Wall clock time and date at job start Tue Mar 31 2020 12:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47282 * 2 1 4 4 N 1.28438 * 125.18850 * 262.32713 * 3 2 1 5 5 C 1.30864 * 110.93305 * 180.02562 * 4 3 2 6 6 C 1.39673 * 107.86128 * 359.73439 * 5 4 3 7 7 C 1.36604 * 125.18878 * 82.32732 * 3 2 1 8 8 C 1.47124 * 126.88443 * 359.97438 * 7 3 2 9 9 O 1.21653 * 119.99691 * 174.49294 * 8 7 3 10 10 N 1.34778 * 120.00322 * 354.49293 * 8 7 3 11 11 C 1.39993 * 120.00180 * 184.22040 * 10 8 7 12 12 C 1.38738 * 120.07933 * 30.04201 * 11 10 8 13 13 C 1.38182 * 120.01973 * 179.71929 * 12 11 10 14 14 C 1.38558 * 120.17810 * 0.25972 * 13 12 11 15 15 F 1.35099 * 119.92091 * 179.97438 * 14 13 12 16 16 C 1.38347 * 120.15666 * 0.02562 * 14 13 12 17 17 C 1.38731 * 119.98381 * 359.97438 * 16 14 13 18 18 O 1.35772 * 120.09267 * 179.97438 * 17 16 14 19 19 C 1.34802 * 116.99719 * 355.43152 * 18 17 16 20 20 H 1.08001 * 120.00280 * 5.01823 * 19 18 17 21 21 C 1.38639 * 120.00037 * 185.02792 * 19 18 17 22 22 N 1.31572 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00075 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47135 * 60.00048 * 23 21 19 25 25 H 1.48504 * 109.46825 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47281 * 299.99692 * 23 21 19 27 27 H 1.08993 * 109.47377 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46521 * 299.99881 * 1 2 3 29 29 H 1.08995 * 109.47397 * 59.99411 * 1 2 3 30 30 H 1.09002 * 109.46521 * 240.00119 * 2 1 3 31 31 H 1.08995 * 109.47397 * 120.00589 * 2 1 3 32 32 H 1.07995 * 126.07462 * 180.02562 * 5 4 3 33 33 H 1.08001 * 127.32612 * 180.27815 * 6 5 4 34 34 H 0.96999 * 119.99669 * 4.22010 * 10 8 7 35 35 H 1.07997 * 119.98539 * 0.02562 * 12 11 10 36 36 H 1.07995 * 119.90858 * 180.27498 * 13 12 11 37 37 H 1.08001 * 120.00526 * 179.97438 * 16 14 13 38 38 H 0.96996 * 120.00554 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3973 2.0323 -1.0403 5 6 2.7801 3.2423 -0.7208 6 6 2.6285 3.3891 0.6599 7 6 2.1403 2.1731 1.1064 8 6 1.8127 1.8086 2.4936 9 8 2.0639 2.5795 3.4006 10 7 1.2342 0.6208 2.7597 11 6 0.8418 0.3104 4.0672 12 6 0.4530 1.3208 4.9348 13 6 0.0604 1.0125 6.2233 14 6 0.0588 -0.3042 6.6547 15 9 -0.3255 -0.5997 7.9158 16 6 0.4508 -1.3169 5.7976 17 6 0.8462 -1.0149 4.5025 18 8 1.2318 -2.0070 3.6596 19 6 1.2987 -3.2526 4.1706 20 1 0.9739 -3.4389 5.1836 21 6 1.7845 -4.2945 3.3957 22 7 2.1799 -4.0677 2.1615 23 14 1.8778 -6.0205 4.1040 24 1 0.5175 -6.4690 4.4959 25 1 2.4282 -6.9461 3.0814 26 1 2.7615 -6.0188 5.2975 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.1437 3.9954 -1.4041 33 1 2.8475 4.2644 1.2533 34 1 1.0896 -0.0191 2.0451 35 1 0.4524 2.3480 4.6014 36 1 -0.2462 1.7999 6.8958 37 1 0.4490 -2.3424 6.1365 38 1 2.5195 -4.7967 1.6192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773063243.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:52 Heat of formation + Delta-G solvation = 13.432628 kcal Electronic energy + Delta-G solvation = -26777.993035 eV Core-core repulsion = 22731.510576 eV Total energy + Delta-G solvation = -4046.482459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.34415 -42.55180 -40.11634 -38.58114 -36.43473 -35.39800 -33.65255 -32.51518 -30.99018 -29.85552 -29.52514 -28.34854 -25.64089 -24.33285 -23.45651 -22.29779 -21.47181 -21.28941 -19.96244 -18.47150 -18.12808 -17.63010 -16.82814 -16.20022 -15.66416 -15.36586 -15.34481 -15.07332 -15.02664 -14.44369 -14.28774 -14.15876 -13.81299 -13.69087 -13.50100 -13.20851 -13.04138 -12.64855 -12.41109 -12.28936 -12.04919 -11.79940 -11.54015 -11.36901 -11.06712 -10.91690 -10.77260 -10.62682 -9.99158 -9.93272 -9.59232 -9.17022 -9.06022 -8.99479 -8.01201 -7.24568 -6.72131 -4.29419 1.22326 1.81756 2.00110 2.43957 2.67143 3.00672 3.02420 3.04436 3.22619 3.34099 3.76075 4.22232 4.39577 4.64236 4.73093 4.82256 4.86404 4.99027 5.00209 5.14876 5.29547 5.44833 5.54955 5.64269 5.65072 5.69135 5.86019 5.90515 6.00009 6.05907 6.40877 6.52128 6.59986 6.73614 6.78608 6.82127 6.87981 7.07370 7.50576 7.63074 7.72779 8.05074 8.27157 8.74694 9.32596 10.45161 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010450 B = 0.005320 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.815829 B = 5261.975764 C = 7520.037909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 N -0.269 5.269 4 N -0.274 5.274 5 C -0.011 4.011 6 C -0.160 4.160 7 C -0.037 4.037 8 C 0.584 3.416 9 O -0.517 6.517 10 N -0.652 5.652 11 C 0.054 3.946 12 C -0.050 4.050 13 C -0.226 4.226 14 C 0.133 3.867 15 F -0.150 7.150 16 C -0.256 4.256 17 C 0.159 3.841 18 O -0.171 6.171 19 C -0.393 4.393 20 H 0.095 0.905 21 C 0.045 3.955 22 N -0.861 5.861 23 Si 0.943 3.057 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.268 1.268 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.186 0.814 33 H 0.163 0.837 34 H 0.413 0.587 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.145 0.855 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 7.620 -3.878 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.023 4.023 3 N -0.060 5.060 4 N -0.107 5.107 5 C -0.187 4.187 6 C -0.189 4.189 7 C -0.165 4.165 8 C 0.370 3.630 9 O -0.392 6.392 10 N -0.302 5.302 11 C -0.040 4.040 12 C -0.070 4.070 13 C -0.246 4.246 14 C 0.113 3.887 15 F -0.128 7.128 16 C -0.277 4.277 17 C 0.103 3.897 18 O -0.074 6.074 19 C -0.469 4.469 20 H 0.113 0.887 21 C -0.160 4.160 22 N -0.495 5.495 23 Si 0.767 3.233 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.193 1.193 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.203 0.797 33 H 0.181 0.819 34 H 0.257 0.743 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.162 0.838 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.422 7.108 -4.570 8.790 hybrid contribution 0.115 -0.817 0.967 1.271 sum -2.306 6.291 -3.603 7.608 Atomic orbital electron populations 1.22317 0.92913 1.04924 1.03466 1.22355 0.96415 0.76620 1.06911 1.46092 1.44517 1.12248 1.03128 1.73130 1.15920 1.07511 1.14166 1.23572 1.05629 0.94413 0.95065 1.22141 1.04389 0.97262 0.95151 1.21701 1.11900 0.94161 0.88705 1.17005 0.77656 0.82107 0.86205 1.90792 1.53084 1.50697 1.44590 1.43774 1.58733 1.17970 1.09762 1.16859 1.10084 0.90761 0.86286 1.20629 0.95502 0.98735 0.92153 1.20493 1.12122 0.94361 0.97652 1.17470 0.98771 0.93517 0.78941 1.91421 1.88855 1.94334 1.38216 1.20856 1.12268 1.00161 0.94418 1.18724 0.94121 0.87844 0.89048 1.83868 1.73637 1.15505 1.34438 1.21307 1.44597 0.80740 1.00208 0.88748 1.25267 0.95484 0.99781 0.95471 1.69957 1.38577 1.33597 1.07336 0.85735 0.79249 0.79607 0.78713 1.19304 1.20131 1.19321 0.88623 0.91534 0.91077 0.86567 0.86889 0.79669 0.81922 0.74343 0.84012 0.85678 0.83756 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.57 37.16 0.36 -1.82 16 2 C 0.10 1.33 6.20 -4.04 -0.03 1.31 16 3 N -0.27 -4.04 3.35 -57.14 -0.19 -4.23 16 4 N -0.27 -4.00 11.90 30.59 0.36 -3.64 16 5 C -0.01 -0.14 12.03 -17.43 -0.21 -0.35 16 6 C -0.16 -2.22 10.85 -38.98 -0.42 -2.64 16 7 C -0.04 -0.60 6.95 -82.07 -0.57 -1.17 16 8 C 0.58 10.58 7.57 -12.65 -0.10 10.48 16 9 O -0.52 -10.25 14.35 5.23 0.08 -10.17 16 10 N -0.65 -12.06 4.59 -10.77 -0.05 -12.11 16 11 C 0.05 1.09 6.37 -83.48 -0.53 0.56 16 12 C -0.05 -0.93 8.67 -39.42 -0.34 -1.27 16 13 C -0.23 -4.03 10.02 -39.48 -0.40 -4.42 16 14 C 0.13 2.55 7.29 -39.42 -0.29 2.26 16 15 F -0.15 -2.75 17.26 2.25 0.04 -2.71 16 16 C -0.26 -5.35 9.14 -39.36 -0.36 -5.71 16 17 C 0.16 3.51 6.67 -38.93 -0.26 3.25 16 18 O -0.17 -4.23 9.25 0.06 0.00 -4.23 16 19 C -0.39 -9.84 9.48 30.88 0.29 -9.55 16 20 H 0.10 2.23 5.20 -52.49 -0.27 1.95 16 21 C 0.05 1.11 5.49 -17.51 -0.10 1.02 16 22 N -0.86 -22.04 13.67 55.48 0.76 -21.28 16 23 Si 0.94 18.87 29.55 -169.99 -5.02 13.85 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.87 6.91 -51.93 -0.36 0.52 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.11 1.80 5.94 -51.93 -0.31 1.49 16 32 H 0.19 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.41 7.26 2.93 -40.82 -0.12 7.14 16 35 H 0.14 2.54 6.13 -52.49 -0.32 2.22 16 36 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.14 2.99 5.63 -52.49 -0.30 2.70 16 38 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -28.60 331.20 -5.33 -33.93 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -3.35 Total: 13.65 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.95 Total: -8.06 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.88 Total: -41.26 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.41 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.60 -5.33 -33.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773063243.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.367 kcal (2) G-P(sol) polarization free energy of solvation -28.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds