Wall clock time and date at job start Tue Mar 31 2020 12:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38906 * 119.48293 * 2 1 4 4 C 1.36815 * 120.30646 * 179.57224 * 3 2 1 5 5 C 1.38697 * 119.62700 * 0.68314 * 4 3 2 6 6 S 1.76252 * 134.18823 * 179.27449 * 5 4 3 7 7 N 1.56011 * 97.55949 * 179.97438 * 6 5 4 8 8 C 1.29685 * 111.74194 * 359.97438 * 7 6 5 9 9 C 1.47383 * 121.82642 * 179.97438 * 8 7 6 10 10 O 1.21616 * 119.99800 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00073 * 0.02562 * 9 8 7 12 12 C 1.46500 * 119.99910 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47297 * 34.99871 * 12 11 9 14 14 C 1.53006 * 109.46998 * 275.00232 * 12 11 9 15 15 C 1.52997 * 109.47007 * 155.00372 * 12 11 9 16 16 N 1.46503 * 109.47014 * 304.99673 * 15 12 11 17 17 C 1.36940 * 119.99764 * 179.97438 * 16 15 12 18 18 H 1.07997 * 119.99788 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99542 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00058 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99644 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47525 * 89.99677 * 21 19 17 23 23 H 1.48499 * 109.47075 * 210.00180 * 21 19 17 24 24 H 1.48509 * 109.46937 * 329.99544 * 21 19 17 25 25 C 1.40676 * 120.66296 * 359.51608 * 5 4 3 26 26 C 1.36336 * 119.48225 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47116 * 269.98195 * 1 2 3 28 28 H 1.08999 * 109.46999 * 29.98423 * 1 2 3 29 29 H 1.08999 * 109.47200 * 149.97882 * 1 2 3 30 30 H 1.07997 * 119.84613 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.18115 * 179.97438 * 4 3 2 32 32 H 0.96995 * 119.99797 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.47002 * 179.97438 * 14 12 11 34 34 H 1.08993 * 109.46955 * 300.00226 * 14 12 11 35 35 H 1.09000 * 109.47050 * 60.00054 * 14 12 11 36 36 H 1.08998 * 109.47192 * 65.00173 * 15 12 11 37 37 H 1.08998 * 109.46934 * 185.00019 * 15 12 11 38 38 H 0.96997 * 120.00215 * 0.02562 * 16 15 12 39 39 H 0.97008 * 119.99319 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.02165 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1907 1.2092 0.0000 4 6 3.5586 1.2289 0.0088 5 6 4.2616 0.0333 0.0034 6 16 5.9737 -0.3852 -0.0052 7 7 5.8059 -1.9362 -0.0066 8 6 4.5566 -2.2843 -0.0007 9 6 4.1440 -3.6992 -0.0012 10 8 2.9627 -3.9880 0.0040 11 7 5.0758 -4.6729 -0.0074 12 6 4.6656 -6.0793 -0.0073 13 1 3.7527 -6.1916 -0.5922 14 6 4.4094 -6.5357 1.4305 15 6 5.7747 -6.9340 -0.6238 16 7 6.1027 -6.4213 -1.9564 17 6 7.0744 -7.0309 -2.7044 18 1 7.5985 -7.8898 -2.3121 19 6 7.3855 -6.5447 -3.9668 20 7 6.7463 -5.4983 -4.4450 21 14 8.7105 -7.3767 -4.9876 22 1 8.0976 -8.4420 -5.8209 23 1 9.3610 -6.3726 -5.8673 24 1 9.7264 -7.9767 -4.0857 25 6 3.5821 -1.1985 -0.0008 26 6 2.1780 -1.1868 -0.0005 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6398 2.1381 0.0004 31 1 4.0881 2.1702 0.0084 32 1 6.0180 -4.4425 -0.0111 33 1 4.1038 -7.5820 1.4305 34 1 5.3223 -6.4234 2.0154 35 1 3.6193 -5.9267 1.8697 36 1 6.6605 -6.8920 0.0100 37 1 5.4349 -7.9665 -0.7052 38 1 5.6322 -5.6497 -2.3085 39 1 6.9636 -5.1589 -5.3274 40 1 1.6299 -2.1174 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754237682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:42 Heat of formation + Delta-G solvation = 1.663944 kcal Electronic energy + Delta-G solvation = -23778.492077 eV Core-core repulsion = 20297.712466 eV Total energy + Delta-G solvation = -3480.779612 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.75061 -40.36464 -38.28299 -37.67885 -35.52461 -33.62509 -33.07416 -31.89193 -31.53617 -27.99977 -27.51301 -27.13505 -24.63912 -24.11686 -22.73123 -21.82166 -21.41183 -19.62196 -19.28152 -18.60507 -17.56608 -16.94360 -16.78608 -16.60334 -16.32684 -15.68465 -15.50003 -15.30359 -15.11560 -15.01917 -14.79447 -14.37951 -14.00701 -13.70233 -13.56351 -13.14515 -13.11872 -13.01266 -12.81786 -12.79951 -12.68263 -12.58096 -12.34356 -12.18666 -11.94278 -11.74795 -11.73646 -11.09834 -10.96462 -10.77219 -10.18988 -9.96442 -9.05646 -8.88946 -7.97155 -5.27788 -0.77802 0.01463 0.28177 0.56062 0.63575 1.45102 1.47417 1.55782 1.92304 2.05940 2.53506 2.58987 3.18360 3.36931 3.52990 3.75110 3.86241 3.94519 4.00634 4.21578 4.25005 4.35538 4.37905 4.45635 4.72033 4.75231 4.78509 4.82386 4.87681 4.88867 4.99070 5.04582 5.13844 5.18979 5.25952 5.29508 5.44760 5.47728 5.56850 5.85148 6.22639 6.38412 6.99154 7.29462 8.02617 8.26317 9.26138 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.003495 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.710896 B = 8010.511193 C = 8775.416894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.081 4.081 4 C -0.066 4.066 5 C -0.219 4.219 6 S 0.430 5.570 7 N -0.511 5.511 8 C 0.064 3.936 9 C 0.585 3.415 10 O -0.556 6.556 11 N -0.690 5.690 12 C 0.137 3.863 13 H 0.069 0.931 14 C -0.145 4.145 15 C 0.145 3.855 16 N -0.746 5.746 17 C -0.246 4.246 18 H 0.081 0.919 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.977 3.023 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.266 1.266 25 C -0.107 4.107 26 C -0.074 4.074 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.177 0.823 31 H 0.171 0.829 32 H 0.409 0.591 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.047 0.953 38 H 0.372 0.628 39 H 0.250 0.750 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 16.411 14.342 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.104 4.104 4 C -0.087 4.087 5 C -0.340 4.340 6 S 0.590 5.410 7 N -0.339 5.339 8 C -0.123 4.123 9 C 0.367 3.633 10 O -0.435 6.435 11 N -0.340 5.340 12 C 0.033 3.967 13 H 0.087 0.913 14 C -0.204 4.204 15 C 0.018 3.982 16 N -0.389 5.389 17 C -0.377 4.377 18 H 0.099 0.901 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.806 3.194 22 H -0.214 1.214 23 H -0.224 1.224 24 H -0.191 1.191 25 C -0.118 4.118 26 C -0.096 4.096 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.194 0.806 31 H 0.188 0.812 32 H 0.245 0.755 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.203 0.797 39 H 0.058 0.942 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.828 16.172 14.323 22.978 hybrid contribution -0.558 -0.902 -1.116 1.540 sum -8.386 15.270 13.207 21.862 Atomic orbital electron populations 1.20911 0.88306 1.04091 1.03720 1.20049 0.98320 0.92121 0.97720 1.21439 0.93503 0.98791 0.96623 1.20437 0.94337 0.95373 0.98587 1.24546 1.01491 0.98161 1.09765 1.80969 1.02188 0.92534 1.65322 1.71213 1.23932 1.19475 1.19245 1.21879 0.87263 0.95743 1.07386 1.17410 0.85558 0.83788 0.76588 1.90700 1.17395 1.83196 1.52174 1.45887 1.10118 1.06006 1.71961 1.21289 0.97877 0.79174 0.98367 0.91293 1.22009 1.02317 1.02560 0.93472 1.21154 0.95095 0.96035 0.85866 1.42564 1.44702 1.36251 1.15354 1.19668 1.11531 1.09430 0.97104 0.90077 1.25623 1.02771 0.99217 0.99213 1.69861 1.46198 1.27538 1.18517 0.85091 0.78824 0.77046 0.78473 1.21413 1.22394 1.19094 1.19696 0.95729 0.90225 1.06102 1.20702 0.90476 0.99846 0.98617 0.89529 0.88773 0.91869 0.80572 0.81191 0.75478 0.89325 0.91225 0.92652 0.94499 0.93536 0.79654 0.94164 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.98 71.24 0.71 -0.77 16 2 C -0.08 -1.56 5.84 -20.15 -0.12 -1.67 16 3 C -0.08 -1.16 9.63 22.10 0.21 -0.95 16 4 C -0.07 -1.10 10.03 22.05 0.22 -0.88 16 5 C -0.22 -5.44 6.73 22.98 0.15 -5.29 16 6 S 0.43 10.99 23.36 -56.49 -1.32 9.67 16 7 N -0.51 -17.51 10.49 -64.53 -0.68 -18.19 16 8 C 0.06 2.32 6.82 43.85 0.30 2.62 16 9 C 0.58 22.93 7.77 86.65 0.67 23.60 16 10 O -0.56 -23.17 14.67 -4.08 -0.06 -23.23 16 11 N -0.69 -26.13 4.51 -445.83 -2.01 -28.14 16 12 C 0.14 4.93 2.73 44.99 0.12 5.05 16 13 H 0.07 2.77 7.58 -2.39 -0.02 2.75 16 14 C -0.15 -3.99 9.48 71.98 0.68 -3.31 16 15 C 0.15 5.84 5.82 86.38 0.50 6.34 16 16 N -0.75 -39.07 5.43 -343.45 -1.87 -40.94 16 17 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 19 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 20 N -0.97 -61.56 13.06 21.65 0.28 -61.28 16 21 Si 0.98 47.05 29.55 68.60 2.03 49.07 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 C -0.11 -3.36 6.10 -20.17 -0.12 -3.48 16 26 C -0.07 -2.07 9.17 22.36 0.21 -1.86 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.76 8.08 -2.39 -0.02 0.74 16 29 H 0.06 0.94 8.07 -2.39 -0.02 0.92 16 30 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 31 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.41 15.88 8.04 -92.71 -0.75 15.13 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.37 21.40 7.33 -92.71 -0.68 20.72 16 39 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 40 H 0.13 3.95 6.64 -2.91 -0.02 3.93 16 Total: -1.00 -74.51 354.83 0.89 -73.62 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.34 Total: 37.13 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 4.85 Total: 2.29 kcal Atomic # 7 Polarization: -144.28 SS G_CDS: -4.27 Total: -148.55 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.06 Total: -23.23 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Atomic # 16 Polarization: 10.99 SS G_CDS: -1.32 Total: 9.67 kcal Total: -74.51 0.89 -73.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754237682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.281 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds