Wall clock time and date at job start Tue Mar 31 2020 12:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47341 * 2 1 4 4 C 1.53004 * 109.46896 * 119.99936 * 2 1 3 5 5 N 1.46497 * 109.47318 * 174.99872 * 4 2 1 6 6 C 1.46497 * 119.99962 * 270.00232 * 5 4 2 7 7 C 1.36936 * 120.00049 * 89.99499 * 5 4 2 8 8 H 1.08000 * 120.00210 * 23.67372 * 7 5 4 9 9 C 1.38815 * 120.00231 * 203.67341 * 7 5 4 10 10 N 1.31624 * 119.99661 * 11.22443 * 9 7 5 11 11 Si 1.86794 * 120.00176 * 191.22243 * 9 7 5 12 12 H 1.48507 * 109.46748 * 90.00380 * 11 9 7 13 13 H 1.48503 * 109.47312 * 209.99986 * 11 9 7 14 14 H 1.48497 * 109.47353 * 330.00555 * 11 9 7 15 15 N 1.46502 * 109.47057 * 239.99305 * 2 1 3 16 16 C 1.34779 * 119.99680 * 85.00568 * 15 2 1 17 17 O 1.21609 * 120.00096 * 359.97438 * 16 15 2 18 18 C 1.47395 * 119.99832 * 180.02562 * 16 15 2 19 19 C 1.38869 * 120.01805 * 359.97438 * 18 16 15 20 20 C 1.38231 * 120.45947 * 179.97438 * 19 18 16 21 21 C 1.37957 * 120.27692 * 359.97438 * 20 19 18 22 22 C 1.39191 * 120.44813 * 0.02562 * 21 20 19 23 23 S 1.76139 * 131.63108 * 180.02562 * 22 21 20 24 24 C 1.70686 * 90.71040 * 179.97438 * 23 22 21 25 25 N 1.28150 * 111.37812 * 359.97438 * 24 23 22 26 26 C 1.33642 * 118.01740 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.46727 * 300.00658 * 1 2 3 28 28 H 1.09005 * 109.46758 * 59.99933 * 1 2 3 29 29 H 1.08993 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46987 * 294.99924 * 4 2 1 31 31 H 1.08992 * 109.47348 * 54.99459 * 4 2 1 32 32 H 1.08996 * 109.47686 * 94.62347 * 6 5 4 33 33 H 1.08998 * 109.47182 * 214.62228 * 6 5 4 34 34 H 1.09002 * 109.47099 * 334.61977 * 6 5 4 35 35 H 0.97000 * 119.99994 * 179.97438 * 10 9 7 36 36 H 0.96995 * 120.00115 * 265.00361 * 15 2 1 37 37 H 1.08007 * 119.76908 * 359.95446 * 19 18 16 38 38 H 1.08008 * 119.86441 * 179.72441 * 20 19 18 39 39 H 1.08004 * 119.77384 * 179.97438 * 21 20 19 40 40 H 1.08006 * 124.31106 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1907 6 6 4.1257 -1.9920 0.5614 7 6 4.2798 0.1647 1.7241 8 1 3.8837 0.8065 2.4972 9 6 5.5796 0.3448 1.2711 10 7 5.9915 -0.2796 0.1881 11 14 6.7440 1.4733 2.1985 12 1 7.4754 0.6918 3.2279 13 1 7.7157 2.0712 1.2479 14 1 5.9667 2.5537 2.8569 15 7 2.0183 -0.6908 -1.1961 16 6 2.1471 -0.0185 -2.3571 17 8 1.8576 1.1614 -2.4119 18 6 2.6379 -0.7135 -3.5607 19 6 2.9682 -2.0610 -3.4986 20 6 3.4288 -2.7220 -4.6219 21 6 3.5648 -2.0487 -5.8183 22 6 3.2409 -0.6980 -5.9083 23 16 3.2988 0.4317 -7.2585 24 6 2.7176 1.6881 -6.2598 25 7 2.5139 1.2772 -5.0632 26 6 2.7725 -0.0045 -4.7869 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.7516 -0.1583 2.1370 31 1 1.6053 -1.7197 1.2953 32 1 4.3547 -1.7639 -0.4796 33 1 5.0462 -2.2399 1.0899 34 1 3.4419 -2.8397 0.6056 35 1 6.8996 -0.1535 -0.1287 36 1 2.2490 -1.6319 -1.1525 37 1 2.8647 -2.5961 -2.5662 38 1 3.6871 -3.7690 -4.5617 39 1 3.9258 -2.5730 -6.6908 40 1 2.5430 2.7001 -6.5941 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:45 Heat of formation + Delta-G solvation = 55.907025 kcal Electronic energy + Delta-G solvation = -24765.355429 eV Core-core repulsion = 21286.927974 eV Total energy + Delta-G solvation = -3478.427455 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59290 -38.81096 -36.79031 -36.21019 -33.94557 -31.97172 -30.83796 -29.89358 -29.70224 -26.16781 -25.59497 -25.04200 -24.07234 -21.99183 -21.39279 -20.59728 -19.85667 -18.48476 -16.97025 -16.77230 -16.33450 -15.72660 -15.20958 -15.02733 -14.93591 -14.72879 -14.15626 -13.77859 -13.58895 -13.38496 -13.13835 -12.83229 -12.63219 -12.15550 -12.07666 -11.96680 -11.76120 -11.40607 -11.24927 -11.05803 -10.82116 -10.75717 -10.52253 -10.19097 -10.06109 -9.93091 -9.83332 -9.60250 -9.13436 -8.77430 -8.56905 -8.32896 -8.07546 -6.72313 -5.70559 -3.16595 0.26089 0.88425 1.21911 1.65913 2.41979 3.19472 3.40757 3.47527 3.48823 3.71393 4.02335 4.11833 4.52970 4.59537 4.83927 4.97896 5.16488 5.17096 5.37047 5.44352 5.51772 5.66716 5.76506 5.89954 5.98642 6.03541 6.08985 6.13555 6.21190 6.28357 6.50769 6.55062 6.56754 6.65053 6.93429 7.23545 7.32042 7.65892 7.70680 7.83037 8.18014 8.41608 8.90316 9.25327 9.87535 10.35605 11.34667 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.004282 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.455164 B = 6537.341512 C = 7094.232507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.161 3.839 7 C -0.256 4.256 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.279 1.279 15 N -0.694 5.694 16 C 0.553 3.447 17 O -0.517 6.517 18 C -0.062 4.062 19 C -0.069 4.069 20 C -0.104 4.104 21 C -0.057 4.057 22 C -0.187 4.187 23 S 0.074 5.926 24 C 0.068 3.932 25 N -0.430 5.430 26 C 0.127 3.873 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.043 0.957 34 H -0.006 1.006 35 H 0.251 0.749 36 H 0.392 0.608 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.717 -6.273 -13.544 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.104 0.896 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.016 3.984 7 C -0.386 4.386 8 H 0.086 0.914 9 C -0.192 4.192 10 N -0.548 5.548 11 Si 0.734 3.266 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.345 5.345 16 C 0.339 3.661 17 O -0.393 6.393 18 C -0.069 4.069 19 C -0.090 4.090 20 C -0.126 4.126 21 C -0.079 4.079 22 C -0.306 4.306 23 S 0.327 5.673 24 C -0.237 4.237 25 N -0.140 5.140 26 C 0.004 3.996 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.012 0.988 35 H 0.061 0.939 36 H 0.227 0.773 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.684 -4.977 -14.272 16.957 hybrid contribution 0.939 -0.034 1.120 1.462 sum -6.746 -5.011 -13.152 15.608 Atomic orbital electron populations 1.22154 0.96883 1.01035 1.01719 1.21870 0.91634 0.99245 0.86147 0.89563 1.21203 0.85798 0.97178 0.94360 1.43872 0.99049 1.20849 1.68127 1.20861 0.94546 0.85052 0.97951 1.19171 0.94563 1.10639 1.14223 0.91422 1.25017 0.98916 0.99017 0.96294 1.70029 1.17159 1.45656 1.21975 0.86272 0.80975 0.80516 0.78872 1.21569 1.21849 1.20488 1.45703 1.66231 1.13482 1.09103 1.17803 0.78706 0.86758 0.82868 1.90800 1.49132 1.14709 1.84701 1.19794 1.01687 0.93343 0.92038 1.21274 0.95805 0.92733 0.99237 1.21061 0.99257 1.00522 0.91712 1.20416 0.98259 0.90558 0.98705 1.23831 1.09774 1.00088 0.96900 1.83823 1.67114 1.02864 1.13455 1.28378 1.00139 1.04368 0.90854 1.65925 1.16440 1.13733 1.17922 1.18763 0.99701 0.87808 0.93318 0.92078 0.92946 0.93233 0.92246 0.94045 0.95015 0.93853 0.98770 0.93911 0.77309 0.84254 0.84063 0.84941 0.78020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.48 37.16 0.35 -2.14 16 2 C 0.12 2.29 2.88 -67.93 -0.20 2.10 16 3 H 0.09 2.03 7.58 -51.93 -0.39 1.64 16 4 C 0.14 2.78 5.33 -4.04 -0.02 2.76 16 5 N -0.60 -14.35 2.78 -181.12 -0.50 -14.86 16 6 C 0.16 3.67 7.60 59.85 0.46 4.13 16 7 C -0.26 -7.01 9.66 -15.06 -0.15 -7.15 16 8 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.90 -26.23 10.66 55.49 0.59 -25.64 16 11 Si 0.90 22.40 29.57 -169.99 -5.03 17.38 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 N -0.69 -13.21 4.36 -54.89 -0.24 -13.44 16 16 C 0.55 11.64 7.72 -12.53 -0.10 11.55 16 17 O -0.52 -12.72 15.44 5.27 0.08 -12.64 16 18 C -0.06 -1.13 5.92 -104.38 -0.62 -1.75 16 19 C -0.07 -0.98 9.50 -39.35 -0.37 -1.35 16 20 C -0.10 -1.18 10.02 -39.69 -0.40 -1.58 16 21 C -0.06 -0.66 10.05 -39.33 -0.40 -1.05 16 22 C -0.19 -2.67 6.55 -38.60 -0.25 -2.92 16 23 S 0.07 0.84 23.18 -107.50 -2.49 -1.65 16 24 C 0.07 0.89 12.12 51.23 0.62 1.51 16 25 N -0.43 -7.86 9.43 -12.74 -0.12 -7.98 16 26 C 0.13 2.27 6.73 -84.89 -0.57 1.70 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 31 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 32 H 0.03 0.77 6.90 -51.93 -0.36 0.41 16 33 H 0.04 1.10 7.30 -51.93 -0.38 0.72 16 34 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.39 6.64 5.17 -40.82 -0.21 6.43 16 37 H 0.14 1.73 6.34 -52.48 -0.33 1.40 16 38 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 39 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 40 H 0.20 1.85 8.06 -52.48 -0.42 1.42 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -35.34 347.21 -9.20 -44.53 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.99 Total: 3.18 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.73 Total: 5.89 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.27 Total: -61.92 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.38 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.49 Total: -1.65 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.34 -9.20 -44.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.438 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds