Wall clock time and date at job start Tue Mar 31 2020 12:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99957 * 2 1 4 4 H 1.48494 * 109.47072 * 270.00432 * 3 2 1 5 5 H 1.48507 * 109.46536 * 30.00075 * 3 2 1 6 6 H 1.48498 * 109.47084 * 149.99634 * 3 2 1 7 7 C 1.37878 * 120.00627 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99587 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00163 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46610 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.96940 * 125.00265 * 10 9 7 12 12 C 1.35237 * 107.85941 * 179.73198 * 11 10 9 13 13 C 1.40416 * 107.86796 * 0.26441 * 12 11 10 14 14 N 1.40151 * 125.97476 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00099 * 0.02562 * 14 13 12 16 16 O 1.21297 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00092 * 180.02562 * 15 14 13 18 18 N 1.46500 * 109.46782 * 179.97438 * 17 15 14 19 19 C 1.34226 * 125.74066 * 124.99909 * 18 17 15 20 20 C 1.38126 * 107.40752 * 179.97438 * 19 18 17 21 21 C 1.47292 * 126.42739 * 179.97438 * 20 19 18 22 22 O 1.21524 * 119.99792 * 359.97438 * 21 20 19 23 23 O 1.34750 * 119.99902 * 179.97438 * 21 20 19 24 24 C 1.41343 * 107.14661 * 0.02562 * 20 19 18 25 25 N 1.30434 * 108.01246 * 359.75508 * 24 20 19 26 26 N 1.31213 * 108.04995 * 359.97438 * 13 12 11 27 27 H 0.97001 * 120.00298 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46699 * 60.00648 * 9 7 2 29 29 H 1.08992 * 109.47326 * 299.99843 * 9 7 2 30 30 H 1.08002 * 126.07481 * 0.02562 * 11 10 9 31 31 H 1.08000 * 126.07181 * 180.26563 * 12 11 10 32 32 H 0.96994 * 120.00376 * 179.97438 * 14 13 12 33 33 H 1.08999 * 109.47079 * 299.99787 * 17 15 14 34 34 H 1.08996 * 109.47215 * 59.99662 * 17 15 14 35 35 H 1.08000 * 126.29683 * 359.96771 * 19 18 17 36 36 H 0.96703 * 116.99965 * 180.02562 * 23 21 20 37 37 H 1.07995 * 125.99243 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.8546 -3.1139 -0.8960 12 6 5.0605 -4.4044 -0.5480 13 6 4.2978 -4.6677 0.6012 14 7 4.2302 -5.8908 1.2821 15 6 4.9408 -6.9478 0.8410 16 8 5.6383 -6.8406 -0.1455 17 6 4.8677 -8.2632 1.5729 18 7 5.7230 -9.2442 0.9004 19 6 6.7067 -9.9525 1.4769 20 6 7.2620 -10.7579 0.5018 21 6 8.3749 -11.7062 0.6799 22 8 8.8952 -11.8345 1.7706 23 8 8.8160 -12.4315 -0.3666 24 6 6.5629 -10.5004 -0.6994 25 7 5.6487 -9.6041 -0.4497 26 7 3.6594 -3.5683 0.9261 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8746 -0.6799 -0.8911 30 1 5.2992 -2.6036 -1.7376 31 1 5.6984 -5.1078 -1.0626 32 1 3.6728 -5.9765 2.0712 33 1 5.2078 -8.1271 2.5995 34 1 3.8380 -8.6207 1.5757 35 1 7.0085 -9.9019 2.5126 36 1 9.5483 -13.0409 -0.2008 37 1 6.7502 -10.9668 -1.6552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:31 Heat of formation + Delta-G solvation = 21.278254 kcal Electronic energy + Delta-G solvation = -24737.877442 eV Core-core repulsion = 20711.655156 eV Total energy + Delta-G solvation = -4026.222286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.111 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.58871 -42.18790 -40.75290 -40.32689 -36.90976 -36.30751 -35.24460 -34.63329 -33.12354 -31.52450 -31.04656 -29.72097 -28.55246 -25.12234 -24.53215 -23.42080 -22.39835 -21.64580 -21.42055 -21.00289 -19.19468 -19.09525 -18.47486 -18.28305 -18.07270 -17.17485 -16.98714 -16.60769 -16.42952 -16.14644 -15.71291 -15.65656 -15.24276 -14.85171 -14.66210 -14.44115 -14.30256 -13.95733 -13.87170 -13.82476 -13.41564 -13.00079 -12.54684 -12.46688 -12.33517 -12.21839 -11.84666 -11.66067 -11.50240 -11.38580 -11.18310 -10.87881 -10.58502 -9.88321 -9.80760 -9.15007 -8.38294 -6.48662 0.29576 0.86617 0.93508 1.16799 1.34863 1.35881 1.39000 1.46783 1.52063 2.15592 2.22763 2.28056 2.28884 2.34727 2.94237 3.35203 3.60361 3.76190 3.91738 4.01497 4.12650 4.18001 4.25613 4.42479 4.58845 4.72383 4.84345 4.86725 4.88262 5.09759 5.23346 5.39383 5.65138 5.70291 5.84654 5.97891 6.18183 6.37887 6.49846 6.56941 6.90168 7.05952 7.13511 7.14349 8.78577 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.042703 B = 0.002022 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.533110 B =13847.217346 C =14000.734279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.547 4.547 8 H 0.027 0.973 9 C 0.239 3.761 10 N -0.344 5.344 11 C 0.059 3.941 12 C -0.295 4.295 13 C 0.267 3.733 14 N -0.619 5.619 15 C 0.504 3.496 16 O -0.530 6.530 17 C 0.121 3.879 18 N -0.350 5.350 19 C 0.156 3.844 20 C -0.309 4.309 21 C 0.571 3.429 22 O -0.562 6.562 23 O -0.508 6.508 24 C 0.099 3.901 25 N -0.311 5.311 26 N -0.343 5.343 27 H 0.272 0.728 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.207 0.793 31 H 0.163 0.837 32 H 0.430 0.570 33 H 0.191 0.809 34 H 0.158 0.842 35 H 0.227 0.773 36 H 0.432 0.568 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.319 -21.124 3.758 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.162 1.162 7 C -0.585 4.585 8 H 0.046 0.954 9 C 0.119 3.881 10 N -0.126 5.126 11 C -0.089 4.089 12 C -0.326 4.326 13 C 0.012 3.988 14 N -0.270 5.270 15 C 0.290 3.710 16 O -0.403 6.403 17 C -0.003 4.003 18 N -0.128 5.128 19 C 0.004 3.996 20 C -0.322 4.322 21 C 0.418 3.582 22 O -0.455 6.455 23 O -0.322 6.322 24 C -0.090 4.090 25 N -0.128 5.128 26 N -0.173 5.173 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.224 0.776 31 H 0.181 0.819 32 H 0.269 0.731 33 H 0.208 0.792 34 H 0.175 0.825 35 H 0.244 0.756 36 H 0.294 0.706 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 14.570 -19.264 3.643 24.426 hybrid contribution 0.968 -0.433 0.051 1.062 sum 15.538 -19.697 3.694 25.358 Atomic orbital electron populations 1.70043 1.08533 1.28808 1.50592 1.25917 0.95777 1.03524 0.93255 0.85624 0.79526 0.77276 0.79996 1.17908 1.20616 1.16206 1.21215 0.90441 0.93741 1.53072 0.95439 1.19892 0.94208 0.74334 0.99637 1.48512 1.33940 1.10110 1.20000 1.23226 0.94393 0.94790 0.96523 1.21707 1.11808 0.97155 1.01890 1.19422 0.97341 0.87431 0.94576 1.42421 1.47622 1.06122 1.30876 1.21336 0.78947 0.85543 0.85185 1.90735 1.39844 1.83289 1.26420 1.21972 0.99144 0.81805 0.97362 1.48121 1.26620 1.30687 1.07333 1.23515 0.86402 0.89068 1.00579 1.19402 1.06571 1.10369 0.95813 1.19620 0.80325 0.77416 0.80853 1.90878 1.59019 1.67633 1.28000 1.84513 1.53961 1.53845 1.39832 1.24576 0.91386 0.93360 0.99696 1.77420 1.24526 1.17361 0.93535 1.77304 1.25516 0.96806 1.17717 0.91873 0.93518 0.90233 0.77590 0.81941 0.73141 0.79226 0.82480 0.75626 0.70642 0.77124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 2 C 0.01 0.79 5.47 84.66 0.46 1.26 16 3 Si 0.95 40.12 27.47 68.60 1.88 42.01 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.24 -9.01 6.54 99.48 0.65 -8.36 16 7 C -0.55 -31.07 9.79 25.60 0.25 -30.82 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C 0.24 10.85 5.33 85.63 0.46 11.31 16 10 N -0.34 -15.02 3.67 -351.85 -1.29 -16.31 16 11 C 0.06 2.13 11.44 83.52 0.96 3.09 16 12 C -0.29 -10.87 9.61 22.11 0.21 -10.66 16 13 C 0.27 9.88 8.11 133.33 1.08 10.96 16 14 N -0.62 -15.44 5.45 -307.50 -1.68 -17.12 16 15 C 0.50 11.25 7.82 87.66 0.69 11.93 16 16 O -0.53 -16.85 12.83 -3.08 -0.04 -16.89 16 17 C 0.12 1.20 6.97 85.63 0.60 1.80 16 18 N -0.35 -5.74 3.37 -349.98 -1.18 -6.91 16 19 C 0.16 2.13 11.25 84.30 0.95 3.08 16 20 C -0.31 -5.39 6.13 -20.16 -0.12 -5.51 16 21 C 0.57 9.97 8.33 70.20 0.58 10.55 16 22 O -0.56 -12.60 17.69 19.76 0.35 -12.25 16 23 O -0.51 -5.95 13.28 -56.61 -0.75 -6.71 16 24 C 0.10 1.86 11.87 85.66 1.02 2.88 16 25 N -0.31 -7.15 11.56 -56.25 -0.65 -7.80 16 26 N -0.34 -15.17 12.42 -54.45 -0.68 -15.84 16 27 H 0.27 15.28 8.31 -92.71 -0.77 14.50 16 28 H 0.05 2.07 7.20 -2.39 -0.02 2.05 16 29 H 0.08 3.12 7.50 -2.39 -0.02 3.10 16 30 H 0.21 5.58 8.06 -2.91 -0.02 5.56 16 31 H 0.16 5.95 5.91 -2.91 -0.02 5.94 16 32 H 0.43 7.52 8.82 -92.71 -0.82 6.70 16 33 H 0.19 -0.17 8.06 -2.39 -0.02 -0.19 16 34 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.23 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.43 1.14 9.11 -74.06 -0.67 0.47 16 37 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -91.87 339.83 3.01 -88.85 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.38 Total: 16.13 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 7.13 Total: 9.86 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -5.17 Total: -121.01 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.44 Total: -35.84 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.88 Total: 42.01 kcal Total: -91.87 3.01 -88.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.129 kcal (2) G-P(sol) polarization free energy of solvation -91.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds