Wall clock time and date at job start Tue Mar 31 2020 12:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46990 * 2 1 4 4 C 1.50692 * 109.46941 * 239.99508 * 2 1 3 5 5 H 1.08002 * 120.00378 * 239.99820 * 4 2 1 6 6 C 1.37886 * 120.00071 * 60.00100 * 4 2 1 7 7 N 1.31509 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00046 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47215 * 59.99887 * 8 6 4 10 10 H 1.48503 * 109.46781 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46972 * 299.99683 * 8 6 4 12 12 N 1.46903 * 109.47317 * 119.99625 * 2 1 3 13 13 C 1.46896 * 110.99965 * 58.95122 * 12 2 1 14 14 C 1.46898 * 110.99729 * 295.00198 * 12 2 1 15 15 N 1.46506 * 109.46756 * 204.99903 * 14 12 2 16 16 C 1.36891 * 121.32270 * 257.93252 * 15 14 12 17 17 C 1.47732 * 121.26556 * 0.03331 * 16 15 14 18 18 C 1.39634 * 119.75466 * 294.27752 * 17 16 15 19 19 C 1.38260 * 119.05167 * 179.79654 * 18 17 16 20 20 C 1.38904 * 118.53950 * 0.47520 * 19 18 17 21 21 C 1.38187 * 119.42198 * 359.74652 * 20 19 18 22 22 N 1.31788 * 120.92062 * 0.02562 * 21 20 19 23 23 C 1.34085 * 117.46288 * 179.78690 * 16 15 14 24 24 S 1.77315 * 105.35729 * 0.43495 * 23 16 15 25 25 C 1.34403 * 121.32371 * 78.22257 * 15 14 12 26 26 O 1.21796 * 127.35446 * 359.95820 * 25 15 14 27 27 H 1.08994 * 109.47414 * 60.00273 * 1 2 3 28 28 H 1.09000 * 109.47244 * 299.99924 * 1 2 3 29 29 H 1.09002 * 109.46996 * 180.02562 * 1 2 3 30 30 H 0.97004 * 120.00130 * 180.02562 * 7 6 4 31 31 H 1.09007 * 109.47075 * 60.00298 * 13 12 2 32 32 H 1.08998 * 109.47192 * 179.97438 * 13 12 2 33 33 H 1.09000 * 109.47211 * 300.00272 * 13 12 2 34 34 H 1.09001 * 109.47696 * 324.99433 * 14 12 2 35 35 H 1.08997 * 109.47334 * 85.00356 * 14 12 2 36 36 H 1.08005 * 120.47428 * 0.02562 * 18 17 16 37 37 H 1.07994 * 120.73043 * 180.22457 * 19 18 17 38 38 H 1.08002 * 120.28802 * 179.72552 * 20 19 18 39 39 H 1.08002 * 119.54179 * 179.97438 * 21 20 19 40 40 H 1.07998 * 127.31402 * 180.16242 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.8279 -2.5200 -4.0080 10 1 1.8277 -0.4195 -5.2204 11 1 3.8073 -1.1192 -4.0077 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2461 14 6 1.6487 0.0393 2.4180 15 7 2.5926 -0.2870 3.4900 16 6 2.2637 -1.1694 4.4835 17 6 0.9428 -1.8303 4.5158 18 6 -0.2088 -1.0677 4.7204 19 6 -1.4378 -1.7006 4.7437 20 6 -1.4781 -3.0783 4.5718 21 6 -0.2994 -3.7731 4.3783 22 7 0.8599 -3.1467 4.3554 23 6 3.1879 -1.4148 5.4234 24 16 4.5824 -0.4116 4.9841 25 6 3.8136 0.2724 3.5402 26 8 4.2903 1.0772 2.7601 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7080 1.1606 -3.4844 31 1 1.8763 -2.6150 0.3649 32 1 1.9061 -2.5656 2.1437 33 1 0.4385 -2.0741 1.2641 34 1 1.6785 1.1111 2.2216 35 1 0.6416 -0.2467 2.7212 36 1 -0.1408 0.0018 4.8549 37 1 -2.3461 -1.1367 4.8964 38 1 -2.4225 -3.6021 4.5894 39 1 -0.3284 -4.8444 4.2448 40 1 3.0998 -2.0788 6.2707 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068619021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:48 Heat of formation + Delta-G solvation = 59.469129 kcal Electronic energy + Delta-G solvation = -25124.873285 eV Core-core repulsion = 21646.600294 eV Total energy + Delta-G solvation = -3478.272991 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06646 -39.70000 -37.29322 -36.71154 -33.01593 -32.70309 -32.02414 -30.43779 -28.62178 -26.89800 -25.34282 -25.25200 -23.70066 -23.54119 -22.39737 -20.32423 -19.36460 -18.65019 -16.97440 -16.75436 -16.53513 -16.06789 -15.73198 -15.67139 -14.96923 -14.70995 -14.37596 -14.13755 -14.08414 -13.70679 -13.66092 -13.38211 -13.10819 -12.47769 -12.23308 -11.97919 -11.62151 -11.28251 -11.22747 -11.17678 -10.88283 -10.83800 -10.64604 -10.19417 -10.10425 -10.00089 -9.75676 -9.71760 -9.47182 -9.31230 -8.98191 -8.43378 -7.77481 -7.41641 -6.05755 -4.09449 0.61065 1.02011 1.11324 1.47511 1.84789 2.41589 2.96904 3.31539 3.35521 3.39558 3.60150 3.91794 4.38867 4.47479 4.59770 4.78050 4.80933 4.88916 5.09478 5.16214 5.27034 5.37819 5.46685 5.49666 5.63200 5.76210 5.88449 6.04931 6.18443 6.26179 6.36992 6.52128 6.65077 6.78332 6.89954 6.94682 7.29854 7.56034 7.62706 7.67143 7.75809 7.97997 8.24228 8.44460 8.94452 9.55341 11.01578 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.004982 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.997074 B = 5619.227188 C = 7031.827889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.218 3.782 3 H 0.044 0.956 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.539 5.539 13 C 0.035 3.965 14 C 0.265 3.735 15 N -0.515 5.515 16 C 0.149 3.851 17 C 0.177 3.823 18 C -0.148 4.148 19 C -0.072 4.072 20 C -0.163 4.163 21 C 0.104 3.896 22 N -0.454 5.454 23 C -0.197 4.197 24 S -0.056 6.056 25 C 0.523 3.477 26 O -0.445 6.445 27 H 0.093 0.907 28 H 0.004 0.996 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.017 0.983 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.162 0.838 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -6.203 18.768 20.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.113 3.887 3 H 0.062 0.938 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.264 5.264 13 C -0.113 4.113 14 C 0.051 3.949 15 N -0.237 5.237 16 C 0.037 3.963 17 C 0.037 3.963 18 C -0.169 4.169 19 C -0.098 4.098 20 C -0.183 4.183 21 C -0.054 4.054 22 N -0.163 5.163 23 C -0.337 4.337 24 S 0.185 5.815 25 C 0.203 3.797 26 O -0.320 6.320 27 H 0.111 0.889 28 H 0.023 0.977 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.128 -5.813 18.432 19.579 hybrid contribution -2.667 -0.261 -1.277 2.968 sum -5.794 -6.074 17.155 19.099 Atomic orbital electron populations 1.22453 1.00500 0.99465 1.00665 1.19329 0.89711 0.94694 0.85005 0.93809 1.21002 1.30862 1.12623 0.89420 0.91941 1.24903 0.95120 0.95091 0.99000 1.69857 1.36865 1.22933 1.23667 0.86539 0.79388 0.79489 0.81894 1.20357 1.21306 1.20126 1.61970 1.60146 1.02526 1.01722 1.22309 0.96745 0.90420 1.01853 1.22340 0.88559 0.99670 0.84347 1.46325 1.15697 1.38153 1.23508 1.17249 0.94141 0.93982 0.90969 1.18941 0.90232 0.89662 0.97431 1.22145 0.92542 1.01450 1.00743 1.21542 0.97852 0.94739 0.95626 1.22282 1.00308 0.95111 1.00610 1.22780 0.87120 1.00574 0.94905 1.67808 1.28982 1.08699 1.10821 1.25030 0.93904 1.08978 1.05832 1.85916 1.21164 1.46425 1.27946 1.21955 0.83044 0.85370 0.89372 1.90975 1.64514 1.33848 1.42612 0.88880 0.97737 0.94909 0.92842 0.90515 0.93185 0.96493 0.88498 0.91773 0.84436 0.84265 0.84402 0.82130 0.79502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.34 37.16 0.31 -3.67 16 2 C 0.22 5.48 2.27 -68.87 -0.16 5.33 16 3 H 0.04 1.23 7.93 -51.93 -0.41 0.82 16 4 C -0.50 -13.80 7.94 -34.44 -0.27 -14.08 16 5 H 0.06 1.75 6.75 -52.49 -0.35 1.40 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 N -0.54 -11.85 4.84 -240.20 -1.16 -13.01 16 13 C 0.03 0.71 8.55 60.06 0.51 1.22 16 14 C 0.27 4.89 4.13 -63.31 -0.26 4.63 16 15 N -0.51 -8.72 2.80 -119.46 -0.33 -9.05 16 16 C 0.15 2.12 5.63 -83.19 -0.47 1.65 16 17 C 0.18 2.26 4.55 -83.02 -0.38 1.88 16 18 C -0.15 -1.58 8.03 -39.05 -0.31 -1.89 16 19 C -0.07 -0.62 10.16 -39.33 -0.40 -1.02 16 20 C -0.16 -1.33 10.11 -39.35 -0.40 -1.73 16 21 C 0.10 1.01 11.17 -17.59 -0.20 0.82 16 22 N -0.45 -5.77 9.54 -9.85 -0.09 -5.87 16 23 C -0.20 -2.46 11.30 29.27 0.33 -2.13 16 24 S -0.06 -0.81 23.18 -107.50 -2.49 -3.30 16 25 C 0.52 9.66 8.54 53.89 0.46 10.12 16 26 O -0.44 -9.82 17.75 5.10 0.09 -9.73 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 28 H 0.00 0.08 7.13 -51.93 -0.37 -0.30 16 29 H 0.03 0.74 6.38 -51.93 -0.33 0.41 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.08 1.69 6.53 -51.93 -0.34 1.35 16 32 H 0.05 0.95 6.00 -51.93 -0.31 0.64 16 33 H 0.02 0.33 6.27 -51.93 -0.33 0.01 16 34 H 0.10 1.87 7.68 -51.93 -0.40 1.47 16 35 H 0.06 1.07 4.81 -51.93 -0.25 0.82 16 36 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -31.69 340.46 -9.24 -40.93 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.66 Total: 0.31 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.33 Total: 2.70 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.96 Total: -52.61 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.49 Total: -3.30 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.69 -9.24 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068619021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.395 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds