Wall clock time and date at job start Tue Mar 31 2020 12:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47059 * 2 1 4 4 C 1.52996 * 109.47158 * 119.99857 * 2 1 3 5 5 N 1.46499 * 109.47560 * 295.00015 * 4 2 1 6 6 C 1.36932 * 120.00377 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99829 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00139 * 180.02562 * 6 5 4 9 9 N 1.31627 * 120.00104 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00167 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47548 * 89.99543 * 10 8 6 12 12 H 1.48505 * 109.47116 * 209.99689 * 10 8 6 13 13 H 1.48505 * 109.47041 * 329.99649 * 10 8 6 14 14 C 1.53001 * 109.47306 * 240.00297 * 2 1 3 15 15 N 1.46493 * 109.47084 * 64.99586 * 14 2 1 16 16 C 1.34784 * 119.99864 * 180.02562 * 15 14 2 17 17 O 1.21624 * 119.99940 * 359.72393 * 16 15 14 18 18 C 1.47188 * 120.00042 * 179.72794 * 16 15 14 19 19 C 1.33791 * 124.65004 * 179.72682 * 18 16 15 20 20 C 1.40105 * 115.50143 * 179.79096 * 19 18 16 21 21 C 1.41719 * 129.98941 * 180.18897 * 20 19 18 22 22 C 1.36040 * 119.33519 * 180.32635 * 21 20 19 23 23 N 1.32311 * 121.57915 * 359.97438 * 22 21 20 24 24 C 1.31356 * 122.05634 * 0.02562 * 23 22 21 25 25 C 1.39725 * 120.59965 * 359.97438 * 24 23 22 26 26 S 1.75535 * 124.64895 * 0.02562 * 18 16 15 27 27 H 1.09003 * 109.46845 * 59.99988 * 1 2 3 28 28 H 1.09000 * 109.46725 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46950 * 300.00009 * 1 2 3 30 30 H 1.09002 * 109.47048 * 55.00003 * 4 2 1 31 31 H 1.09004 * 109.47538 * 175.00060 * 4 2 1 32 32 H 0.96999 * 119.99585 * 359.97438 * 5 4 2 33 33 H 0.96996 * 120.00123 * 179.97438 * 9 8 6 34 34 H 1.09007 * 109.46593 * 304.99843 * 14 2 1 35 35 H 1.09006 * 109.47216 * 185.00301 * 14 2 1 36 36 H 0.97000 * 120.00740 * 359.72857 * 15 14 2 37 37 H 1.07997 * 122.24676 * 359.97159 * 19 18 16 38 38 H 1.07997 * 120.33154 * 0.30345 * 21 20 19 39 39 H 1.08001 * 119.20813 * 180.02562 * 22 21 20 40 40 H 1.07992 * 119.69738 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 0.0354 2.4424 6 6 2.0011 -0.4208 3.6856 7 1 2.5621 -1.3381 3.7864 8 6 1.6334 0.2958 4.8161 9 7 0.9501 1.4141 4.6932 10 14 2.1096 -0.3260 6.5119 11 1 3.4319 0.2335 6.8912 12 1 1.0885 0.1029 7.5012 13 1 2.1870 -1.8089 6.4917 14 6 2.0401 -0.7212 -1.2493 15 7 1.6524 0.0354 -2.4423 16 6 1.9956 -0.4135 -3.6660 17 8 2.6314 -1.4442 -3.7794 18 6 1.6010 0.3435 -4.8650 19 6 1.8955 -0.0127 -6.1206 20 6 1.4199 0.8475 -7.1189 21 6 1.5482 0.7666 -8.5280 22 6 0.9988 1.7393 -9.3043 23 7 0.3455 2.7612 -8.7756 24 6 0.1916 2.8942 -7.4778 25 6 0.7203 1.9460 -6.5981 26 16 0.6859 1.8413 -4.8433 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6054 -1.7198 1.2951 31 1 3.1264 -0.7994 1.2056 32 1 1.1489 0.8594 2.3517 33 1 0.6929 1.9147 5.4832 34 1 1.6054 -1.7198 -1.2952 35 1 3.1264 -0.7994 -1.2056 36 1 1.1451 0.8572 -2.3520 37 1 2.4593 -0.9050 -6.3493 38 1 2.0773 -0.0588 -8.9809 39 1 1.0975 1.6753 -10.3778 40 1 -0.3484 3.7440 -7.0874 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753618954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:53 Heat of formation + Delta-G solvation = 24.667423 kcal Electronic energy + Delta-G solvation = -22580.154768 eV Core-core repulsion = 19100.372662 eV Total energy + Delta-G solvation = -3479.782106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.93800 -39.94439 -37.13823 -36.35469 -34.51106 -32.65042 -31.95988 -31.00272 -30.01947 -27.00367 -25.86012 -24.90560 -24.31376 -22.69272 -21.73146 -20.79065 -20.01378 -18.93129 -17.41466 -17.04995 -16.92175 -16.52513 -15.90678 -15.68171 -15.01345 -14.94373 -14.72415 -14.36679 -14.33729 -14.20866 -13.67892 -13.45654 -13.10923 -12.82201 -12.51580 -12.31451 -12.31232 -12.10072 -11.42445 -11.10898 -10.95614 -10.77395 -10.64248 -10.54657 -10.47970 -10.34465 -10.18633 -10.03825 -9.71061 -9.61519 -9.22390 -8.90270 -8.40431 -6.95255 -5.79446 -3.08072 -0.31175 0.48045 0.78878 1.25010 1.49480 2.79644 2.80738 3.24182 3.42415 3.47766 3.49255 3.91391 4.05780 4.18377 4.36266 4.49951 4.56506 4.85637 4.93778 5.00664 5.09838 5.12909 5.25220 5.30312 5.53062 5.54970 5.65179 5.72066 5.87464 5.88361 6.01687 6.02160 6.14660 6.27595 6.35386 6.60120 6.71690 6.80860 7.17433 7.38502 7.68236 7.83496 8.39567 9.50930 10.07636 10.42377 11.43473 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.035849 B = 0.002048 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.862000 B =13669.906708 C =14294.952639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.714 5.714 16 C 0.583 3.417 17 O -0.522 6.522 18 C -0.200 4.200 19 C -0.056 4.056 20 C -0.044 4.044 21 C -0.119 4.119 22 C 0.078 3.922 23 N -0.467 5.467 24 C 0.161 3.839 25 C -0.199 4.199 26 S 0.163 5.837 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.400 0.600 37 H 0.161 0.839 38 H 0.144 0.856 39 H 0.162 0.838 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 1.614 -28.221 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.003 3.997 15 N -0.365 5.365 16 C 0.367 3.633 17 O -0.400 6.400 18 C -0.321 4.321 19 C -0.089 4.089 20 C -0.060 4.060 21 C -0.141 4.141 22 C -0.071 4.071 23 N -0.176 5.176 24 C -0.010 4.010 25 C -0.317 4.317 26 S 0.428 5.572 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.235 0.765 37 H 0.178 0.822 38 H 0.161 0.839 39 H 0.179 0.821 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.935 2.213 -27.542 27.699 hybrid contribution 0.780 -1.096 0.458 1.421 sum -1.155 1.117 -27.084 27.132 Atomic orbital electron populations 1.21811 0.94546 1.02097 1.01588 1.21579 0.96839 1.00606 0.94070 0.90376 1.20567 0.96664 0.94223 0.85272 1.42329 1.66976 1.27664 1.00558 1.19232 1.28713 1.05485 0.83618 0.91129 1.24744 1.00984 0.97421 0.97894 1.69655 1.43498 1.16597 1.28526 0.86173 0.77586 0.78021 0.84308 1.21723 1.21771 1.20748 1.21545 1.00568 0.95303 0.82301 1.45968 1.56921 1.27895 1.05766 1.17042 0.79877 0.84422 0.81984 1.90843 1.39518 1.23475 1.86119 1.24070 1.08187 1.01768 0.98084 1.20170 0.98782 1.00284 0.89624 1.18361 0.98597 0.94211 0.94832 1.21818 1.00301 1.00726 0.91267 1.22198 0.94295 0.89789 1.00845 1.67729 1.14467 1.22668 1.12718 1.22386 0.94965 0.96125 0.87538 1.24140 1.06730 1.01694 0.99186 1.84244 1.54689 1.19517 0.98704 0.93997 0.92651 0.90923 0.95898 0.96046 0.78188 0.93510 0.90772 0.90746 0.76542 0.82163 0.83869 0.82106 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.16 0.33 -1.70 16 2 C -0.11 -1.66 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 4 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 5 N -0.73 -17.97 5.33 -59.91 -0.32 -18.29 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 10 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.13 1.65 5.06 -4.04 -0.02 1.63 16 15 N -0.71 -8.29 5.28 -61.46 -0.32 -8.61 16 16 C 0.58 7.36 7.80 -12.62 -0.10 7.26 16 17 O -0.52 -8.24 16.73 5.26 0.09 -8.15 16 18 C -0.20 -2.07 6.33 -37.51 -0.24 -2.31 16 19 C -0.06 -0.53 9.81 -40.44 -0.40 -0.93 16 20 C -0.04 -0.39 5.91 -107.11 -0.63 -1.02 16 21 C -0.12 -0.80 10.13 -39.04 -0.40 -1.20 16 22 C 0.08 0.54 11.06 -18.13 -0.20 0.33 16 23 N -0.47 -4.04 10.34 -13.41 -0.14 -4.18 16 24 C 0.16 1.27 11.24 -17.20 -0.19 1.08 16 25 C -0.20 -1.71 6.54 -38.27 -0.25 -1.96 16 26 S 0.16 1.34 22.26 -107.50 -2.39 -1.05 16 27 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.22 7.18 -51.93 -0.37 0.84 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.40 3.92 6.70 -40.82 -0.27 3.65 16 37 H 0.16 1.39 7.96 -52.49 -0.42 0.97 16 38 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 39 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -33.07 355.32 -9.68 -42.76 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.07 Total: 6.94 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.59 Total: -4.90 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.06 Total: -58.22 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.39 Total: -1.05 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.07 -9.68 -42.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.426 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds