Wall clock time and date at job start Tue Mar 31 2020 12:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38050 * 126.29557 * 2 1 4 4 C 1.47416 * 126.41269 * 359.96530 * 3 2 1 5 5 O 1.21623 * 119.99958 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99966 * 180.02562 * 4 3 2 7 7 C 1.40285 * 120.00100 * 179.97438 * 6 4 3 8 8 C 1.35962 * 127.29209 * 359.68179 * 7 6 4 9 9 N 1.35790 * 107.06887 * 179.88246 * 8 7 6 10 10 H 0.97004 * 124.89232 * 180.15330 * 9 8 7 11 11 N 1.28448 * 110.22838 * 0.40013 * 9 8 7 12 12 C 1.31966 * 110.25004 * 359.74834 * 11 9 8 13 13 C 1.47359 * 126.47890 * 179.97438 * 12 11 9 14 14 O 1.21521 * 119.99757 * 180.02562 * 13 12 11 15 15 O 1.34758 * 120.00373 * 0.02562 * 13 12 11 16 16 C 1.41291 * 107.17368 * 180.23027 * 3 2 1 17 17 N 1.30454 * 108.02041 * 359.61720 * 16 3 2 18 18 N 1.34275 * 126.29124 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.75359 * 359.97438 * 18 2 1 20 20 C 1.50707 * 109.46789 * 90.00529 * 19 18 2 21 21 H 1.07991 * 120.00012 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99642 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00527 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99708 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46933 * 60.00520 * 24 22 20 26 26 H 1.48507 * 109.46915 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47305 * 300.00064 * 24 22 20 28 28 H 1.08997 * 109.47354 * 89.97545 * 1 2 3 29 29 H 1.08995 * 109.46803 * 209.97780 * 1 2 3 30 30 H 1.09002 * 109.46380 * 329.97212 * 1 2 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 6 4 3 32 32 H 1.07990 * 126.46468 * 0.02562 * 8 7 6 33 33 H 0.96695 * 116.99834 * 179.97438 * 15 13 12 34 34 H 1.07997 * 125.99036 * 179.76712 * 16 3 2 35 35 H 1.08999 * 109.47059 * 210.00225 * 19 18 2 36 36 H 1.08996 * 109.47675 * 330.00546 * 19 18 2 37 37 H 0.96995 * 120.00180 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8861 2.5202 -0.0007 5 8 0.6996 2.7877 -0.0009 6 7 2.8002 3.5105 -0.0011 7 6 2.3833 4.8500 -0.0024 8 6 1.1057 5.3150 -0.0093 9 7 1.1751 6.6711 -0.0050 10 1 0.4089 7.2660 -0.0061 11 7 2.4015 7.0530 -0.0045 12 6 3.2057 6.0067 -0.0029 13 6 4.6790 6.0342 -0.0023 14 8 5.3061 4.9933 -0.0012 15 8 5.3311 7.2136 -0.0031 16 6 3.6592 0.6498 -0.0054 17 7 3.6341 -0.6545 -0.0002 18 7 2.3018 -1.0823 -0.0005 19 6 1.8502 -2.4759 -0.0006 20 6 1.6950 -2.9535 -1.4215 21 1 1.9107 -2.2856 -2.2422 22 6 1.2775 -4.2431 -1.6735 23 7 1.0143 -5.0564 -0.6740 24 14 1.0844 -4.8349 -3.4348 25 1 2.3899 -4.7370 -4.1358 26 1 0.6279 -6.2481 -3.4349 27 1 0.0826 -3.9905 -4.1337 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3632 0.8898 0.5143 31 1 3.7464 3.2971 -0.0006 32 1 0.2055 4.7185 -0.0145 33 1 6.2974 7.1809 -0.0024 34 1 4.5450 1.2675 -0.0104 35 1 2.5850 -3.0960 0.5129 36 1 0.8917 -2.5474 0.5135 37 1 0.7210 -5.9638 -0.8514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594258982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:41 Heat of formation + Delta-G solvation = 18.388151 kcal Electronic energy + Delta-G solvation = -25690.583563 eV Core-core repulsion = 21664.235953 eV Total energy + Delta-G solvation = -4026.347610 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.95264 -40.86822 -40.07286 -39.03923 -36.37279 -34.85657 -33.91230 -32.18351 -31.84261 -31.34073 -29.96689 -27.36581 -26.68788 -25.36393 -23.77891 -22.95392 -21.65782 -20.94985 -19.63557 -19.31266 -18.61860 -18.19222 -16.98449 -16.87896 -16.67848 -16.41396 -16.03029 -15.31241 -15.14892 -14.86307 -14.51401 -14.13123 -13.98585 -13.78811 -13.39577 -13.21345 -12.64780 -12.47983 -12.14651 -11.85351 -11.84290 -11.53066 -11.35819 -11.23049 -11.14390 -11.12365 -10.88916 -10.39451 -10.25409 -9.98338 -9.76414 -9.58513 -8.72539 -8.64502 -8.35386 -7.90556 -6.35515 -4.43681 0.98881 1.68982 2.20215 2.34393 2.69447 2.71740 2.92055 3.17982 3.18984 3.23172 3.28199 3.49245 3.82649 4.22448 4.22813 4.72581 4.96411 5.02808 5.13130 5.18841 5.42843 5.44606 5.63779 5.70183 5.88072 6.06396 6.13674 6.36139 6.47371 6.52702 6.72464 6.75229 6.87668 7.10490 7.35106 7.52481 7.56744 7.69587 7.73288 7.75034 8.28663 8.36875 8.61451 9.23420 10.72682 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023151 B = 0.002771 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.166974 B =10100.789767 C =10619.492403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.171 3.829 3 C -0.334 4.334 4 C 0.608 3.392 5 O -0.543 6.543 6 N -0.639 5.639 7 C 0.107 3.893 8 C -0.034 4.034 9 N -0.367 5.367 10 H 0.454 0.546 11 N -0.218 5.218 12 C -0.036 4.036 13 C 0.578 3.422 14 O -0.511 6.511 15 O -0.501 6.501 16 C 0.062 3.938 17 N -0.292 5.292 18 N -0.312 5.312 19 C 0.251 3.749 20 C -0.542 4.542 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.890 5.890 24 Si 0.908 3.092 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.422 0.578 32 H 0.214 0.786 33 H 0.416 0.584 34 H 0.179 0.821 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 22.223 2.657 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.033 3.967 3 C -0.350 4.350 4 C 0.400 3.600 5 O -0.422 6.422 6 N -0.284 5.284 7 C 0.002 3.998 8 C -0.180 4.180 9 N -0.086 5.086 10 H 0.299 0.701 11 N -0.059 5.059 12 C -0.194 4.194 13 C 0.421 3.579 14 O -0.397 6.397 15 O -0.311 6.311 16 C -0.125 4.125 17 N -0.111 5.111 18 N -0.089 5.089 19 C 0.134 3.866 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.735 3.265 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.261 0.739 32 H 0.231 0.769 33 H 0.274 0.726 34 H 0.196 0.804 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.598 21.663 2.721 21.842 hybrid contribution 0.306 -0.405 -0.968 1.093 sum 0.905 21.258 1.753 21.350 Atomic orbital electron populations 1.20592 0.86635 1.03897 1.04038 1.21465 0.94977 0.86422 0.93791 1.19406 0.93413 0.91539 1.30609 1.17396 0.84569 0.83895 0.74098 1.90553 1.16681 1.83730 1.51258 1.42898 1.11659 1.01250 1.72585 1.17533 0.91640 0.84660 1.06011 1.23426 1.00074 0.83499 1.10972 1.43337 1.06169 1.06957 1.52179 0.70077 1.73629 0.90288 1.25466 1.16470 1.20246 0.91105 0.89591 1.18486 1.19103 0.85909 0.81153 0.71774 1.90899 1.67731 1.34025 1.47079 1.84629 1.27219 1.33818 1.85445 1.23831 0.96399 0.92672 0.99635 1.77190 0.98466 1.12168 1.23308 1.49425 1.02531 1.08360 1.48536 1.19879 0.96469 0.70773 0.99496 1.21207 1.47657 0.98190 0.90953 0.91659 1.24917 0.94391 0.95957 0.98322 1.69900 1.44367 1.07213 1.31212 0.86375 0.78913 0.77753 0.83454 1.19871 1.20862 1.19834 0.89670 0.90718 0.88780 0.73914 0.76945 0.72576 0.80402 0.92410 0.92472 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.58 9.57 36.01 0.34 -1.24 16 2 C 0.17 3.36 7.01 -81.59 -0.57 2.79 16 3 C -0.33 -5.98 6.13 -105.07 -0.64 -6.62 16 4 C 0.61 9.73 7.78 -12.52 -0.10 9.63 16 5 O -0.54 -8.95 12.12 5.26 0.06 -8.88 16 6 N -0.64 -8.86 5.43 -10.65 -0.06 -8.92 16 7 C 0.11 1.38 7.00 -83.39 -0.58 0.80 16 8 C -0.03 -0.37 10.91 -16.62 -0.18 -0.55 16 9 N -0.37 -3.00 6.86 30.72 0.21 -2.79 16 10 H 0.45 1.73 8.96 -190.45 -1.71 0.02 16 11 N -0.22 -2.34 12.23 33.45 0.41 -1.93 16 12 C -0.04 -0.43 7.17 -82.68 -0.59 -1.02 16 13 C 0.58 6.55 8.33 34.44 0.29 6.84 16 14 O -0.51 -6.59 16.14 -19.28 -0.31 -6.90 16 15 O -0.50 -4.17 13.44 -40.65 -0.55 -4.72 16 16 C 0.06 1.10 11.50 -16.98 -0.20 0.90 16 17 N -0.29 -6.26 12.50 30.86 0.39 -5.88 16 18 N -0.31 -6.93 3.56 -57.77 -0.21 -7.13 16 19 C 0.25 6.14 5.97 -5.19 -0.03 6.11 16 20 C -0.54 -14.41 9.39 -34.44 -0.32 -14.73 16 21 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16 24 Si 0.91 20.61 29.54 -169.99 -5.02 15.58 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.07 1.24 7.05 -51.93 -0.37 0.87 16 30 H 0.09 1.46 6.50 -51.93 -0.34 1.12 16 31 H 0.42 5.56 6.10 -40.82 -0.25 5.31 16 32 H 0.21 2.26 6.01 -52.49 -0.32 1.95 16 33 H 0.42 1.35 9.11 45.56 0.42 1.77 16 34 H 0.18 2.43 7.50 -52.49 -0.39 2.03 16 35 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.06 1.38 7.02 -51.93 -0.36 1.01 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -33.04 333.31 -5.71 -38.75 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.71 Total: 6.78 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.69 Total: 4.62 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 1.48 Total: -50.25 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.79 Total: -20.50 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.04 -5.71 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594258982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.139 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds