Wall clock time and date at job start Tue Mar 31 2020 12:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38050 * 126.29557 * 2 1 4 4 C 1.47416 * 126.41269 * 359.96530 * 3 2 1 5 5 O 1.21623 * 119.99958 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99966 * 180.02562 * 4 3 2 7 7 C 1.40285 * 120.00100 * 179.97438 * 6 4 3 8 8 C 1.35962 * 127.29209 * 359.68179 * 7 6 4 9 9 N 1.35790 * 107.06887 * 179.88246 * 8 7 6 10 10 H 0.97004 * 124.89232 * 180.15330 * 9 8 7 11 11 N 1.28448 * 110.22838 * 0.40013 * 9 8 7 12 12 C 1.31966 * 110.25004 * 359.74834 * 11 9 8 13 13 C 1.47359 * 126.47890 * 179.97438 * 12 11 9 14 14 O 1.21521 * 119.99757 * 180.02562 * 13 12 11 15 15 O 1.34758 * 120.00373 * 0.02562 * 13 12 11 16 16 C 1.41291 * 107.17368 * 180.23027 * 3 2 1 17 17 N 1.30454 * 108.02041 * 359.61720 * 16 3 2 18 18 N 1.34275 * 126.29124 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.75359 * 359.97438 * 18 2 1 20 20 C 1.50707 * 109.46789 * 90.00529 * 19 18 2 21 21 H 1.07991 * 120.00012 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99642 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00527 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99708 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46933 * 60.00520 * 24 22 20 26 26 H 1.48507 * 109.46915 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47305 * 300.00064 * 24 22 20 28 28 H 1.08997 * 109.47354 * 89.97545 * 1 2 3 29 29 H 1.08995 * 109.46803 * 209.97780 * 1 2 3 30 30 H 1.09002 * 109.46380 * 329.97212 * 1 2 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 6 4 3 32 32 H 1.07990 * 126.46468 * 0.02562 * 8 7 6 33 33 H 0.96695 * 116.99834 * 179.97438 * 15 13 12 34 34 H 1.07997 * 125.99036 * 179.76712 * 16 3 2 35 35 H 1.08999 * 109.47059 * 210.00225 * 19 18 2 36 36 H 1.08996 * 109.47675 * 330.00546 * 19 18 2 37 37 H 0.96995 * 120.00180 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8861 2.5202 -0.0007 5 8 0.6996 2.7877 -0.0009 6 7 2.8002 3.5105 -0.0011 7 6 2.3833 4.8500 -0.0024 8 6 1.1057 5.3150 -0.0093 9 7 1.1751 6.6711 -0.0050 10 1 0.4089 7.2660 -0.0061 11 7 2.4015 7.0530 -0.0045 12 6 3.2057 6.0067 -0.0029 13 6 4.6790 6.0342 -0.0023 14 8 5.3061 4.9933 -0.0012 15 8 5.3311 7.2136 -0.0031 16 6 3.6592 0.6498 -0.0054 17 7 3.6341 -0.6545 -0.0002 18 7 2.3018 -1.0823 -0.0005 19 6 1.8502 -2.4759 -0.0006 20 6 1.6950 -2.9535 -1.4215 21 1 1.9107 -2.2856 -2.2422 22 6 1.2775 -4.2431 -1.6735 23 7 1.0143 -5.0564 -0.6740 24 14 1.0844 -4.8349 -3.4348 25 1 2.3899 -4.7370 -4.1358 26 1 0.6279 -6.2481 -3.4349 27 1 0.0826 -3.9905 -4.1337 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3632 0.8898 0.5143 31 1 3.7464 3.2971 -0.0006 32 1 0.2055 4.7185 -0.0145 33 1 6.2974 7.1809 -0.0024 34 1 4.5450 1.2675 -0.0104 35 1 2.5850 -3.0960 0.5129 36 1 0.8917 -2.5474 0.5135 37 1 0.7210 -5.9638 -0.8514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594258982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:41 Heat of formation + Delta-G solvation = -6.867544 kcal Electronic energy + Delta-G solvation = -25691.678732 eV Core-core repulsion = 21664.235953 eV Total energy + Delta-G solvation = -4027.442779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.111 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.80096 -42.35299 -40.87313 -40.27876 -37.15155 -35.98956 -35.75563 -33.85601 -32.86121 -32.69106 -31.05250 -29.07118 -28.15881 -26.19095 -25.48407 -24.28814 -22.81164 -21.91652 -20.94652 -20.54955 -19.70054 -19.01994 -18.83943 -18.10129 -17.74738 -17.26626 -17.04594 -16.78502 -16.45764 -16.16653 -15.97386 -15.50595 -15.36133 -14.80418 -14.57255 -14.28038 -14.24829 -13.98936 -13.66392 -13.56751 -13.09087 -12.97860 -12.67977 -12.60764 -12.30047 -12.25603 -12.21955 -12.00546 -11.87472 -11.73746 -10.90352 -10.74921 -10.58153 -10.28602 -9.66842 -9.10238 -8.37077 -6.53435 0.12137 0.53437 1.01484 1.33538 1.39301 1.40426 1.47430 1.53270 1.69386 1.93804 1.97423 2.33402 2.48480 2.53231 2.95400 3.33421 3.70169 3.72951 3.88936 4.05865 4.21371 4.29886 4.48725 4.61765 4.68090 4.73128 4.81950 4.90540 5.10761 5.17689 5.44188 5.49618 5.52782 5.62032 5.75363 6.02920 6.03556 6.36518 6.55223 6.68041 6.80428 6.98955 7.11933 7.17766 8.70661 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023151 B = 0.002771 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.166974 B =10100.789767 C =10619.492403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.157 3.843 3 C -0.331 4.331 4 C 0.611 3.389 5 O -0.550 6.550 6 N -0.629 5.629 7 C 0.075 3.925 8 C -0.021 4.021 9 N -0.342 5.342 10 H 0.473 0.527 11 N -0.218 5.218 12 C -0.049 4.049 13 C 0.580 3.420 14 O -0.533 6.533 15 O -0.495 6.495 16 C 0.078 3.922 17 N -0.334 5.334 18 N -0.336 5.336 19 C 0.267 3.733 20 C -0.557 4.557 21 H 0.053 0.947 22 C 0.025 3.975 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.275 1.275 26 H -0.274 1.274 27 H -0.265 1.265 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.425 0.575 32 H 0.217 0.783 33 H 0.437 0.563 34 H 0.217 0.783 35 H 0.031 0.969 36 H 0.055 0.945 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 24.414 1.946 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.021 3.979 3 C -0.346 4.346 4 C 0.402 3.598 5 O -0.429 6.429 6 N -0.274 5.274 7 C -0.030 4.030 8 C -0.168 4.168 9 N -0.064 5.064 10 H 0.323 0.677 11 N -0.059 5.059 12 C -0.207 4.207 13 C 0.423 3.577 14 O -0.421 6.421 15 O -0.308 6.308 16 C -0.110 4.110 17 N -0.153 5.153 18 N -0.113 5.113 19 C 0.148 3.852 20 C -0.595 4.595 21 H 0.071 0.929 22 C -0.176 4.176 23 N -0.554 5.554 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.198 1.198 27 H -0.190 1.190 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.264 0.736 32 H 0.234 0.766 33 H 0.299 0.701 34 H 0.234 0.766 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.265 23.939 2.019 24.025 hybrid contribution 0.436 -0.855 -0.703 1.190 sum 0.701 23.084 1.316 23.132 Atomic orbital electron populations 1.20625 0.85132 1.04495 1.04286 1.22001 0.96148 0.86272 0.93529 1.19654 0.93230 0.92357 1.29401 1.17071 0.84756 0.83469 0.74497 1.90544 1.16886 1.83764 1.51720 1.42651 1.11353 1.01505 1.71936 1.17775 0.92787 0.84250 1.08152 1.23443 0.99468 0.84387 1.09472 1.43410 1.06270 1.06511 1.50219 0.67675 1.73618 0.90914 1.25058 1.16281 1.20382 0.91776 0.89486 1.19018 1.19059 0.85826 0.81446 0.71342 1.90883 1.68121 1.34863 1.48270 1.84582 1.29200 1.32294 1.84707 1.24453 0.97744 0.91754 0.97006 1.77136 0.98499 1.14134 1.25570 1.49160 1.03309 1.07932 1.50915 1.19403 0.95433 0.72152 0.98182 1.21372 1.48024 0.98527 0.91584 0.92906 1.25707 0.93814 0.95916 1.02197 1.69984 1.44775 1.07596 1.33083 0.85421 0.78800 0.77694 0.78705 1.20017 1.19834 1.18957 0.89479 0.90943 0.87241 0.73606 0.76635 0.70062 0.76639 0.95104 0.92727 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.94 9.57 71.24 0.68 -2.26 16 2 C 0.16 6.18 7.01 42.14 0.30 6.48 16 3 C -0.33 -11.60 6.13 -20.15 -0.12 -11.73 16 4 C 0.61 18.68 7.78 86.66 0.67 19.36 16 5 O -0.55 -17.18 12.12 -4.11 -0.05 -17.23 16 6 N -0.63 -16.49 5.43 -305.87 -1.66 -18.15 16 7 C 0.08 1.80 7.00 38.17 0.27 2.07 16 8 C -0.02 -0.41 10.91 83.55 0.91 0.50 16 9 N -0.34 -4.64 6.86 -56.71 -0.39 -5.03 16 10 H 0.47 2.13 8.96 -220.00 -1.97 0.16 16 11 N -0.22 -4.13 12.23 -48.08 -0.59 -4.71 16 12 C -0.05 -1.09 7.17 42.44 0.30 -0.78 16 13 C 0.58 12.16 8.33 70.22 0.59 12.74 16 14 O -0.53 -13.02 16.14 19.77 0.32 -12.70 16 15 O -0.49 -7.16 13.44 -56.69 -0.76 -7.92 16 16 C 0.08 2.69 11.50 85.65 0.99 3.67 16 17 N -0.33 -14.53 12.50 -56.27 -0.70 -15.23 16 18 N -0.34 -15.30 3.56 -336.68 -1.20 -16.50 16 19 C 0.27 13.56 5.97 85.64 0.51 14.07 16 20 C -0.56 -30.30 9.39 25.60 0.24 -30.06 16 21 H 0.05 2.94 7.81 -2.92 -0.02 2.92 16 22 C 0.03 1.35 5.46 84.65 0.46 1.81 16 23 N -0.92 -50.78 13.29 21.45 0.28 -50.50 16 24 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 27 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 28 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.07 2.43 7.05 -2.39 -0.02 2.42 16 30 H 0.11 3.29 6.50 -2.39 -0.02 3.28 16 31 H 0.42 10.54 6.10 -92.71 -0.57 9.98 16 32 H 0.22 4.08 6.01 -2.92 -0.02 4.07 16 33 H 0.44 1.84 9.11 -74.06 -0.67 1.16 16 34 H 0.22 5.48 7.50 -2.91 -0.02 5.46 16 35 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 2.75 7.02 -2.39 -0.02 2.73 16 37 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -71.07 333.31 1.06 -70.01 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -2.01 Total: 17.89 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 5.79 Total: 15.87 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -4.26 Total: -110.13 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.49 Total: -37.86 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -71.07 1.06 -70.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594258982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.146 kcal (2) G-P(sol) polarization free energy of solvation -71.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds