 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.232 0.768 31 H 0.236 0.764 32 H 0.192 0.808 33 H 0.085 0.915 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.841 5.879 14.593 16.461 hybrid contribution 0.535 0.983 -0.063 1.121 sum -4.306 6.863 14.530 16.636 Atomic orbital electron populations 1.21783 0.89739 1.03628 1.04003 1.20140 0.96470 0.81380 0.89701 1.86561 1.27555 1.24421 1.96731 1.20801 0.80769 0.88034 0.84662 1.90630 1.49503 1.15621 1.84304 1.42467 1.62441 1.12804 1.07639 1.17288 1.19131 0.93949 0.86496 1.24100 1.05707 0.94369 0.96611 1.78265 1.25112 1.04138 1.01648 1.44569 1.34665 1.04616 1.07073 1.19928 1.45316 0.98847 0.81406 0.86542 1.25653 0.95795 0.94634 1.01060 1.70227 1.32941 1.00082 1.36318 0.85757 0.78653 0.79257 0.80446 1.18674 1.19901 1.19899 1.21275 1.15774 0.95592 0.90706 1.20053 0.98793 0.95793 0.96536 1.20843 0.98174 0.93011 0.94518 1.21139 0.98986 1.01362 0.95881 1.17764 0.97209 0.92030 0.85102 1.91491 1.87929 1.81771 1.50916 1.21026 1.02807 0.94170 0.99568 1.20749 0.95644 0.99917 0.93494 0.90134 0.90555 0.90734 0.76807 0.76404 0.80802 0.91492 0.83667 0.84495 0.84587 0.84719 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.54 37.16 0.32 -1.06 16 2 C 0.17 1.99 1.16 -92.93 -0.11 1.88 16 3 O -0.55 -5.47 11.50 -35.23 -0.41 -5.87 16 4 C 0.47 7.73 6.65 -10.99 -0.07 7.66 16 5 O -0.52 -10.45 12.38 5.53 0.07 -10.38 16 6 N -0.61 -10.42 5.38 -10.00 -0.05 -10.47 16 7 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 8 C -0.03 -0.84 10.85 -17.03 -0.18 -1.02 16 9 N -0.26 -7.51 10.40 30.80 0.32 -7.19 16 10 N -0.14 -3.85 3.74 -11.41 -0.04 -3.89 16 11 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 12 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 13 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 14 N -0.77 -21.35 11.81 55.50 0.66 -20.69 16 15 Si 0.93 18.75 29.55 -169.99 -5.02 13.73 16 16 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 20 C -0.11 -1.32 4.56 -104.62 -0.48 -1.80 16 21 C -0.05 -0.58 8.01 -39.59 -0.32 -0.89 16 22 C -0.15 -1.79 10.03 -39.52 -0.40 -2.18 16 23 C 0.10 1.15 7.30 -39.42 -0.29 0.87 16 24 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 25 C -0.16 -1.65 10.03 -39.52 -0.40 -2.05 16 26 C -0.08 -0.83 9.24 -39.59 -0.37 -1.20 16 27 H 0.08 0.80 6.99 -51.93 -0.36 0.44 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.38 2.95 7.74 45.56 0.35 3.30 16 31 H 0.40 5.55 8.26 -40.82 -0.34 5.21 16 32 H 0.18 4.46 5.92 -52.49 -0.31 4.15 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 35 H 0.14 1.62 6.97 -52.49 -0.37 1.25 16 36 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.06 6.43 -52.49 -0.34 0.72 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -33.25 332.75 -5.75 -39.00 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -3.02 Total: 13.86 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -3.30 Total: -11.42 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.88 Total: -42.24 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.34 Total: -16.26 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.25 -5.75 -39.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464513547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.755 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds