Wall clock time and date at job start Tue Mar 31 2020 12:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.46968 * 2 1 4 4 C 1.34233 * 116.99734 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00074 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99721 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.33887 * 23.59108 * 6 4 3 8 8 C 1.53241 * 109.40895 * 263.78305 * 6 4 3 9 9 S 1.81901 * 108.50767 * 177.87833 * 8 6 4 10 10 C 1.81902 * 101.91183 * 51.30695 * 9 8 6 11 11 C 1.53251 * 108.50354 * 308.69610 * 10 9 8 12 12 N 1.46469 * 109.40063 * 143.38669 * 6 4 3 13 13 C 1.46897 * 111.00295 * 317.88791 * 12 6 4 14 14 C 1.53007 * 109.47054 * 301.85471 * 13 12 6 15 15 C 1.52992 * 109.47219 * 180.02562 * 14 13 12 16 16 S 1.80999 * 109.47250 * 180.02562 * 15 14 13 17 17 C 1.76199 * 100.00235 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99836 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00207 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00362 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00028 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47167 * 89.99951 * 21 19 17 23 23 H 1.48501 * 109.47116 * 209.99637 * 21 19 17 24 24 H 1.48493 * 109.47219 * 329.99543 * 21 19 17 25 25 H 1.09002 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46886 * 299.99955 * 1 2 3 27 27 H 1.08996 * 109.47190 * 60.00071 * 1 2 3 28 28 H 1.09002 * 109.46886 * 240.00044 * 2 1 3 29 29 H 1.08996 * 109.47190 * 119.99929 * 2 1 3 30 30 H 1.09005 * 109.63402 * 58.17229 * 8 6 4 31 31 H 1.09004 * 109.79750 * 297.67916 * 8 6 4 32 32 H 1.08998 * 109.63121 * 188.99221 * 10 9 8 33 33 H 1.09003 * 109.63199 * 68.39679 * 10 9 8 34 34 H 1.09002 * 109.40708 * 301.88535 * 11 10 9 35 35 H 1.09000 * 109.34022 * 182.08272 * 11 10 9 36 36 H 1.08998 * 109.47213 * 181.85905 * 13 12 6 37 37 H 1.08995 * 109.47396 * 61.85389 * 13 12 6 38 38 H 1.08998 * 109.46756 * 60.00154 * 14 13 12 39 39 H 1.08995 * 109.46952 * 300.00190 * 14 13 12 40 40 H 1.09007 * 109.47119 * 300.00274 * 15 14 13 41 41 H 1.09004 * 109.47054 * 59.99905 * 15 14 13 42 42 H 0.96991 * 120.00594 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.1875 3.6315 0.4108 8 6 4.2607 3.3473 -1.4369 9 16 4.8939 5.0525 -1.4165 10 6 6.1860 4.9579 -0.1396 11 6 5.5809 4.3262 1.1187 12 7 5.1310 2.9637 0.8245 13 6 4.9427 2.1929 2.0608 14 6 3.7585 2.7648 2.8429 15 6 3.5627 1.9625 4.1308 16 16 2.1614 2.6384 5.0557 17 6 2.1645 1.5589 6.4482 18 1 2.9008 0.7720 6.5198 19 6 1.2200 1.7191 7.4526 20 7 0.3223 2.6777 7.3651 21 14 1.2228 0.5740 8.9286 22 1 2.0881 1.1416 9.9937 23 1 -0.1624 0.4259 9.4428 24 1 1.7450 -0.7555 8.5227 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3636 3.2972 -2.0541 31 1 5.0211 2.6792 -1.8414 32 1 6.5469 5.9602 0.0911 33 1 7.0108 4.3420 -0.4982 34 1 4.7324 4.9238 1.4518 35 1 6.3344 4.2967 1.9058 36 1 5.8447 2.2563 2.6694 37 1 4.7445 1.1503 1.8123 38 1 2.8565 2.7014 2.2343 39 1 3.9567 3.8074 3.0914 40 1 3.3648 0.9196 3.8827 41 1 4.4649 2.0262 4.7393 42 1 -0.3375 2.7899 8.0672 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610409708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:18 Heat of formation + Delta-G solvation = -107.293959 kcal Electronic energy + Delta-G solvation = -23192.775507 eV Core-core repulsion = 19810.422326 eV Total energy + Delta-G solvation = -3382.353181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.10551 -39.62642 -37.60754 -34.94805 -34.61037 -33.35635 -32.36375 -30.93994 -27.86070 -26.43419 -26.13789 -24.21237 -23.60991 -22.69487 -20.99888 -19.62546 -19.08517 -18.18671 -17.79535 -17.01895 -16.91990 -16.74013 -16.64076 -16.07058 -15.98071 -15.30907 -15.18003 -14.74062 -14.61231 -14.44671 -14.19578 -13.73842 -13.66371 -13.51123 -13.23823 -13.22131 -12.98805 -12.87689 -12.83880 -12.61970 -12.55973 -12.50693 -12.47126 -11.81114 -11.62857 -11.54230 -11.40501 -11.17067 -10.77039 -10.40968 -9.58881 -8.76470 -8.70252 -8.39885 -6.16682 0.59930 0.93893 1.24490 1.29337 1.37239 1.46284 1.68682 1.69521 2.24821 2.52680 2.94492 3.26921 3.43509 3.56081 3.68404 3.82357 3.82638 3.96774 4.01433 4.03465 4.10749 4.16649 4.22704 4.29392 4.31525 4.47065 4.55691 4.60188 4.71951 4.76233 4.80141 4.89142 4.89697 4.94843 5.07850 5.15774 5.36955 5.37881 5.58292 5.76362 6.15333 6.58459 7.02471 8.69401 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.003611 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.269019 B = 7753.129309 C = 8958.199940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.361 6.361 4 C 0.472 3.528 5 O -0.511 6.511 6 C 0.097 3.903 7 H 0.087 0.913 8 C -0.062 4.062 9 S -0.266 6.266 10 C -0.069 4.069 11 C 0.050 3.950 12 N -0.528 5.528 13 C 0.055 3.945 14 C -0.123 4.123 15 C -0.084 4.084 16 S -0.189 6.189 17 C -0.541 4.541 18 H 0.070 0.930 19 C 0.019 3.981 20 N -0.906 5.906 21 Si 0.992 3.008 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.265 1.265 25 H 0.101 0.899 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.249 0.726 -18.383 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.277 6.277 4 C 0.313 3.687 5 O -0.399 6.399 6 C -0.015 4.015 7 H 0.104 0.896 8 C -0.211 4.211 9 S -0.038 6.038 10 C -0.218 4.218 11 C -0.078 4.078 12 N -0.254 5.254 13 C -0.075 4.075 14 C -0.163 4.163 15 C -0.233 4.233 16 S 0.039 5.961 17 C -0.689 4.689 18 H 0.088 0.912 19 C -0.186 4.186 20 N -0.542 5.542 21 Si 0.814 3.186 22 H -0.192 1.192 23 H -0.198 1.198 24 H -0.189 1.189 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.119 0.881 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.644 2.070 -19.476 21.025 hybrid contribution 0.229 -2.472 2.495 3.520 sum 7.873 -0.403 -16.981 18.722 Atomic orbital electron populations 1.21836 0.90772 1.04423 1.03546 1.23281 0.96955 0.78879 1.02533 1.86535 1.23845 1.34108 1.83253 1.23530 0.80888 0.92337 0.71950 1.90630 1.60735 1.43481 1.45036 1.21495 0.92709 0.90509 0.96766 0.89573 1.23365 1.05878 0.96595 0.95253 1.87081 1.47591 1.14557 1.54575 1.23660 0.97911 1.06153 0.94050 1.22457 1.00851 0.86551 0.97961 1.61448 1.29970 1.15922 1.18016 1.22475 0.98194 0.98097 0.88685 1.21905 0.99381 1.00290 0.94730 1.23058 1.00372 1.01132 0.98784 1.84599 1.40405 1.47222 1.23835 1.23024 1.19868 1.18626 1.07348 0.91151 1.26019 0.93857 0.97461 1.01270 1.70139 1.17087 1.32101 1.34874 0.85052 0.78078 0.78233 0.77285 1.19167 1.19789 1.18899 0.88029 0.92642 0.90313 0.89900 0.92402 0.85597 0.88137 0.84843 0.88062 0.92856 0.87030 0.88181 0.90525 0.92713 0.90547 0.93024 0.91362 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 10.29 71.98 0.74 -2.10 16 2 C 0.06 1.33 6.19 71.98 0.45 1.78 16 3 O -0.36 -9.87 10.22 -51.44 -0.53 -10.40 16 4 C 0.47 12.98 4.97 71.24 0.35 13.33 16 5 O -0.51 -16.10 14.55 21.96 0.32 -15.78 16 6 C 0.10 2.26 1.64 44.33 0.07 2.33 16 7 H 0.09 2.13 7.10 -2.39 -0.02 2.11 16 8 C -0.06 -1.19 5.95 72.06 0.43 -0.76 16 9 S -0.27 -4.97 22.40 -56.49 -1.27 -6.23 16 10 C -0.07 -1.03 6.69 72.07 0.48 -0.55 16 11 C 0.05 0.90 4.73 86.47 0.41 1.31 16 12 N -0.53 -12.03 4.36 -876.62 -3.83 -15.86 16 13 C 0.05 1.46 4.73 86.31 0.41 1.86 16 14 C -0.12 -3.93 4.54 30.59 0.14 -3.79 16 15 C -0.08 -3.40 5.67 71.98 0.41 -2.99 16 16 S -0.19 -10.04 21.44 -56.49 -1.21 -11.25 16 17 C -0.54 -31.31 9.50 67.95 0.65 -30.66 16 18 H 0.07 3.95 7.80 -2.91 -0.02 3.93 16 19 C 0.02 1.09 5.49 84.86 0.47 1.55 16 20 N -0.91 -54.36 13.22 21.65 0.29 -54.08 16 21 Si 0.99 43.78 29.55 68.60 2.03 45.81 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.68 8.13 -2.39 -0.02 1.66 16 29 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 30 H 0.13 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.06 7.19 -2.39 -0.02 1.04 16 35 H 0.11 1.71 7.79 -2.39 -0.02 1.69 16 36 H 0.10 2.38 7.89 -2.39 -0.02 2.36 16 37 H 0.08 2.38 5.50 -2.39 -0.01 2.36 16 38 H 0.05 1.87 6.14 -2.39 -0.01 1.86 16 39 H 0.08 2.36 7.03 -2.39 -0.02 2.34 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -69.45 361.75 1.80 -67.65 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 1.00 Total: 18.83 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 5.00 Total: -18.68 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -3.54 Total: -69.94 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.21 Total: -26.18 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -15.00 SS G_CDS: -2.48 Total: -17.48 kcal Total: -69.45 1.80 -67.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610409708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.648 kcal (2) G-P(sol) polarization free energy of solvation -69.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds