Wall clock time and date at job start Tue Mar 31 2020 12:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48497 * 109.46957 * 269.99793 * 3 2 1 5 5 H 1.48496 * 109.47204 * 30.00167 * 3 2 1 6 6 H 1.48503 * 109.46812 * 150.00040 * 3 2 1 7 7 C 1.37878 * 119.99479 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99587 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00163 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46610 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.96940 * 125.00265 * 10 9 7 12 12 C 1.35237 * 107.85941 * 179.73198 * 11 10 9 13 13 C 1.40416 * 107.86796 * 0.26441 * 12 11 10 14 14 N 1.40151 * 125.97476 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00099 * 0.02562 * 14 13 12 16 16 O 1.21297 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00092 * 180.02562 * 15 14 13 18 18 N 1.46500 * 109.46782 * 179.97438 * 17 15 14 19 19 C 1.35045 * 124.87763 * 124.72169 * 18 17 15 20 20 C 1.35348 * 107.24560 * 179.89117 * 19 18 17 21 21 C 1.41544 * 105.49724 * 0.35012 * 20 19 18 22 22 C 1.47587 * 126.52606 * 179.75231 * 21 20 19 23 23 O 1.21490 * 119.99539 * 0.02562 * 22 21 20 24 24 O 1.34727 * 120.00122 * 179.97438 * 22 21 20 25 25 N 1.28469 * 124.88264 * 305.01946 * 18 17 15 26 26 N 1.31213 * 108.04995 * 359.97438 * 13 12 11 27 27 H 0.97001 * 119.99807 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46699 * 60.00648 * 9 7 2 29 29 H 1.08992 * 109.47326 * 299.99843 * 9 7 2 30 30 H 1.08002 * 126.07481 * 0.02562 * 11 10 9 31 31 H 1.08000 * 126.07181 * 180.26563 * 12 11 10 32 32 H 0.96994 * 120.00376 * 179.97438 * 14 13 12 33 33 H 1.08999 * 109.47079 * 299.99787 * 17 15 14 34 34 H 1.08996 * 109.47215 * 59.99662 * 17 15 14 35 35 H 1.08007 * 126.38119 * 0.03340 * 19 18 17 36 36 H 1.07991 * 127.25430 * 180.09262 * 20 19 18 37 37 H 0.96700 * 116.99928 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.2426 -4.6228 0.8925 12 6 3.2572 -5.4461 0.5436 13 6 3.8661 -4.9165 -0.6055 14 7 4.9588 -5.4691 -1.2872 15 6 5.5191 -6.6131 -0.8471 16 8 5.0779 -7.1643 0.1392 17 6 6.6946 -7.2070 -1.5798 18 7 7.1168 -8.4387 -0.9083 19 6 7.2279 -9.6448 -1.5057 20 6 7.6433 -10.5227 -0.5630 21 6 7.7639 -9.7689 0.6289 22 6 8.1835 -10.2755 1.9501 23 8 8.4667 -11.4488 2.0887 24 8 8.2535 -9.4368 3.0021 25 7 7.4294 -8.5279 0.3346 26 7 3.2331 -3.8137 -0.9294 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 1.5787 -4.7533 1.7343 31 1 3.5476 -6.3506 1.0574 32 1 5.3115 -5.0286 -2.0761 33 1 6.4063 -7.4329 -2.6064 34 1 7.5190 -6.4941 -1.5824 35 1 7.0254 -9.8670 -2.5430 36 1 7.8373 -11.5772 -0.6919 37 1 8.5337 -9.8146 3.8469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:28 Heat of formation + Delta-G solvation = 24.030319 kcal Electronic energy + Delta-G solvation = -24980.654060 eV Core-core repulsion = 20954.551113 eV Total energy + Delta-G solvation = -4026.102947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.111 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.75698 -42.22508 -40.95765 -40.48591 -37.13463 -36.30674 -35.31522 -34.66073 -32.82669 -31.78186 -31.00633 -29.76444 -28.40720 -25.83181 -24.85822 -23.23703 -22.47986 -22.02496 -21.48732 -20.96928 -18.96020 -18.84805 -18.67436 -18.46990 -18.10880 -17.44883 -17.07627 -16.79040 -16.70926 -16.26829 -15.90378 -15.62302 -14.92801 -14.74494 -14.48606 -14.42115 -14.28251 -14.08155 -13.85481 -13.75266 -13.33605 -12.93717 -12.73899 -12.64184 -12.30365 -12.08929 -12.00740 -11.88516 -11.66246 -11.41988 -11.13080 -10.72857 -10.31897 -10.11757 -9.79096 -9.16135 -8.33874 -6.47981 0.24878 0.88335 0.93599 1.25355 1.36096 1.38819 1.40633 1.49864 1.53509 2.11104 2.14752 2.17853 2.29985 2.40014 2.98226 3.29882 3.52582 3.92519 3.97467 4.09658 4.12825 4.24733 4.46900 4.69116 4.72299 4.75962 4.86495 4.90671 5.01060 5.11333 5.29022 5.45681 5.55765 5.75610 5.79444 5.89161 6.20274 6.26036 6.63303 6.73338 6.92214 7.03469 7.09188 7.22124 8.73892 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.002257 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.903919 B =12405.182850 C =12653.561471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.272 3.728 10 N -0.344 5.344 11 C 0.054 3.946 12 C -0.294 4.294 13 C 0.268 3.732 14 N -0.615 5.615 15 C 0.503 3.497 16 O -0.533 6.533 17 C 0.112 3.888 18 N -0.271 5.271 19 C 0.011 3.989 20 C -0.190 4.190 21 C -0.045 4.045 22 C 0.578 3.422 23 O -0.537 6.537 24 O -0.504 6.504 25 N -0.244 5.244 26 N -0.339 5.339 27 H 0.273 0.727 28 H 0.023 0.977 29 H 0.056 0.944 30 H 0.197 0.803 31 H 0.161 0.839 32 H 0.432 0.568 33 H 0.202 0.798 34 H 0.164 0.836 35 H 0.242 0.758 36 H 0.179 0.821 37 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.179 -18.083 -6.017 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.072 0.928 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.094 4.094 12 C -0.325 4.325 13 C 0.013 3.987 14 N -0.266 5.266 15 C 0.288 3.712 16 O -0.407 6.407 17 C -0.011 4.011 18 N -0.061 5.061 19 C -0.129 4.129 20 C -0.217 4.217 21 C -0.202 4.202 22 C 0.421 3.579 23 O -0.426 6.426 24 O -0.317 6.317 25 N -0.082 5.082 26 N -0.170 5.170 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.214 0.786 31 H 0.178 0.822 32 H 0.271 0.729 33 H 0.219 0.781 34 H 0.181 0.819 35 H 0.258 0.742 36 H 0.196 0.804 37 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 15.380 -16.313 -6.029 23.216 hybrid contribution 0.318 -0.430 0.855 1.008 sum 15.698 -16.743 -5.173 23.527 Atomic orbital electron populations 1.69999 1.07241 1.28788 1.49932 1.25753 0.95846 1.02776 0.93895 0.85335 0.78322 0.78067 0.78626 1.19591 1.19877 1.19741 1.21390 0.93399 0.90886 1.52824 0.92833 1.19343 0.85675 0.81511 0.98109 1.48849 1.23850 1.20244 1.19629 1.23126 1.00581 0.89015 0.96714 1.21660 1.02422 1.06357 1.02105 1.19364 0.91845 0.93083 0.94413 1.42345 1.28800 1.24667 1.30833 1.21322 0.84933 0.79763 0.85135 1.90768 1.62510 1.60779 1.26602 1.22235 0.96228 0.84750 0.97884 1.45330 1.45585 1.09875 1.05266 1.23710 1.03975 0.82616 1.02641 1.22057 1.07661 1.02182 0.89828 1.21004 1.12963 0.92212 0.94009 1.19445 0.72376 0.82576 0.83512 1.90876 1.48098 1.18385 1.85216 1.84659 1.80489 1.44460 1.22105 1.73762 1.13908 1.21492 0.99012 1.77240 1.04529 1.17818 1.17396 0.91838 0.95865 0.92603 0.78634 0.82161 0.72902 0.78143 0.81891 0.74211 0.80393 0.70516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.58 13.29 21.45 0.28 -51.29 16 2 C 0.02 0.96 5.46 84.65 0.46 1.42 16 3 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -30.31 9.23 25.60 0.24 -30.07 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.27 13.89 6.26 85.63 0.54 14.43 16 10 N -0.34 -15.75 3.67 -351.85 -1.29 -17.05 16 11 C 0.05 2.12 11.44 83.52 0.96 3.07 16 12 C -0.29 -11.22 9.61 22.11 0.21 -11.00 16 13 C 0.27 9.81 8.11 133.33 1.08 10.89 16 14 N -0.61 -14.54 5.45 -307.50 -1.68 -16.21 16 15 C 0.50 10.76 7.80 87.66 0.68 11.44 16 16 O -0.53 -17.12 12.77 -3.08 -0.04 -17.16 16 17 C 0.11 0.91 6.88 85.63 0.59 1.50 16 18 N -0.27 -4.26 3.17 -351.68 -1.12 -5.38 16 19 C 0.01 0.12 11.40 83.53 0.95 1.07 16 20 C -0.19 -3.22 10.81 22.42 0.24 -2.97 16 21 C -0.04 -1.10 7.17 42.42 0.30 -0.79 16 22 C 0.58 14.48 8.34 70.29 0.59 15.07 16 23 O -0.54 -14.97 17.71 19.87 0.35 -14.61 16 24 O -0.50 -10.73 13.44 -56.37 -0.76 -11.48 16 25 N -0.24 -6.11 10.89 -48.22 -0.53 -6.64 16 26 N -0.34 -14.86 12.42 -54.45 -0.68 -15.54 16 27 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 2.81 8.07 -2.39 -0.02 2.79 16 30 H 0.20 6.18 8.06 -2.91 -0.02 6.16 16 31 H 0.16 6.11 5.91 -2.91 -0.02 6.09 16 32 H 0.43 6.63 8.82 -92.71 -0.82 5.81 16 33 H 0.20 -0.76 8.04 -2.39 -0.02 -0.78 16 34 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.24 -0.28 8.06 -2.91 -0.02 -0.31 16 36 H 0.18 2.39 8.06 -2.92 -0.02 2.37 16 37 H 0.43 4.40 9.11 -74.06 -0.67 3.72 16 Total: -1.00 -88.39 342.70 3.09 -85.30 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -0.33 Total: 11.14 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 6.84 Total: 14.05 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -5.00 Total: -112.11 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.45 Total: -43.26 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -88.39 3.09 -85.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.329 kcal (2) G-P(sol) polarization free energy of solvation -88.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds